Wall clock time and date at job start Mon Mar 30 2020 01:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38303 * 119.96667 * 2 1 4 4 C 1.38261 * 120.13806 * 180.25476 * 3 2 1 5 5 C 1.38135 * 120.07149 * 359.49010 * 4 3 2 6 6 C 1.50708 * 120.03513 * 180.25728 * 5 4 3 7 7 C 1.38847 * 119.92822 * 0.48321 * 5 4 3 8 8 N 1.39925 * 120.07067 * 179.74513 * 7 5 4 9 9 C 1.34775 * 119.99840 * 145.30860 * 8 7 5 10 10 O 1.21287 * 119.99948 * 4.50796 * 9 8 7 11 11 C 1.50703 * 120.00170 * 184.49594 * 9 8 7 12 12 C 1.52996 * 109.47248 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47281 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47281 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46868 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00260 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47467 * 59.99950 * 19 17 15 21 21 H 1.48502 * 109.47201 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46892 * 299.99639 * 19 17 15 23 23 C 1.38089 * 119.95975 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.46954 * 89.99483 * 1 2 3 25 25 H 1.08995 * 109.47000 * 210.00570 * 1 2 3 26 26 H 1.09006 * 109.46692 * 330.00639 * 1 2 3 27 27 H 1.08000 * 119.92965 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.96217 * 179.74224 * 4 3 2 29 29 H 1.08995 * 109.46623 * 270.22982 * 6 5 4 30 30 H 1.08999 * 109.47068 * 30.22654 * 6 5 4 31 31 H 1.08994 * 109.46938 * 150.23260 * 6 5 4 32 32 H 0.96997 * 120.00499 * 325.32005 * 8 7 5 33 33 H 1.09001 * 109.46982 * 300.00678 * 11 9 8 34 34 H 1.09006 * 109.46646 * 60.00466 * 11 9 8 35 35 H 1.09001 * 109.47345 * 300.00042 * 12 11 9 36 36 H 1.09006 * 109.47254 * 60.00425 * 12 11 9 37 37 H 1.09005 * 109.47286 * 300.00146 * 13 12 11 38 38 H 1.08998 * 109.46900 * 59.99649 * 13 12 11 39 39 H 1.09001 * 109.47345 * 299.99843 * 14 13 12 40 40 H 1.09001 * 109.46826 * 60.00386 * 14 13 12 41 41 H 0.97002 * 120.00538 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.03955 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5805 1.2023 -0.0053 5 6 4.2762 0.0090 0.0000 6 6 5.7833 0.0145 0.0000 7 6 3.5856 -1.1956 0.0005 8 7 4.2874 -2.4061 0.0005 9 6 3.7954 -3.4703 0.6653 10 8 2.7062 -3.4040 1.1947 11 6 4.5984 -4.7427 0.7505 12 6 3.8180 -5.7855 1.5533 13 6 4.6335 -7.0771 1.6404 14 6 3.8534 -8.1196 2.4436 15 6 4.6565 -9.3920 2.5289 16 1 5.6264 -9.4510 2.0576 17 6 4.1533 -10.4805 3.2094 18 7 2.9724 -10.4086 3.7836 19 14 5.1491 -12.0574 3.3156 20 1 6.4438 -11.7810 3.9882 21 1 4.3918 -13.0694 4.0952 22 1 5.4028 -12.5757 1.9473 23 6 2.1967 -1.1964 0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6562 2.1325 -0.0004 28 1 4.1171 2.1396 -0.0095 29 1 6.1466 0.0154 -1.0276 30 1 6.1433 0.9060 0.5135 31 1 6.1498 -0.8740 0.5142 32 1 5.1281 -2.4794 -0.4777 33 1 4.7847 -5.1227 -0.2540 34 1 5.5487 -4.5401 1.2445 35 1 3.6313 -5.4056 2.5578 36 1 2.8678 -5.9880 1.0590 37 1 4.8206 -7.4571 0.6360 38 1 5.5835 -6.8742 2.1348 39 1 3.6667 -7.7394 3.4480 40 1 2.9032 -8.3225 1.9495 41 1 2.6185 -11.1742 4.2627 42 1 1.6566 -2.1317 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588148095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:08 Heat of formation + Delta-G solvation = -46.749210 kcal Electronic energy + Delta-G solvation = -20109.756254 eV Core-core repulsion = 17053.255288 eV Total energy + Delta-G solvation = -3056.500966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75846 -38.85015 -35.37983 -34.88508 -33.46342 -32.65914 -30.50253 -29.56088 -29.08241 -25.81838 -25.01141 -23.44397 -22.11676 -20.86130 -20.25685 -20.00057 -17.33164 -16.87768 -16.14754 -16.00170 -15.77747 -15.22672 -14.54585 -14.39069 -14.14839 -13.84281 -13.75192 -13.49110 -13.06689 -12.88725 -12.63527 -12.35526 -12.12971 -11.83555 -11.74566 -11.62912 -11.55373 -11.36612 -10.97987 -10.55570 -10.54139 -10.43173 -10.36959 -9.80069 -9.62181 -9.23899 -9.00320 -8.71126 -8.30424 -8.18680 -5.95237 -3.97957 1.10572 1.25980 2.59028 2.96808 3.35244 3.39685 3.41829 3.60297 4.48615 4.55857 4.63833 4.73619 4.89640 4.96129 5.10724 5.24445 5.27959 5.29585 5.32276 5.40011 5.41599 5.46601 5.59019 5.70825 5.74673 5.82713 5.98744 6.10150 6.15294 6.26583 6.28145 6.35337 6.49932 6.54079 6.81275 6.93654 6.99365 7.18244 7.28165 7.73416 7.89382 8.05743 8.09730 8.47470 9.09536 9.65655 11.16076 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034727 B = 0.002658 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.094278 B =10530.572492 C =11202.841527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.101 4.101 5 C -0.123 4.123 6 C -0.113 4.113 7 C 0.152 3.848 8 N -0.680 5.680 9 C 0.511 3.489 10 O -0.514 6.514 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.119 4.119 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 24.734 -10.764 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.156 4.156 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.170 4.170 7 C 0.058 3.942 8 N -0.325 5.325 9 C 0.300 3.700 10 O -0.388 6.388 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.139 4.139 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.246 0.754 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.643 24.582 -10.237 26.679 hybrid contribution 0.976 -0.894 -0.112 1.329 sum 2.619 23.687 -10.349 25.982 Atomic orbital electron populations 1.20790 0.91035 1.02992 1.02260 1.19825 0.96211 0.92625 0.98885 1.20969 0.94093 0.97446 1.03043 1.20781 0.94021 0.96793 1.00362 1.19679 0.96042 0.91898 1.04927 1.20715 0.91060 1.03074 1.02159 1.17618 0.91319 0.84885 1.00407 1.43723 1.25983 1.09924 1.52906 1.21348 0.87056 0.84921 0.76685 1.90703 1.20780 1.82608 1.44682 1.21825 0.99995 0.92267 1.03630 1.21473 0.98805 0.94215 0.99705 1.21650 0.98534 0.94174 1.00422 1.19089 0.95315 0.92307 0.94978 1.21244 1.03612 0.97620 1.33504 0.92806 1.25041 0.95039 0.98837 0.95633 1.69961 1.17308 1.30853 1.35351 0.86668 0.80142 0.83154 0.78071 1.20280 1.21312 1.20282 1.21228 0.92522 0.99059 1.01125 0.91209 0.91198 0.91569 0.86182 0.85902 0.91264 0.91220 0.91658 0.75447 0.88785 0.88777 0.91693 0.91685 0.93420 0.93432 0.96587 0.96589 0.92968 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.07 -0.84 5.88 -104.65 -0.62 -1.45 16 3 C -0.14 -1.32 9.70 -39.55 -0.38 -1.71 16 4 C -0.10 -0.94 9.70 -39.61 -0.38 -1.32 16 5 C -0.12 -1.23 5.90 -104.43 -0.62 -1.85 16 6 C -0.11 -0.81 9.47 36.01 0.34 -0.46 16 7 C 0.15 1.83 6.29 -83.69 -0.53 1.30 16 8 N -0.68 -7.39 4.75 -9.86 -0.05 -7.43 16 9 C 0.51 7.06 7.68 -10.98 -0.08 6.98 16 10 O -0.51 -9.12 13.40 5.55 0.07 -9.04 16 11 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 12 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 13 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.12 -1.57 8.35 -39.39 -0.33 -1.90 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.06 0.46 7.17 -51.93 -0.37 0.09 16 32 H 0.41 3.08 7.85 -40.82 -0.32 2.76 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.14 2.09 6.20 -52.48 -0.33 1.76 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -33.85 349.14 -9.09 -42.93 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.89 Total: -1.05 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.20 Total: -20.73 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.69 Total: -34.27 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.85 -9.09 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.815 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds