Wall clock time and date at job start Mon Mar 30 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99953 * 2 1 4 4 C 1.50698 * 109.47538 * 270.00142 * 3 2 1 5 5 H 1.08004 * 119.99464 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00450 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00330 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99916 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47289 * 90.00080 * 8 6 4 10 10 H 1.48500 * 109.47393 * 209.99855 * 8 6 4 11 11 H 1.48498 * 109.47182 * 330.00368 * 8 6 4 12 12 C 1.34778 * 120.00049 * 180.02562 * 2 1 3 13 13 O 1.21548 * 120.00067 * 184.84690 * 12 2 1 14 14 C 1.47845 * 119.99800 * 4.83987 * 12 2 1 15 15 C 1.39593 * 120.14783 * 320.79489 * 14 12 2 16 16 C 1.37939 * 119.85676 * 179.97438 * 15 14 12 17 17 C 1.38377 * 120.14060 * 0.02562 * 16 15 14 18 18 C 1.38337 * 120.29575 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.92417 * 179.97438 * 18 17 16 20 20 C 1.52992 * 109.47616 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.46346 * 120.00710 * 19 18 17 22 22 C 1.53001 * 109.47067 * 240.00347 * 19 18 17 23 23 C 1.37970 * 120.14406 * 359.97438 * 18 17 16 24 24 H 1.09004 * 109.47091 * 265.63324 * 1 2 3 25 25 H 1.09003 * 109.47593 * 25.63252 * 1 2 3 26 26 H 1.09001 * 109.47647 * 145.63170 * 1 2 3 27 27 H 1.08999 * 109.47293 * 30.00639 * 3 2 1 28 28 H 1.09000 * 109.46955 * 150.00199 * 3 2 1 29 29 H 0.97001 * 119.99586 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.07434 * 0.04593 * 15 14 12 31 31 H 1.07994 * 119.92675 * 180.02562 * 16 15 14 32 32 H 1.08001 * 119.84877 * 180.27826 * 17 16 15 33 33 H 1.09005 * 109.47038 * 59.99539 * 20 19 18 34 34 H 1.09002 * 109.47432 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.46872 * 300.00056 * 20 19 18 36 36 H 1.08995 * 109.47047 * 60.00320 * 21 19 18 37 37 H 1.09007 * 109.46710 * 179.97438 * 21 19 18 38 38 H 1.08991 * 109.47389 * 299.99251 * 21 19 18 39 39 H 1.09004 * 109.46906 * 60.00259 * 22 19 18 40 40 H 1.09001 * 109.46670 * 180.02562 * 22 19 18 41 41 H 1.09004 * 109.47155 * 300.00659 * 22 19 18 42 42 H 1.08001 * 120.07431 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3456 3.2575 -2.9127 8 14 3.7350 3.9280 -0.2529 9 1 5.1083 3.5057 0.1225 10 1 3.7510 5.3548 -0.6641 11 1 2.8294 3.7585 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3511 -1.1691 0.0884 14 6 1.4036 -2.4452 -0.1091 15 6 0.1905 -2.6152 0.5604 16 6 -0.4907 -3.8100 0.4545 17 6 0.0261 -4.8389 -0.3130 18 6 1.2277 -4.6770 -0.9791 19 6 1.7832 -5.8033 -1.8122 20 6 0.8313 -6.9995 -1.7523 21 6 1.9292 -5.3402 -3.2631 22 6 3.1529 -6.2131 -1.2674 23 6 1.9186 -3.4867 -0.8823 24 1 -0.3633 -0.0782 1.0247 25 1 -0.3634 0.9265 -0.4446 26 1 -0.3634 -0.8482 -0.5801 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.8224 4.0834 -3.0898 30 1 -0.2143 -1.8127 1.1592 31 1 -1.4295 -3.9426 0.9716 32 1 -0.5135 -5.7707 -0.3963 33 1 -0.1444 -6.7073 -2.1407 34 1 1.2329 -7.8140 -2.3553 35 1 0.7270 -7.3294 -0.7187 36 1 2.6072 -4.4879 -3.3060 37 1 2.3314 -6.1547 -3.8657 38 1 0.9535 -5.0483 -3.6513 39 1 3.0489 -6.5429 -0.2336 40 1 3.5548 -7.0275 -1.8702 41 1 3.8309 -5.3607 -1.3103 42 1 2.8568 -3.3616 -1.4025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578245121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:58 Heat of formation + Delta-G solvation = -34.580912 kcal Electronic energy + Delta-G solvation = -21381.834706 eV Core-core repulsion = 18325.861397 eV Total energy + Delta-G solvation = -3055.973309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47625 -40.00617 -37.19080 -36.74054 -34.74913 -32.37578 -31.36854 -30.02163 -28.33700 -28.15194 -27.59699 -25.27962 -23.96415 -23.14665 -21.06476 -19.71953 -19.18300 -17.96921 -17.58939 -17.12484 -16.58913 -16.01256 -15.85434 -15.57291 -15.12892 -15.04496 -14.63748 -14.42308 -14.33087 -14.02295 -13.73541 -13.64873 -13.34946 -13.03729 -12.98527 -12.78951 -12.72204 -12.55340 -12.51609 -12.31195 -12.07529 -11.82933 -11.78843 -11.67470 -11.42632 -10.87267 -10.80681 -9.90389 -9.62433 -9.47285 -8.37936 -6.44338 0.03328 0.42269 1.30556 1.35341 1.43900 1.77457 2.25584 2.28524 2.84587 2.96139 3.56359 3.61574 3.85649 4.09473 4.10979 4.12431 4.31042 4.36055 4.42614 4.53765 4.58545 4.68431 4.73520 4.80340 4.85851 4.88858 4.88974 4.92724 4.98852 5.03877 5.04243 5.16681 5.25393 5.35410 5.39659 5.40017 5.43705 5.52533 5.55558 5.67697 6.00901 6.18653 6.55733 6.56940 7.13835 7.28180 8.79204 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.004415 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.012750 B = 6339.911707 C = 6841.473209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.598 5.598 3 C 0.222 3.778 4 C -0.542 4.542 5 H 0.025 0.975 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.236 1.236 12 C 0.539 3.461 13 O -0.597 6.597 14 C -0.142 4.142 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.080 4.080 19 C -0.029 4.029 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.085 4.085 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.020 0.980 29 H 0.270 0.730 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.151 -20.175 7.209 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.328 5.328 3 C 0.100 3.900 4 C -0.580 4.580 5 H 0.043 0.957 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.159 1.159 12 C 0.329 3.671 13 O -0.479 6.479 14 C -0.145 4.145 15 C -0.118 4.118 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.080 4.080 19 C -0.029 4.029 20 C -0.195 4.195 21 C -0.199 4.199 22 C -0.198 4.198 23 C -0.104 4.104 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.168 0.832 31 H 0.186 0.814 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.488 -19.991 7.146 24.139 hybrid contribution 1.148 1.225 -0.260 1.698 sum -10.340 -18.767 6.886 22.506 Atomic orbital electron populations 1.22317 0.77639 1.03996 1.02940 1.47849 1.08557 1.05692 1.70674 1.19419 0.92911 0.82118 0.95549 1.21534 1.37297 1.07016 0.92204 0.95685 1.25876 0.95047 0.98831 0.98835 1.70054 1.42489 1.24501 1.21366 0.85677 0.79565 0.77761 0.79724 1.20248 1.19616 1.15875 1.19099 0.86838 0.85095 0.76093 1.90679 1.16308 1.88179 1.52759 1.19878 0.97890 0.93226 1.03499 1.21842 0.92054 0.99786 0.98147 1.21526 1.01020 0.91699 0.98928 1.21746 0.94321 1.00455 0.94908 1.19984 0.95617 0.93788 0.98647 1.19569 0.96297 0.93289 0.93772 1.21939 0.98701 0.95875 1.02972 1.21924 1.01716 1.01089 0.95162 1.21913 0.95198 1.01109 1.01534 1.20939 0.98948 0.92927 0.97614 0.89128 0.91031 0.89966 0.92439 0.96227 0.92113 0.83161 0.81429 0.81925 0.91302 0.91131 0.91159 0.94861 0.90525 0.92299 0.92109 0.90566 0.94699 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.23 8.88 127.77 1.13 3.37 16 2 N -0.60 -26.28 2.86 -854.59 -2.44 -28.72 16 3 C 0.22 11.33 4.25 85.63 0.36 11.70 16 4 C -0.54 -33.15 9.94 25.60 0.25 -32.90 16 5 H 0.02 1.72 8.06 -2.91 -0.02 1.69 16 6 C 0.01 0.75 5.47 84.65 0.46 1.21 16 7 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 8 Si 0.95 45.30 27.47 68.60 1.88 47.18 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 12 C 0.54 24.86 7.35 86.79 0.64 25.49 16 13 O -0.60 -33.35 16.47 -3.87 -0.06 -33.42 16 14 C -0.14 -5.01 5.24 -20.09 -0.11 -5.12 16 15 C -0.10 -2.49 7.57 22.53 0.17 -2.32 16 16 C -0.11 -2.04 10.03 22.23 0.22 -1.81 16 17 C -0.10 -1.76 8.97 22.33 0.20 -1.56 16 18 C -0.08 -1.95 4.76 -19.90 -0.09 -2.04 16 19 C -0.03 -0.57 0.85 -52.93 -0.05 -0.62 16 20 C -0.14 -1.73 7.13 71.98 0.51 -1.22 16 21 C -0.14 -3.00 8.28 71.98 0.60 -2.41 16 22 C -0.14 -2.85 8.29 71.98 0.60 -2.25 16 23 C -0.09 -2.87 8.29 22.53 0.19 -2.68 16 24 H 0.09 2.02 6.90 -2.39 -0.02 2.01 16 25 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 26 H 0.08 2.29 5.81 -2.39 -0.01 2.27 16 27 H 0.06 2.63 7.13 -2.39 -0.02 2.61 16 28 H 0.02 1.08 6.79 -2.39 -0.02 1.06 16 29 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.15 3.12 5.31 -2.91 -0.02 3.10 16 31 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.16 1.82 5.87 -2.91 -0.02 1.80 16 33 H 0.07 0.75 7.50 -2.38 -0.02 0.74 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.74 7.51 -2.39 -0.02 0.73 16 36 H 0.03 0.87 7.38 -2.39 -0.02 0.85 16 37 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.03 0.88 7.38 -2.39 -0.02 0.86 16 42 H 0.10 3.74 7.09 -2.91 -0.02 3.72 16 Total: -1.00 -81.82 334.64 5.72 -76.10 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.94 Total: 12.64 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 5.09 Total: -13.16 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -2.14 Total: -89.34 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.06 Total: -33.42 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -81.82 5.72 -76.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578245121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.519 kcal (2) G-P(sol) polarization free energy of solvation -81.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds