Wall clock time and date at job start Mon Mar 30 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46958 * 2 1 4 4 C 1.52999 * 109.46607 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46981 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.47347 * 54.99384 * 5 4 3 7 7 C 1.52999 * 109.46862 * 294.99965 * 5 4 3 8 8 C 1.50699 * 109.47318 * 174.99712 * 5 4 3 9 9 O 1.21280 * 120.00349 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99868 * 179.97438 * 8 5 4 11 11 C 1.39128 * 119.99980 * 175.81059 * 10 8 5 12 12 C 1.38644 * 120.28149 * 34.56170 * 11 10 8 13 13 C 1.38222 * 120.03250 * 179.97438 * 12 11 10 14 14 C 1.38868 * 120.61776 * 0.03924 * 13 12 11 15 15 C 1.36466 * 120.57506 * 359.97438 * 14 13 12 16 16 C 1.40746 * 119.93950 * 359.66266 * 15 14 13 17 17 C 1.41075 * 120.29863 * 180.33779 * 16 15 14 18 18 H 1.07998 * 120.00091 * 214.98465 * 17 16 15 19 19 C 1.39958 * 119.99766 * 34.99277 * 17 16 15 20 20 N 1.30857 * 120.00403 * 355.62777 * 19 17 16 21 21 Si 1.86798 * 119.99999 * 175.63553 * 19 17 16 22 22 H 1.48493 * 109.47449 * 89.99419 * 21 19 17 23 23 H 1.48502 * 109.47042 * 209.99711 * 21 19 17 24 24 H 1.48503 * 109.46831 * 329.99196 * 21 19 17 25 25 H 1.09002 * 109.46811 * 60.00625 * 1 2 3 26 26 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47522 * 300.00380 * 1 2 3 28 28 H 1.08998 * 109.47522 * 239.99620 * 2 1 3 29 29 H 1.09002 * 109.46811 * 119.99375 * 2 1 3 30 30 H 1.09002 * 109.46849 * 299.99352 * 3 2 1 31 31 H 1.08993 * 109.47398 * 59.99968 * 3 2 1 32 32 H 1.09002 * 109.46985 * 299.99267 * 4 3 2 33 33 H 1.08998 * 109.47699 * 59.99726 * 4 3 2 34 34 H 1.09006 * 109.47364 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.46906 * 299.99375 * 7 5 4 36 36 H 1.09000 * 109.47688 * 59.99456 * 7 5 4 37 37 H 0.97001 * 120.00256 * 355.80800 * 10 8 5 38 38 H 1.07995 * 119.98834 * 359.97438 * 12 11 10 39 39 H 1.08002 * 119.69275 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.71518 * 179.97438 * 14 13 12 41 41 H 1.07997 * 120.03130 * 179.97438 * 15 14 13 42 42 H 0.96994 * 120.00120 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6457 3.4243 0.8405 7 6 3.6747 3.5685 -1.3087 8 6 5.5820 2.8868 0.1220 9 8 6.1851 1.8377 0.2029 10 7 6.2550 4.0543 0.1423 11 6 7.6316 4.0603 0.3435 12 6 8.4163 3.0345 -0.1608 13 6 9.7836 3.0459 0.0417 14 6 10.3852 4.0782 0.7493 15 6 9.6368 5.1002 1.2569 16 6 8.2435 5.1165 1.0582 17 6 7.4635 6.1730 1.5735 18 1 6.4656 5.9793 1.9384 19 6 7.9827 7.4722 1.6117 20 7 9.2206 7.6930 1.2497 21 14 6.9085 8.8910 2.1796 22 1 7.0465 9.0592 3.6485 23 1 7.3345 10.1387 1.4962 24 1 5.4906 8.6029 1.8453 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.9336 0.9286 0.8892 33 1 3.9330 0.9287 -0.8908 34 1 4.0385 4.5961 -1.3094 35 1 4.1091 3.0292 -2.1505 36 1 2.5884 3.5672 -1.3979 37 1 5.7796 4.8904 0.0166 38 1 7.9592 2.2262 -0.7121 39 1 10.3897 2.2442 -0.3539 40 1 11.4548 4.0722 0.8993 41 1 10.1138 5.8984 1.8062 42 1 9.5805 8.5933 1.2765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580122110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:30 Heat of formation + Delta-G solvation = -50.605805 kcal Electronic energy + Delta-G solvation = -21008.979462 eV Core-core repulsion = 17952.311261 eV Total energy + Delta-G solvation = -3056.668201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74850 -37.48261 -36.13288 -33.78604 -33.62411 -33.20535 -29.59288 -28.99027 -27.97527 -25.37894 -24.97191 -22.77198 -21.37450 -20.90535 -20.17628 -18.97027 -17.37947 -16.67419 -16.10195 -15.69887 -15.20449 -14.71230 -14.36225 -14.04767 -13.73551 -13.46829 -13.28553 -12.98433 -12.72133 -12.45924 -12.30322 -12.14836 -11.75604 -11.66280 -11.32523 -11.22277 -11.19589 -10.99034 -10.92598 -10.83485 -10.61090 -10.45934 -10.44907 -10.05935 -9.76938 -9.27362 -9.11585 -8.73298 -7.29041 -6.93383 -6.60989 -4.43658 2.64421 2.89928 3.04390 3.05893 3.20276 3.47663 3.90743 3.95923 4.66812 4.72414 4.84924 4.94823 5.11074 5.14183 5.22817 5.42074 5.57318 5.61311 5.63913 5.70040 5.75709 5.85161 5.91547 5.97268 6.04000 6.15446 6.16589 6.34224 6.38981 6.46801 6.54629 6.59463 6.98573 7.09758 7.22485 7.31711 7.69030 7.75057 8.02124 8.10808 8.15314 8.46174 8.59792 8.85249 8.88358 9.08723 10.23872 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.004569 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.992109 B = 6127.369975 C = 7416.747607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.098 4.098 5 C -0.110 4.110 6 H 0.094 0.906 7 C -0.145 4.145 8 C 0.501 3.499 9 O -0.542 6.542 10 N -0.638 5.638 11 C 0.025 3.975 12 C -0.095 4.095 13 C -0.216 4.216 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.095 3.905 17 C -0.470 4.470 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.809 5.809 21 Si 0.913 3.087 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.402 0.598 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 -5.084 -2.768 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.136 4.136 5 C -0.132 4.132 6 H 0.112 0.888 7 C -0.203 4.203 8 C 0.288 3.712 9 O -0.420 6.420 10 N -0.280 5.280 11 C -0.069 4.069 12 C -0.115 4.115 13 C -0.236 4.236 14 C -0.140 4.140 15 C -0.160 4.160 16 C 0.091 3.909 17 C -0.501 4.501 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.436 5.436 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.238 0.762 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.096 -5.620 -2.728 13.614 hybrid contribution -0.550 1.225 0.204 1.358 sum -12.646 -4.395 -2.524 13.624 Atomic orbital electron populations 1.21779 0.96159 1.01342 1.01667 1.21529 0.95471 0.97170 1.02141 1.21694 0.95519 0.96627 1.02014 1.21382 0.94249 0.94541 1.03449 1.21310 0.92746 0.98896 1.00217 0.88822 1.21832 1.01759 1.00569 0.96132 1.20597 0.89446 0.84049 0.77091 1.90629 1.69894 1.31555 1.49922 1.42941 1.07380 1.08597 1.69117 1.17869 0.81578 1.01642 1.05810 1.20659 0.93083 0.97914 0.99822 1.20382 0.94091 1.00536 1.08573 1.20542 0.97808 0.95549 1.00077 1.21183 0.93930 0.98161 1.02707 1.17474 0.92754 0.91134 0.89543 1.19282 1.01350 0.91770 1.37731 0.90811 1.25847 0.95113 1.00321 0.92957 1.69765 1.13879 1.23034 1.36876 0.86240 0.80720 0.79876 0.79390 1.19538 1.20287 1.18777 0.92876 0.93009 0.92842 0.92056 0.92013 0.91808 0.92070 0.91163 0.91449 0.92026 0.92185 0.91572 0.76208 0.87273 0.89204 0.89336 0.85203 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.12 -1.20 4.97 -26.73 -0.13 -1.34 16 4 C -0.10 -1.26 4.03 -26.73 -0.11 -1.37 16 5 C -0.11 -1.52 2.73 -91.77 -0.25 -1.77 16 6 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 7 C -0.15 -1.68 8.84 37.16 0.33 -1.36 16 8 C 0.50 9.57 6.99 -10.99 -0.08 9.49 16 9 O -0.54 -12.17 13.33 5.56 0.07 -12.09 16 10 N -0.64 -13.14 4.88 -9.48 -0.05 -13.18 16 11 C 0.02 0.61 6.34 -83.17 -0.53 0.08 16 12 C -0.09 -2.32 8.69 -39.44 -0.34 -2.66 16 13 C -0.22 -5.11 10.04 -39.35 -0.39 -5.51 16 14 C -0.12 -2.91 9.97 -39.99 -0.40 -3.31 16 15 C -0.14 -3.64 8.61 -39.27 -0.34 -3.98 16 16 C 0.09 2.47 5.56 -106.65 -0.59 1.88 16 17 C -0.47 -11.86 8.22 -37.86 -0.31 -12.17 16 18 H 0.07 1.77 7.63 -52.49 -0.40 1.37 16 19 C 0.07 1.77 5.42 -17.32 -0.09 1.68 16 20 N -0.81 -20.41 10.62 55.55 0.59 -19.82 16 21 Si 0.91 18.11 29.56 -169.99 -5.03 13.08 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.01 7.96 -51.93 -0.41 0.59 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.71 7.47 -51.93 -0.39 0.32 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 37 H 0.40 7.48 7.40 -40.82 -0.30 7.18 16 38 H 0.11 2.64 6.19 -52.49 -0.33 2.32 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.13 3.47 6.16 -52.49 -0.32 3.15 16 42 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -28.67 339.60 -8.94 -37.60 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.62 Total: 11.77 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.03 Total: -22.48 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.54 Total: -33.00 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.67 -8.94 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580122110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.003 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds