Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47414 * 2 1 4 4 C 1.38304 * 119.96437 * 270.02313 * 3 2 1 5 5 C 1.38263 * 120.14321 * 179.97438 * 4 3 2 6 6 C 1.38140 * 120.06595 * 359.67702 * 5 4 3 7 7 C 1.38845 * 119.92759 * 0.59742 * 6 5 4 8 8 N 1.39931 * 120.06767 * 179.69839 * 7 6 5 9 9 C 1.34778 * 119.99802 * 326.55021 * 8 7 6 10 10 O 1.21290 * 120.00242 * 354.72922 * 9 8 7 11 11 C 1.50705 * 119.99779 * 174.72746 * 9 8 7 12 12 C 1.53001 * 109.46848 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46602 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46434 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46681 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00515 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99769 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47277 * 90.00043 * 19 17 15 21 21 H 1.48500 * 109.46913 * 210.00246 * 19 17 15 22 22 H 1.48506 * 109.46917 * 329.99978 * 19 17 15 23 23 C 1.38089 * 119.96862 * 89.99938 * 3 2 1 24 24 H 1.08999 * 109.47010 * 300.00238 * 1 2 3 25 25 H 1.09000 * 109.47124 * 60.00051 * 1 2 3 26 26 H 1.09004 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47010 * 239.99762 * 2 1 3 28 28 H 1.09000 * 109.47124 * 119.99949 * 2 1 3 29 29 H 1.08005 * 119.93163 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.96605 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.03164 * 180.32210 * 6 5 4 32 32 H 0.96995 * 119.99879 * 146.55091 * 8 7 6 33 33 H 1.08999 * 109.46557 * 60.00179 * 11 9 8 34 34 H 1.08999 * 109.47090 * 300.00185 * 11 9 8 35 35 H 1.08999 * 109.47457 * 299.99998 * 12 11 9 36 36 H 1.08994 * 109.46896 * 60.00670 * 12 11 9 37 37 H 1.08997 * 109.47294 * 299.99569 * 13 12 11 38 38 H 1.08994 * 109.47093 * 60.00614 * 13 12 11 39 39 H 1.08999 * 109.47253 * 299.99595 * 14 13 12 40 40 H 1.08999 * 109.47736 * 60.00410 * 14 13 12 41 41 H 0.97001 * 120.00185 * 179.97438 * 18 17 15 42 42 H 1.08009 * 120.03194 * 0.04421 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7226 3.3759 -1.2025 6 6 2.9482 4.0341 -0.0091 7 6 2.7239 3.3810 1.1954 8 7 2.9574 4.0429 2.4059 9 6 3.9534 4.9462 2.4988 10 8 4.7072 5.1161 1.5639 11 6 4.1305 5.7451 3.7643 12 6 5.3238 6.6898 3.6082 13 6 5.5039 7.5004 4.8933 14 6 6.6969 8.4456 4.7370 15 6 6.8739 9.2445 6.0025 16 1 6.2025 9.0935 6.8348 17 6 7.8932 10.1682 6.0977 18 7 8.7106 10.3524 5.0840 19 14 8.1131 11.1580 7.6666 20 1 9.0218 10.4298 8.5881 21 1 8.6986 12.4826 7.3382 22 1 6.7935 11.3485 8.3207 23 6 2.2623 2.0711 1.1963 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0816 1.5614 -2.1325 30 1 2.9015 3.8817 -2.1398 31 1 3.3029 5.0542 -0.0132 32 1 2.4025 3.8516 3.1781 33 1 4.3104 5.0679 4.5992 34 1 3.2287 6.3267 3.9560 35 1 6.2254 6.1079 3.4168 36 1 5.1443 7.3670 2.7732 37 1 4.6025 8.0824 5.0851 38 1 5.6836 6.8230 5.7280 39 1 7.5985 7.8640 4.5449 40 1 6.5169 9.1231 3.9023 41 1 9.4274 11.0025 5.1509 42 1 2.0829 1.5617 2.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -67.294234 kcal Electronic energy + Delta-G solvation = -19772.600344 eV Core-core repulsion = 16715.208478 eV Total energy + Delta-G solvation = -3057.391866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60455 -39.79471 -36.76984 -36.12576 -34.70371 -34.44959 -31.85048 -30.81021 -29.87145 -27.47105 -25.03588 -24.53661 -23.22197 -22.44289 -21.62386 -20.84912 -18.57781 -18.39973 -17.76849 -17.19125 -16.93774 -16.51442 -16.18033 -15.49915 -15.45814 -14.94140 -14.55635 -14.52371 -14.34888 -14.11557 -13.72634 -13.61446 -13.32214 -13.26617 -12.83934 -12.70510 -12.48337 -12.34671 -12.17799 -12.14404 -11.94198 -11.70277 -11.42351 -11.37138 -11.30967 -11.14598 -10.77776 -10.55358 -9.70810 -9.08487 -8.18968 -6.31159 0.29385 0.42249 1.40138 1.42478 1.53518 1.57700 2.03597 2.41713 2.83942 3.13662 3.68649 3.82317 3.95765 4.00915 4.12985 4.21691 4.33143 4.40099 4.52208 4.58538 4.62452 4.66976 4.70111 4.73987 4.81793 4.86363 5.10172 5.12172 5.15115 5.17378 5.31784 5.35137 5.37224 5.40100 5.45337 5.55986 5.58673 5.69960 5.77685 5.87835 6.09358 6.24824 6.41815 6.87430 7.12834 7.38426 8.93198 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.055190 B = 0.002313 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.215508 B =12104.803263 C =12456.125253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.066 4.066 4 C -0.139 4.139 5 C -0.107 4.107 6 C -0.156 4.156 7 C 0.135 3.865 8 N -0.664 5.664 9 C 0.511 3.489 10 O -0.565 6.565 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.095 4.095 14 C 0.017 3.983 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.146 4.146 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.429 0.571 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.062 0.938 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.207 -22.246 -8.058 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.067 4.067 4 C -0.157 4.157 5 C -0.126 4.126 6 C -0.176 4.176 7 C 0.041 3.959 8 N -0.310 5.310 9 C 0.300 3.700 10 O -0.442 6.442 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.268 0.732 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.532 -21.976 -8.708 30.664 hybrid contribution 0.616 1.024 0.633 1.353 sum -18.916 -20.952 -8.075 29.360 Atomic orbital electron populations 1.21734 0.93925 1.02492 1.02028 1.20593 0.96687 0.90777 1.03885 1.20035 0.97279 0.97199 0.92183 1.21286 1.01033 0.94648 0.98772 1.21234 0.98213 0.95547 0.97559 1.21173 1.03263 1.00529 0.92631 1.17964 0.99750 0.92320 0.85875 1.43520 1.33912 1.40829 1.12788 1.21490 0.78852 0.79246 0.90365 1.90721 1.44947 1.66750 1.41798 1.21698 1.01381 0.98667 0.94671 1.21260 0.97196 0.97239 0.97819 1.21445 0.98276 0.97260 0.96317 1.19067 0.93646 0.93871 0.95378 1.21758 1.13817 1.21126 1.01185 0.91500 1.26114 0.95608 0.98588 1.00261 1.70134 1.18449 1.36135 1.33113 0.85371 0.78876 0.77517 0.78806 1.19714 1.20996 1.18280 1.20996 1.04135 0.91747 0.99749 0.92784 0.92820 0.91078 0.89966 0.90147 0.83901 0.84764 0.87508 0.73179 0.85718 0.85799 0.93802 0.93804 0.91957 0.91888 0.99740 0.99739 0.92877 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 71.98 0.71 -0.53 16 2 C -0.08 -0.83 6.06 29.85 0.18 -0.65 16 3 C -0.07 -1.06 5.13 -19.89 -0.10 -1.16 16 4 C -0.14 -2.39 9.70 22.29 0.22 -2.17 16 5 C -0.11 -2.30 10.04 22.25 0.22 -2.07 16 6 C -0.16 -4.12 8.66 22.39 0.19 -3.93 16 7 C 0.14 3.08 6.28 38.15 0.24 3.32 16 8 N -0.66 -13.35 5.34 -303.50 -1.62 -14.97 16 9 C 0.51 13.92 7.57 87.66 0.66 14.59 16 10 O -0.56 -21.12 13.68 -3.06 -0.04 -21.16 16 11 C -0.12 -2.96 5.70 29.85 0.17 -2.79 16 12 C -0.10 -3.46 4.50 30.60 0.14 -3.32 16 13 C -0.10 -3.86 5.15 30.60 0.16 -3.70 16 14 C 0.02 0.96 4.97 29.85 0.15 1.11 16 15 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 17 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 18 N -0.94 -59.31 13.29 21.45 0.28 -59.02 16 19 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 C -0.15 -2.55 9.61 22.39 0.22 -2.34 16 24 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 28 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 30 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.11 3.37 6.43 -2.91 -0.02 3.35 16 32 H 0.43 4.97 8.82 -92.71 -0.82 4.15 16 33 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 36 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -76.86 352.12 4.67 -72.19 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.17 Total: 10.87 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 3.85 Total: -34.86 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.34 Total: -73.99 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.04 Total: -21.16 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.86 4.67 -72.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.893 kcal (2) G-P(sol) polarization free energy of solvation -76.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds