Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47414 * 2 1 4 4 C 1.38304 * 119.96437 * 270.02313 * 3 2 1 5 5 C 1.38263 * 120.14321 * 179.97438 * 4 3 2 6 6 C 1.38140 * 120.06595 * 359.67702 * 5 4 3 7 7 C 1.38845 * 119.92759 * 0.59742 * 6 5 4 8 8 N 1.39931 * 120.06767 * 179.69839 * 7 6 5 9 9 C 1.34778 * 119.99802 * 326.55021 * 8 7 6 10 10 O 1.21290 * 120.00242 * 354.72922 * 9 8 7 11 11 C 1.50705 * 119.99779 * 174.72746 * 9 8 7 12 12 C 1.53001 * 109.46848 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46602 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46434 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46681 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00515 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99769 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47277 * 90.00043 * 19 17 15 21 21 H 1.48500 * 109.46913 * 210.00246 * 19 17 15 22 22 H 1.48506 * 109.46917 * 329.99978 * 19 17 15 23 23 C 1.38089 * 119.96862 * 89.99938 * 3 2 1 24 24 H 1.08999 * 109.47010 * 300.00238 * 1 2 3 25 25 H 1.09000 * 109.47124 * 60.00051 * 1 2 3 26 26 H 1.09004 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47010 * 239.99762 * 2 1 3 28 28 H 1.09000 * 109.47124 * 119.99949 * 2 1 3 29 29 H 1.08005 * 119.93163 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.96605 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.03164 * 180.32210 * 6 5 4 32 32 H 0.96995 * 119.99879 * 146.55091 * 8 7 6 33 33 H 1.08999 * 109.46557 * 60.00179 * 11 9 8 34 34 H 1.08999 * 109.47090 * 300.00185 * 11 9 8 35 35 H 1.08999 * 109.47457 * 299.99998 * 12 11 9 36 36 H 1.08994 * 109.46896 * 60.00670 * 12 11 9 37 37 H 1.08997 * 109.47294 * 299.99569 * 13 12 11 38 38 H 1.08994 * 109.47093 * 60.00614 * 13 12 11 39 39 H 1.08999 * 109.47253 * 299.99595 * 14 13 12 40 40 H 1.08999 * 109.47736 * 60.00410 * 14 13 12 41 41 H 0.97001 * 120.00185 * 179.97438 * 18 17 15 42 42 H 1.08009 * 120.03194 * 0.04421 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7226 3.3759 -1.2025 6 6 2.9482 4.0341 -0.0091 7 6 2.7239 3.3810 1.1954 8 7 2.9574 4.0429 2.4059 9 6 3.9534 4.9462 2.4988 10 8 4.7072 5.1161 1.5639 11 6 4.1305 5.7451 3.7643 12 6 5.3238 6.6898 3.6082 13 6 5.5039 7.5004 4.8933 14 6 6.6969 8.4456 4.7370 15 6 6.8739 9.2445 6.0025 16 1 6.2025 9.0935 6.8348 17 6 7.8932 10.1682 6.0977 18 7 8.7106 10.3524 5.0840 19 14 8.1131 11.1580 7.6666 20 1 9.0218 10.4298 8.5881 21 1 8.6986 12.4826 7.3382 22 1 6.7935 11.3485 8.3207 23 6 2.2623 2.0711 1.1963 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0816 1.5614 -2.1325 30 1 2.9015 3.8817 -2.1398 31 1 3.3029 5.0542 -0.0132 32 1 2.4025 3.8516 3.1781 33 1 4.3104 5.0679 4.5992 34 1 3.2287 6.3267 3.9560 35 1 6.2254 6.1079 3.4168 36 1 5.1443 7.3670 2.7732 37 1 4.6025 8.0824 5.0851 38 1 5.6836 6.8230 5.7280 39 1 7.5985 7.8640 4.5449 40 1 6.5169 9.1231 3.9023 41 1 9.4274 11.0025 5.1509 42 1 2.0829 1.5617 2.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -47.806623 kcal Electronic energy + Delta-G solvation = -19771.755298 eV Core-core repulsion = 16715.208478 eV Total energy + Delta-G solvation = -3056.546819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65007 -38.89932 -35.47432 -34.82662 -33.83457 -32.63608 -30.53582 -29.80292 -28.89406 -25.73431 -24.31785 -23.12185 -22.30121 -21.28481 -20.00624 -19.91243 -17.64897 -16.80797 -16.37316 -16.12894 -15.90065 -15.27769 -14.70572 -14.44733 -14.20477 -14.00736 -13.74209 -13.68227 -13.29227 -12.66150 -12.56593 -12.32912 -12.00780 -11.85416 -11.71670 -11.61614 -11.37442 -11.12683 -10.99367 -10.56896 -10.51100 -10.44220 -10.43423 -9.85816 -9.62544 -9.24245 -8.99491 -8.92980 -8.30724 -8.23338 -5.95376 -3.97989 1.12551 1.21392 2.59089 2.94570 3.33928 3.39970 3.43076 3.63785 4.44737 4.48582 4.59232 4.68410 4.86699 4.99851 5.02620 5.15131 5.23138 5.24059 5.29980 5.36157 5.39913 5.40817 5.56091 5.66500 5.76756 5.81239 5.89617 6.10077 6.15352 6.22220 6.26879 6.39510 6.42912 6.51856 6.81173 6.89797 6.99142 7.18108 7.27188 7.73621 7.89253 8.05582 8.08672 8.47395 9.09646 9.65643 11.15885 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.055190 B = 0.002313 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.215508 B =12104.803263 C =12456.125253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.066 4.066 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.127 4.127 7 C 0.156 3.844 8 N -0.682 5.682 9 C 0.511 3.489 10 O -0.513 6.513 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.148 4.148 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.067 -20.399 -9.770 28.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.157 4.157 5 C -0.115 4.115 6 C -0.147 4.147 7 C 0.061 3.939 8 N -0.328 5.328 9 C 0.300 3.700 10 O -0.387 6.387 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.169 4.169 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.246 0.754 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.337 -20.094 -10.445 28.521 hybrid contribution -0.036 0.508 1.261 1.360 sum -17.373 -19.586 -9.184 27.745 Atomic orbital electron populations 1.21746 0.94683 1.01655 1.02279 1.20534 0.96170 0.92545 1.02899 1.19636 0.98438 0.95976 0.92584 1.20973 1.02080 0.95291 0.97400 1.21039 0.98056 0.94683 0.97763 1.21200 1.01412 1.01136 0.90956 1.17778 0.98693 0.91297 0.86106 1.43774 1.34762 1.42031 1.12244 1.21348 0.78858 0.79005 0.90780 1.90727 1.42802 1.65044 1.40120 1.21828 1.02703 0.98967 0.94234 1.21475 0.95559 0.97125 1.00055 1.21650 1.00712 0.97909 0.94514 1.19100 0.92130 0.93578 0.96961 1.21278 1.13485 1.20797 1.00309 0.92749 1.25050 0.96013 0.97221 0.96344 1.69974 1.17705 1.35241 1.30506 0.86605 0.78252 0.79537 0.83652 1.20711 1.21253 1.19928 1.20726 1.05187 0.92681 0.98308 0.92554 0.92501 0.92436 0.90943 0.91060 0.86213 0.85746 0.84756 0.75436 0.88821 0.88691 0.91690 0.91694 0.93414 0.93418 0.96576 0.96566 0.93038 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.47 16 2 C -0.08 -0.55 6.06 -27.89 -0.17 -0.72 16 3 C -0.07 -0.59 5.13 -104.66 -0.54 -1.13 16 4 C -0.14 -1.29 9.70 -39.55 -0.38 -1.68 16 5 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 6 C -0.13 -1.61 8.66 -39.39 -0.34 -1.95 16 7 C 0.16 1.82 6.28 -83.70 -0.53 1.29 16 8 N -0.68 -7.27 5.34 -9.86 -0.05 -7.32 16 9 C 0.51 7.03 7.57 -10.98 -0.08 6.94 16 10 O -0.51 -9.14 13.68 5.55 0.08 -9.06 16 11 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 12 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 13 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.15 -1.44 9.61 -39.40 -0.38 -1.82 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.13 1.93 6.43 -52.49 -0.34 1.59 16 32 H 0.41 2.90 8.82 -40.82 -0.36 2.54 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -33.83 352.12 -9.36 -43.19 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.99 Total: -1.58 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -3.41 Total: -20.62 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.68 Total: -34.13 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.83 -9.36 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.613 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds