Wall clock time and date at job start Mon Mar 30 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47238 * 240.00215 * 2 1 3 5 5 C 1.50699 * 109.47254 * 120.00181 * 2 1 3 6 6 C 1.38385 * 119.92435 * 359.97438 * 5 2 1 7 7 C 1.38342 * 120.29104 * 180.02562 * 6 5 2 8 8 C 1.37979 * 120.14224 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85586 * 0.02562 * 8 7 6 10 10 C 1.47847 * 120.14286 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99443 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99889 * 359.97142 * 10 9 8 13 13 C 1.46500 * 119.99682 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47329 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00018 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00050 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99889 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00129 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46955 * 89.99547 * 19 17 15 21 21 H 1.48490 * 109.47203 * 209.99496 * 19 17 15 22 22 H 1.48503 * 109.47103 * 329.99799 * 19 17 15 23 23 C 1.37933 * 119.92803 * 180.02562 * 5 2 1 24 24 H 1.08999 * 109.47174 * 299.99771 * 1 2 3 25 25 H 1.09004 * 109.47216 * 59.99989 * 1 2 3 26 26 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47092 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47755 * 300.00066 * 3 2 1 29 29 H 1.08999 * 109.46992 * 60.00117 * 3 2 1 30 30 H 1.09009 * 109.46884 * 299.99846 * 4 2 1 31 31 H 1.09004 * 109.47184 * 59.99776 * 4 2 1 32 32 H 1.08999 * 109.47162 * 180.02562 * 4 2 1 33 33 H 1.08001 * 119.85329 * 359.74701 * 6 5 2 34 34 H 1.07993 * 119.92336 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.06786 * 180.02562 * 8 7 6 36 36 H 0.96994 * 120.00442 * 0.02562 * 12 10 9 37 37 H 1.09009 * 109.46819 * 300.00070 * 13 12 10 38 38 H 1.09001 * 109.47363 * 59.99520 * 13 12 10 39 39 H 1.09001 * 109.47424 * 300.00132 * 14 13 12 40 40 H 1.09001 * 109.47242 * 59.99504 * 14 13 12 41 41 H 0.97001 * 119.99883 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.07460 * 359.95066 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1317 -1.2353 2.1406 7 6 1.5845 -1.8885 3.2729 8 6 2.9388 -2.0210 3.5014 9 6 3.8524 -1.4940 2.5875 10 6 5.3049 -1.6329 2.8257 11 8 6.0982 -1.1732 2.0278 12 7 5.7493 -2.2691 3.9277 13 6 7.1886 -2.4061 4.1640 14 6 7.4207 -3.1616 5.4740 15 6 8.9012 -3.3031 5.7168 16 1 9.6061 -2.8955 5.0074 17 6 9.3559 -3.9541 6.8441 18 7 8.4974 -4.4510 7.7077 19 14 11.1911 -4.1302 7.1446 20 1 11.6792 -2.9640 7.9238 21 1 11.4504 -5.3781 7.9066 22 1 11.9026 -4.1883 5.8425 23 6 3.3888 -0.8351 1.4475 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9562 0.8900 30 1 1.6767 -1.7490 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7216 -1.2491 33 1 0.0707 -1.1307 1.9684 34 1 0.8765 -2.2962 3.9790 35 1 3.2910 -2.5316 4.3856 36 1 5.1162 -2.6361 4.5643 37 1 7.6409 -2.9587 3.3404 38 1 7.6418 -1.4170 4.2301 39 1 6.9683 -2.6087 6.2974 40 1 6.9674 -4.1507 5.4083 41 1 8.8173 -4.9086 8.5009 42 1 4.0906 -0.4250 0.7364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581675497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:02 Heat of formation + Delta-G solvation = -59.363227 kcal Electronic energy + Delta-G solvation = -20455.366158 eV Core-core repulsion = 17398.318207 eV Total energy + Delta-G solvation = -3057.047951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40583 -40.03107 -37.14508 -36.68404 -34.87379 -32.53523 -31.64164 -30.64937 -28.35358 -28.11747 -26.88191 -24.61931 -23.82677 -22.74990 -21.76214 -20.17484 -18.56551 -18.49426 -17.26919 -16.84753 -16.53463 -16.44055 -15.92218 -15.76252 -15.18814 -14.89451 -14.87086 -14.76268 -14.38480 -14.29124 -13.61337 -13.28769 -13.09724 -12.99858 -12.90296 -12.73004 -12.56517 -12.54742 -12.53143 -12.28078 -11.83167 -11.72618 -11.70272 -11.48243 -11.42019 -10.95692 -10.62533 -10.20898 -9.86357 -9.70725 -8.25930 -6.36571 -0.13763 0.38875 1.40885 1.41465 1.53012 1.83169 2.16751 2.42870 2.86235 3.08769 3.58571 3.66609 3.84460 4.11032 4.12011 4.12374 4.31940 4.38292 4.43865 4.44037 4.53142 4.77480 4.78780 4.80589 4.85514 4.91473 4.97526 5.04425 5.05530 5.16287 5.20623 5.25328 5.34702 5.37545 5.42390 5.45308 5.51582 5.54041 5.65091 5.75581 5.95218 6.13284 6.53322 6.76044 7.15141 7.32711 8.86063 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040772 B = 0.002946 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.582564 B = 9502.360841 C = 9987.281279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.083 4.083 6 C -0.091 4.091 7 C -0.119 4.119 8 C -0.096 4.096 9 C -0.150 4.150 10 C 0.546 3.454 11 O -0.589 6.589 12 N -0.711 5.711 13 C 0.140 3.860 14 C 0.024 3.976 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.071 4.071 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.136 0.864 36 H 0.409 0.591 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.267 0.733 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.359 7.599 -13.128 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.083 4.083 6 C -0.109 4.109 7 C -0.137 4.137 8 C -0.115 4.115 9 C -0.153 4.153 10 C 0.335 3.665 11 O -0.472 6.472 12 N -0.362 5.362 13 C 0.016 3.984 14 C -0.014 4.014 15 C -0.587 4.587 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.090 4.090 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.154 0.846 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.781 7.811 -13.504 25.985 hybrid contribution 1.248 -0.434 0.764 1.527 sum -19.533 7.377 -12.739 24.459 Atomic orbital electron populations 1.21960 0.92047 1.02771 1.03017 1.19570 0.97201 0.94706 0.91440 1.21914 1.00512 0.94698 1.02657 1.21918 1.00509 1.00519 0.96836 1.20046 0.91843 0.98912 0.97468 1.21773 1.01277 0.95093 0.92735 1.21478 0.94724 0.99065 0.98445 1.21564 0.94060 0.97724 0.98126 1.19879 0.91150 1.05243 0.98981 1.18910 0.89358 0.77385 0.80839 1.90695 1.58498 1.50867 1.47106 1.46074 1.09041 1.57006 1.24054 1.21288 0.79262 0.99438 0.98398 1.19132 0.96502 0.94672 0.91082 1.21452 0.92795 1.36998 1.07419 0.92334 1.25878 1.02992 0.94714 0.95549 1.70056 1.36117 1.38084 1.12272 0.85429 0.79207 0.77855 0.78469 1.19703 1.20373 1.19130 1.21062 0.96219 0.96342 0.95407 0.91482 0.91113 0.91490 0.93933 0.90655 0.92424 0.92432 0.90648 0.93933 0.82130 0.82221 0.84577 0.75355 0.93418 0.93402 0.97186 0.97187 0.92462 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.13 71.98 0.51 -0.88 16 2 C -0.03 -0.44 0.85 -52.93 -0.05 -0.49 16 3 C -0.14 -2.19 8.28 71.98 0.60 -1.60 16 4 C -0.14 -2.19 8.29 71.98 0.60 -1.60 16 5 C -0.08 -1.65 4.76 -19.90 -0.09 -1.74 16 6 C -0.09 -1.46 8.97 22.33 0.20 -1.26 16 7 C -0.12 -2.05 10.03 22.23 0.22 -1.83 16 8 C -0.10 -2.23 9.54 22.53 0.21 -2.01 16 9 C -0.15 -4.46 5.87 -20.09 -0.12 -4.58 16 10 C 0.55 20.82 7.77 86.79 0.67 21.50 16 11 O -0.59 -26.83 16.35 -3.86 -0.06 -26.89 16 12 N -0.71 -26.87 5.51 -465.98 -2.57 -29.43 16 13 C 0.14 6.30 5.61 86.38 0.48 6.79 16 14 C 0.02 1.21 5.09 29.85 0.15 1.37 16 15 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.43 5.46 84.66 0.46 0.89 16 18 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 19 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 C -0.07 -1.94 8.25 22.53 0.19 -1.75 16 24 H 0.07 0.58 7.50 -2.39 -0.02 0.56 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.58 7.51 -2.39 -0.02 0.56 16 27 H 0.04 0.81 7.38 -2.38 -0.02 0.79 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.81 7.38 -2.39 -0.02 0.79 16 33 H 0.16 1.57 5.87 -2.91 -0.02 1.55 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.14 2.82 6.41 -2.91 -0.02 2.81 16 36 H 0.41 13.22 6.51 -92.71 -0.60 12.62 16 37 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.12 3.47 6.68 -2.91 -0.02 3.45 16 Total: -1.00 -69.46 343.66 4.36 -65.10 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.40 Total: 17.56 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.28 Total: -18.08 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.28 Total: -83.70 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.46 4.36 -65.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581675497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.733 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds