Wall clock time and date at job start Mon Mar 30 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47238 * 240.00215 * 2 1 3 5 5 C 1.50699 * 109.47254 * 120.00181 * 2 1 3 6 6 C 1.38385 * 119.92435 * 359.97438 * 5 2 1 7 7 C 1.38342 * 120.29104 * 180.02562 * 6 5 2 8 8 C 1.37979 * 120.14224 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85586 * 0.02562 * 8 7 6 10 10 C 1.47847 * 120.14286 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99443 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99889 * 359.97142 * 10 9 8 13 13 C 1.46500 * 119.99682 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47329 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00018 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00050 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99889 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00129 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46955 * 89.99547 * 19 17 15 21 21 H 1.48490 * 109.47203 * 209.99496 * 19 17 15 22 22 H 1.48503 * 109.47103 * 329.99799 * 19 17 15 23 23 C 1.37933 * 119.92803 * 180.02562 * 5 2 1 24 24 H 1.08999 * 109.47174 * 299.99771 * 1 2 3 25 25 H 1.09004 * 109.47216 * 59.99989 * 1 2 3 26 26 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47092 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47755 * 300.00066 * 3 2 1 29 29 H 1.08999 * 109.46992 * 60.00117 * 3 2 1 30 30 H 1.09009 * 109.46884 * 299.99846 * 4 2 1 31 31 H 1.09004 * 109.47184 * 59.99776 * 4 2 1 32 32 H 1.08999 * 109.47162 * 180.02562 * 4 2 1 33 33 H 1.08001 * 119.85329 * 359.74701 * 6 5 2 34 34 H 1.07993 * 119.92336 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.06786 * 180.02562 * 8 7 6 36 36 H 0.96994 * 120.00442 * 0.02562 * 12 10 9 37 37 H 1.09009 * 109.46819 * 300.00070 * 13 12 10 38 38 H 1.09001 * 109.47363 * 59.99520 * 13 12 10 39 39 H 1.09001 * 109.47424 * 300.00132 * 14 13 12 40 40 H 1.09001 * 109.47242 * 59.99504 * 14 13 12 41 41 H 0.97001 * 119.99883 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.07460 * 359.95066 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1317 -1.2353 2.1406 7 6 1.5845 -1.8885 3.2729 8 6 2.9388 -2.0210 3.5014 9 6 3.8524 -1.4940 2.5875 10 6 5.3049 -1.6329 2.8257 11 8 6.0982 -1.1732 2.0278 12 7 5.7493 -2.2691 3.9277 13 6 7.1886 -2.4061 4.1640 14 6 7.4207 -3.1616 5.4740 15 6 8.9012 -3.3031 5.7168 16 1 9.6061 -2.8955 5.0074 17 6 9.3559 -3.9541 6.8441 18 7 8.4974 -4.4510 7.7077 19 14 11.1911 -4.1302 7.1446 20 1 11.6792 -2.9640 7.9238 21 1 11.4504 -5.3781 7.9066 22 1 11.9026 -4.1883 5.8425 23 6 3.3888 -0.8351 1.4475 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9562 0.8900 30 1 1.6767 -1.7490 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7216 -1.2491 33 1 0.0707 -1.1307 1.9684 34 1 0.8765 -2.2962 3.9790 35 1 3.2910 -2.5316 4.3856 36 1 5.1162 -2.6361 4.5643 37 1 7.6409 -2.9587 3.3404 38 1 7.6418 -1.4170 4.2301 39 1 6.9683 -2.6087 6.2974 40 1 6.9674 -4.1507 5.4083 41 1 8.8173 -4.9086 8.5009 42 1 4.0906 -0.4250 0.7364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581675497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:02 Heat of formation + Delta-G solvation = -41.257620 kcal Electronic energy + Delta-G solvation = -20454.581040 eV Core-core repulsion = 17398.318207 eV Total energy + Delta-G solvation = -3056.262833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31544 -38.79790 -36.31611 -34.90854 -32.88469 -31.39198 -30.38815 -29.25299 -27.68576 -27.45822 -25.04594 -23.47527 -22.73206 -20.99078 -20.58392 -19.08879 -17.50342 -16.53128 -16.01044 -15.55707 -15.11106 -14.92895 -14.67309 -14.48442 -14.47683 -13.94972 -13.66615 -13.29086 -13.25952 -12.73460 -12.45097 -12.29003 -12.14755 -11.93262 -11.91600 -11.81895 -11.20620 -11.19316 -11.03864 -10.95131 -10.70332 -10.63874 -10.34314 -9.84971 -9.49063 -9.22348 -9.00814 -8.84644 -8.53448 -8.34719 -6.09922 -4.12708 0.88933 1.28289 3.06812 3.29406 3.35404 3.39401 3.64472 3.92716 4.32906 4.41426 4.52215 4.74523 4.84017 4.88741 4.99021 5.14728 5.21761 5.27198 5.27911 5.39573 5.47316 5.51802 5.60560 5.66133 5.68627 5.74869 5.86516 5.96715 6.00348 6.07283 6.27151 6.30864 6.34073 6.40301 6.48159 6.72697 6.80756 6.90371 7.50787 7.60542 7.88239 7.99289 8.27027 8.61790 8.93191 9.52117 11.01747 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040772 B = 0.002946 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.582564 B = 9502.360841 C = 9987.281279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.083 4.083 6 C -0.103 4.103 7 C -0.125 4.125 8 C -0.092 4.092 9 C -0.124 4.124 10 C 0.547 3.453 11 O -0.548 6.548 12 N -0.716 5.716 13 C 0.121 3.879 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.059 4.059 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.221 7.489 -12.961 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.083 4.083 6 C -0.121 4.121 7 C -0.143 4.143 8 C -0.111 4.111 9 C -0.127 4.127 10 C 0.333 3.667 11 O -0.427 6.427 12 N -0.366 5.366 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.077 4.077 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.232 0.768 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.614 7.703 -13.342 24.162 hybrid contribution 0.685 -0.421 0.748 1.098 sum -17.928 7.282 -12.594 23.088 Atomic orbital electron populations 1.21965 0.94158 1.01959 1.01964 1.19493 0.95603 0.95163 0.92591 1.21914 1.01633 0.94418 1.01836 1.21918 1.01632 1.00220 0.96033 1.19770 0.92941 0.99219 0.96350 1.21338 0.99840 0.97099 0.93822 1.21088 0.95345 0.99999 0.97874 1.21399 0.93275 0.97940 0.98438 1.20116 0.93385 1.02215 0.96980 1.18305 0.87715 0.78732 0.81913 1.90731 1.56968 1.49182 1.45863 1.46278 1.10328 1.56610 1.23343 1.21764 0.77105 1.00778 1.00447 1.19330 0.97785 0.95296 0.90121 1.21048 0.91383 1.36589 1.06990 0.92213 1.25001 0.98115 0.95269 0.95920 1.69957 1.33979 1.37598 1.11793 0.86503 0.85065 0.77548 0.78393 1.20545 1.21159 1.19717 1.21078 0.94985 0.95792 0.95893 0.92241 0.92326 0.92241 0.92081 0.92306 0.92443 0.92447 0.92300 0.92080 0.85418 0.85507 0.85407 0.76837 0.92382 0.92390 0.95910 0.95905 0.92835 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 7.13 37.16 0.26 -0.70 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.17 8.28 37.15 0.31 -0.87 16 4 C -0.14 -1.18 8.29 37.16 0.31 -0.87 16 5 C -0.08 -0.89 4.76 -104.68 -0.50 -1.39 16 6 C -0.10 -1.00 8.97 -39.49 -0.35 -1.35 16 7 C -0.13 -1.27 10.03 -39.64 -0.40 -1.67 16 8 C -0.09 -1.12 9.54 -39.18 -0.37 -1.49 16 9 C -0.12 -1.82 5.87 -104.97 -0.62 -2.44 16 10 C 0.55 10.01 7.77 -12.33 -0.10 9.91 16 11 O -0.55 -11.82 16.35 5.32 0.09 -11.73 16 12 N -0.72 -13.09 5.51 -61.25 -0.34 -13.43 16 13 C 0.12 2.63 5.61 -4.05 -0.02 2.61 16 14 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.06 -0.78 8.25 -39.19 -0.32 -1.10 16 24 H 0.06 0.38 7.50 -51.93 -0.39 -0.01 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.38 7.51 -51.93 -0.39 -0.01 16 27 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.57 7.38 -51.93 -0.38 0.18 16 33 H 0.13 0.94 5.87 -52.49 -0.31 0.63 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.40 6.41 -52.49 -0.34 1.06 16 36 H 0.40 6.29 6.51 -40.82 -0.27 6.02 16 37 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.13 1.84 6.68 -52.49 -0.35 1.49 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -31.66 343.66 -8.42 -40.08 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.58 Total: 1.79 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.49 Total: -12.88 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.40 Total: -38.88 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.66 -8.42 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581675497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.175 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds