Wall clock time and date at job start Mon Mar 30 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99953 * 2 1 4 4 C 1.50698 * 109.47538 * 270.00142 * 3 2 1 5 5 H 1.08004 * 119.99464 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00450 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00330 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99916 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47289 * 90.00080 * 8 6 4 10 10 H 1.48500 * 109.47393 * 209.99855 * 8 6 4 11 11 H 1.48498 * 109.47182 * 330.00368 * 8 6 4 12 12 C 1.34778 * 120.00049 * 180.02562 * 2 1 3 13 13 O 1.21548 * 120.00067 * 184.84690 * 12 2 1 14 14 C 1.47845 * 119.99800 * 4.83987 * 12 2 1 15 15 C 1.39593 * 120.14783 * 320.79489 * 14 12 2 16 16 C 1.37939 * 119.85676 * 179.97438 * 15 14 12 17 17 C 1.38377 * 120.14060 * 0.02562 * 16 15 14 18 18 C 1.38337 * 120.29575 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.92417 * 179.97438 * 18 17 16 20 20 C 1.52992 * 109.47616 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.46346 * 120.00710 * 19 18 17 22 22 C 1.53001 * 109.47067 * 240.00347 * 19 18 17 23 23 C 1.37970 * 120.14406 * 359.97438 * 18 17 16 24 24 H 1.09004 * 109.47091 * 265.63324 * 1 2 3 25 25 H 1.09003 * 109.47593 * 25.63252 * 1 2 3 26 26 H 1.09001 * 109.47647 * 145.63170 * 1 2 3 27 27 H 1.08999 * 109.47293 * 30.00639 * 3 2 1 28 28 H 1.09000 * 109.46955 * 150.00199 * 3 2 1 29 29 H 0.97001 * 119.99586 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.07434 * 0.04593 * 15 14 12 31 31 H 1.07994 * 119.92675 * 180.02562 * 16 15 14 32 32 H 1.08001 * 119.84877 * 180.27826 * 17 16 15 33 33 H 1.09005 * 109.47038 * 59.99539 * 20 19 18 34 34 H 1.09002 * 109.47432 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.46872 * 300.00056 * 20 19 18 36 36 H 1.08995 * 109.47047 * 60.00320 * 21 19 18 37 37 H 1.09007 * 109.46710 * 179.97438 * 21 19 18 38 38 H 1.08991 * 109.47389 * 299.99251 * 21 19 18 39 39 H 1.09004 * 109.46906 * 60.00259 * 22 19 18 40 40 H 1.09001 * 109.46670 * 180.02562 * 22 19 18 41 41 H 1.09004 * 109.47155 * 300.00659 * 22 19 18 42 42 H 1.08001 * 120.07431 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3456 3.2575 -2.9127 8 14 3.7350 3.9280 -0.2529 9 1 5.1083 3.5057 0.1225 10 1 3.7510 5.3548 -0.6641 11 1 2.8294 3.7585 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3511 -1.1691 0.0884 14 6 1.4036 -2.4452 -0.1091 15 6 0.1905 -2.6152 0.5604 16 6 -0.4907 -3.8100 0.4545 17 6 0.0261 -4.8389 -0.3130 18 6 1.2277 -4.6770 -0.9791 19 6 1.7832 -5.8033 -1.8122 20 6 0.8313 -6.9995 -1.7523 21 6 1.9292 -5.3402 -3.2631 22 6 3.1529 -6.2131 -1.2674 23 6 1.9186 -3.4867 -0.8823 24 1 -0.3633 -0.0782 1.0247 25 1 -0.3634 0.9265 -0.4446 26 1 -0.3634 -0.8482 -0.5801 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.8224 4.0834 -3.0898 30 1 -0.2143 -1.8127 1.1592 31 1 -1.4295 -3.9426 0.9716 32 1 -0.5135 -5.7707 -0.3963 33 1 -0.1444 -6.7073 -2.1407 34 1 1.2329 -7.8140 -2.3553 35 1 0.7270 -7.3294 -0.7187 36 1 2.6072 -4.4879 -3.3060 37 1 2.3314 -6.1547 -3.8657 38 1 0.9535 -5.0483 -3.6513 39 1 3.0489 -6.5429 -0.2336 40 1 3.5548 -7.0275 -1.8702 41 1 3.8309 -5.3607 -1.3103 42 1 2.8568 -3.3616 -1.4025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578245121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:58 Heat of formation + Delta-G solvation = -13.158261 kcal Electronic energy + Delta-G solvation = -21380.905751 eV Core-core repulsion = 18325.861397 eV Total energy + Delta-G solvation = -3055.044354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21774 -38.63700 -36.15741 -34.98968 -32.58784 -31.16020 -30.16486 -28.32063 -27.49543 -27.29848 -26.11674 -23.59779 -22.92288 -21.64712 -19.84652 -18.40602 -16.94903 -16.79832 -16.15753 -15.59033 -15.08668 -14.83772 -14.43459 -14.35486 -13.96014 -13.80314 -13.46927 -13.04317 -12.80732 -12.58387 -12.39465 -12.20696 -12.09261 -11.99848 -11.76852 -11.66476 -11.64653 -11.29722 -11.03963 -10.94277 -10.72953 -10.52930 -10.51396 -10.16281 -9.56040 -9.14214 -8.76919 -8.60138 -8.57318 -7.72106 -6.09090 -4.08298 1.17609 1.45232 3.29452 3.30421 3.35486 3.37450 3.73713 4.07688 4.39516 4.49601 4.66697 4.88935 4.91618 5.03618 5.12226 5.21213 5.25665 5.38030 5.42160 5.54392 5.61342 5.65481 5.66202 5.74390 5.79545 5.82408 5.85778 5.89969 6.03101 6.13550 6.16994 6.18076 6.23320 6.45420 6.52892 6.62294 6.72487 6.93708 7.00826 7.31667 7.59723 8.20329 8.46062 8.89404 8.95973 9.50864 11.04220 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.004415 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.012750 B = 6339.911707 C = 6841.473209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.590 5.590 3 C 0.214 3.786 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.549 3.451 13 O -0.537 6.537 14 C -0.112 4.112 15 C -0.103 4.103 16 C -0.128 4.128 17 C -0.109 4.109 18 C -0.080 4.080 19 C -0.028 4.028 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.062 4.062 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 -18.351 4.983 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.321 5.321 3 C 0.094 3.906 4 C -0.569 4.569 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.336 3.664 13 O -0.415 6.415 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.146 4.146 17 C -0.128 4.128 18 C -0.080 4.080 19 C -0.028 4.028 20 C -0.199 4.199 21 C -0.199 4.199 22 C -0.198 4.198 23 C -0.081 4.081 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.399 -18.152 4.918 20.597 hybrid contribution 0.244 0.775 0.544 0.978 sum -8.155 -17.377 5.463 19.958 Atomic orbital electron populations 1.21991 0.81038 1.03537 0.99986 1.47738 1.06335 1.06911 1.71095 1.19718 0.92616 0.79786 0.98491 1.21332 1.37086 1.07295 0.91207 0.90731 1.24851 0.95179 0.97305 0.95616 1.69902 1.41420 1.23553 1.18661 0.86842 0.80183 0.79727 0.82903 1.19847 1.21027 1.19039 1.18235 0.87127 0.83430 0.77580 1.90741 1.13595 1.87128 1.50050 1.20134 0.95886 0.95238 1.00249 1.21659 0.93663 0.97975 0.98831 1.21040 1.00193 0.93328 1.00039 1.21258 0.95541 0.99063 0.96892 1.19725 0.95159 0.94678 0.98442 1.19486 0.95701 0.92878 0.94746 1.21955 0.99115 0.97046 1.01808 1.21920 1.02276 1.01464 0.94212 1.21915 0.95423 1.01615 1.00843 1.21030 0.99218 0.91237 0.96642 0.93441 0.90519 0.91437 0.95031 0.94308 0.92535 0.84862 0.85842 0.85657 0.92282 0.92410 0.92338 0.91999 0.92362 0.92415 0.92525 0.92385 0.91990 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 8.88 59.85 0.53 1.79 16 2 N -0.59 -12.69 2.86 -184.08 -0.53 -13.21 16 3 C 0.21 5.36 4.25 -5.20 -0.02 5.34 16 4 C -0.53 -15.48 9.94 -34.44 -0.34 -15.82 16 5 H 0.07 2.39 8.06 -52.48 -0.42 1.96 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 8 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 C 0.55 12.02 7.35 -12.33 -0.09 11.93 16 13 O -0.54 -13.89 16.47 5.32 0.09 -13.80 16 14 C -0.11 -1.93 5.24 -104.97 -0.55 -2.48 16 15 C -0.10 -1.41 7.57 -39.19 -0.30 -1.70 16 16 C -0.13 -1.44 10.03 -39.64 -0.40 -1.84 16 17 C -0.11 -1.22 8.97 -39.49 -0.35 -1.58 16 18 C -0.08 -1.02 4.76 -104.68 -0.50 -1.51 16 19 C -0.03 -0.29 0.85 -155.66 -0.13 -0.43 16 20 C -0.14 -1.17 7.13 37.15 0.26 -0.90 16 21 C -0.14 -1.50 8.28 37.16 0.31 -1.19 16 22 C -0.14 -1.44 8.29 37.16 0.31 -1.14 16 23 C -0.06 -1.00 8.29 -39.19 -0.32 -1.32 16 24 H 0.05 0.61 6.90 -51.93 -0.36 0.26 16 25 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 26 H 0.07 0.99 5.81 -51.93 -0.30 0.69 16 27 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 28 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.13 1.63 5.31 -52.48 -0.28 1.35 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.09 5.87 -52.49 -0.31 0.78 16 33 H 0.06 0.46 7.50 -51.93 -0.39 0.07 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 36 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16 42 H 0.13 2.18 7.09 -52.49 -0.37 1.81 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -34.10 334.64 -7.42 -41.51 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.43 Total: -0.72 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.69 Total: -8.81 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.25 Total: -40.28 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.10 -7.42 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578245121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.355 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds