Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46958 * 2 1 4 4 C 1.52999 * 109.46607 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46981 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.47347 * 54.99384 * 5 4 3 7 7 C 1.52999 * 109.46862 * 294.99965 * 5 4 3 8 8 C 1.50699 * 109.47318 * 174.99712 * 5 4 3 9 9 O 1.21280 * 120.00349 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99868 * 179.97438 * 8 5 4 11 11 C 1.39128 * 119.99980 * 175.81059 * 10 8 5 12 12 C 1.38644 * 120.28149 * 34.56170 * 11 10 8 13 13 C 1.38222 * 120.03250 * 179.97438 * 12 11 10 14 14 C 1.38868 * 120.61776 * 0.03924 * 13 12 11 15 15 C 1.36466 * 120.57506 * 359.97438 * 14 13 12 16 16 C 1.40746 * 119.93950 * 359.66266 * 15 14 13 17 17 C 1.41075 * 120.29863 * 180.33779 * 16 15 14 18 18 H 1.07998 * 120.00091 * 214.98465 * 17 16 15 19 19 C 1.39958 * 119.99766 * 34.99277 * 17 16 15 20 20 N 1.30857 * 120.00403 * 355.62777 * 19 17 16 21 21 Si 1.86798 * 119.99999 * 175.63553 * 19 17 16 22 22 H 1.48493 * 109.47449 * 89.99419 * 21 19 17 23 23 H 1.48502 * 109.47042 * 209.99711 * 21 19 17 24 24 H 1.48503 * 109.46831 * 329.99196 * 21 19 17 25 25 H 1.09002 * 109.46811 * 60.00625 * 1 2 3 26 26 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47522 * 300.00380 * 1 2 3 28 28 H 1.08998 * 109.47522 * 239.99620 * 2 1 3 29 29 H 1.09002 * 109.46811 * 119.99375 * 2 1 3 30 30 H 1.09002 * 109.46849 * 299.99352 * 3 2 1 31 31 H 1.08993 * 109.47398 * 59.99968 * 3 2 1 32 32 H 1.09002 * 109.46985 * 299.99267 * 4 3 2 33 33 H 1.08998 * 109.47699 * 59.99726 * 4 3 2 34 34 H 1.09006 * 109.47364 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.46906 * 299.99375 * 7 5 4 36 36 H 1.09000 * 109.47688 * 59.99456 * 7 5 4 37 37 H 0.97001 * 120.00256 * 355.80800 * 10 8 5 38 38 H 1.07995 * 119.98834 * 359.97438 * 12 11 10 39 39 H 1.08002 * 119.69275 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.71518 * 179.97438 * 14 13 12 41 41 H 1.07997 * 120.03130 * 179.97438 * 15 14 13 42 42 H 0.96994 * 120.00120 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6457 3.4243 0.8405 7 6 3.6747 3.5685 -1.3087 8 6 5.5820 2.8868 0.1220 9 8 6.1851 1.8377 0.2029 10 7 6.2550 4.0543 0.1423 11 6 7.6316 4.0603 0.3435 12 6 8.4163 3.0345 -0.1608 13 6 9.7836 3.0459 0.0417 14 6 10.3852 4.0782 0.7493 15 6 9.6368 5.1002 1.2569 16 6 8.2435 5.1165 1.0582 17 6 7.4635 6.1730 1.5735 18 1 6.4656 5.9793 1.9384 19 6 7.9827 7.4722 1.6117 20 7 9.2206 7.6930 1.2497 21 14 6.9085 8.8910 2.1796 22 1 7.0465 9.0592 3.6485 23 1 7.3345 10.1387 1.4962 24 1 5.4906 8.6029 1.8453 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.9336 0.9286 0.8892 33 1 3.9330 0.9287 -0.8908 34 1 4.0385 4.5961 -1.3094 35 1 4.1091 3.0292 -2.1505 36 1 2.5884 3.5672 -1.3979 37 1 5.7796 4.8904 0.0166 38 1 7.9592 2.2262 -0.7121 39 1 10.3897 2.2442 -0.3539 40 1 11.4548 4.0722 0.8993 41 1 10.1138 5.8984 1.8062 42 1 9.5805 8.5933 1.2765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580122110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = -64.600709 kcal Electronic energy + Delta-G solvation = -21009.586327 eV Core-core repulsion = 17952.311261 eV Total energy + Delta-G solvation = -3057.275066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33947 -39.19115 -37.22353 -35.47427 -35.47099 -34.21000 -31.48518 -30.43221 -29.23263 -27.13859 -26.09495 -24.08154 -22.99787 -22.17110 -21.55127 -20.48366 -19.22161 -18.28690 -17.69760 -16.96770 -16.64757 -16.09637 -15.90541 -15.49448 -15.02600 -14.73374 -14.49400 -14.37619 -14.10808 -13.97702 -13.61430 -13.45973 -13.07912 -12.98625 -12.84517 -12.74126 -12.53639 -12.17150 -12.10842 -11.94009 -11.82227 -11.78601 -11.60305 -11.50611 -11.30316 -11.06447 -10.87131 -10.40585 -9.24035 -8.79106 -8.44352 -6.36142 0.84197 1.06762 1.42990 1.51959 1.57060 1.86110 2.24372 2.47397 2.81416 3.67574 3.76291 3.80388 3.98121 4.23286 4.31164 4.32103 4.47313 4.55148 4.62266 4.66059 4.76594 4.81084 4.86959 4.95170 5.01060 5.06481 5.10472 5.14788 5.22412 5.24987 5.30191 5.35638 5.41511 5.46183 5.50410 5.56670 5.79719 5.88359 6.15091 6.18483 6.27231 6.66109 6.78307 6.97038 7.03496 7.44710 8.43073 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.004569 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.992109 B = 6127.369975 C = 7416.747607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.094 4.094 5 C -0.100 4.100 6 H 0.112 0.888 7 C -0.142 4.142 8 C 0.497 3.503 9 O -0.579 6.579 10 N -0.638 5.638 11 C 0.019 3.981 12 C -0.110 4.110 13 C -0.220 4.220 14 C -0.125 4.125 15 C -0.165 4.165 16 C 0.066 3.934 17 C -0.490 4.490 18 H 0.080 0.920 19 C 0.031 3.969 20 N -0.839 5.839 21 Si 0.986 3.014 22 H -0.268 1.268 23 H -0.273 1.273 24 H -0.250 1.250 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.411 0.589 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 -4.344 -2.999 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.132 4.132 5 C -0.121 4.121 6 H 0.130 0.870 7 C -0.199 4.199 8 C 0.286 3.714 9 O -0.459 6.459 10 N -0.281 5.281 11 C -0.075 4.075 12 C -0.130 4.130 13 C -0.239 4.239 14 C -0.144 4.144 15 C -0.185 4.185 16 C 0.062 3.938 17 C -0.521 4.521 18 H 0.098 0.902 19 C -0.181 4.181 20 N -0.467 5.467 21 Si 0.807 3.193 22 H -0.194 1.194 23 H -0.198 1.198 24 H -0.173 1.173 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.249 0.751 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.493 -4.890 -2.970 15.581 hybrid contribution 0.250 0.914 0.263 0.984 sum -14.242 -3.976 -2.707 15.033 Atomic orbital electron populations 1.21755 0.94821 1.01918 1.02188 1.21537 0.96622 0.96664 1.01706 1.21647 0.92865 0.97364 1.03135 1.21347 0.96489 0.93470 1.01881 1.21366 0.88281 1.00150 1.02341 0.86964 1.21848 1.03753 1.00090 0.94194 1.21628 0.91644 0.82807 0.75309 1.90603 1.71277 1.32742 1.51315 1.42991 1.06104 1.09727 1.69259 1.18034 0.83513 1.01004 1.04981 1.20826 0.93715 0.98098 1.00363 1.20692 0.94185 1.00998 1.08068 1.20776 0.99007 0.95006 0.99603 1.21216 0.94549 0.98752 1.03963 1.17823 0.93231 0.92197 0.90523 1.19505 1.01689 0.92381 1.38514 0.90212 1.26750 0.96306 1.02623 0.92452 1.69852 1.15516 1.24008 1.37278 0.85124 0.79316 0.76144 0.78672 1.19353 1.19807 1.17349 0.92144 0.92505 0.92497 0.92312 0.92793 0.90240 0.91245 0.93312 0.92590 0.91851 0.92908 0.88409 0.75149 0.87436 0.86722 0.86972 0.86616 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.13 -2.14 5.93 30.60 0.18 -1.96 16 3 C -0.11 -1.96 4.97 30.59 0.15 -1.81 16 4 C -0.09 -2.30 4.03 30.59 0.12 -2.18 16 5 C -0.10 -2.60 2.73 -11.54 -0.03 -2.64 16 6 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 7 C -0.14 -2.92 8.84 71.98 0.64 -2.28 16 8 C 0.50 18.90 6.99 87.66 0.61 19.52 16 9 O -0.58 -26.46 13.33 -3.03 -0.04 -26.50 16 10 N -0.64 -26.29 4.88 -302.29 -1.47 -27.76 16 11 C 0.02 0.96 6.34 38.87 0.25 1.21 16 12 C -0.11 -5.45 8.69 22.36 0.19 -5.26 16 13 C -0.22 -10.42 10.04 22.42 0.22 -10.20 16 14 C -0.13 -6.07 9.97 22.01 0.22 -5.86 16 15 C -0.16 -8.80 8.61 22.47 0.19 -8.60 16 16 C 0.07 3.51 5.56 -21.18 -0.12 3.39 16 17 C -0.49 -24.89 8.22 23.38 0.19 -24.70 16 18 H 0.08 3.81 7.63 -2.91 -0.02 3.79 16 19 C 0.03 1.52 5.42 85.25 0.46 1.98 16 20 N -0.84 -42.82 10.62 21.83 0.23 -42.59 16 21 Si 0.99 36.34 29.56 68.60 2.03 38.37 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 24 H -0.25 -8.60 7.11 99.48 0.71 -7.90 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.16 6.56 -2.39 -0.02 1.14 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.40 7.96 -2.39 -0.02 1.38 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.30 7.47 -2.38 -0.02 1.28 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.43 6.56 -2.39 -0.02 1.42 16 37 H 0.41 15.10 7.40 -92.71 -0.69 14.41 16 38 H 0.11 5.31 6.19 -2.91 -0.02 5.29 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.12 6.42 6.16 -2.91 -0.02 6.40 16 42 H 0.28 13.24 8.30 -92.71 -0.77 12.47 16 Total: -1.00 -62.91 339.60 5.07 -57.84 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: 0.32 Total: 41.31 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 4.00 Total: -40.67 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -1.24 Total: -70.35 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.04 Total: -26.50 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -62.91 5.07 -57.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580122110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.759 kcal (2) G-P(sol) polarization free energy of solvation -62.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds