Wall clock time and date at job start Mon Mar 30 2020 01:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38303 * 119.96667 * 2 1 4 4 C 1.38261 * 120.13806 * 180.25476 * 3 2 1 5 5 C 1.38135 * 120.07149 * 359.49010 * 4 3 2 6 6 C 1.50708 * 120.03513 * 180.25728 * 5 4 3 7 7 C 1.38847 * 119.92822 * 0.48321 * 5 4 3 8 8 N 1.39925 * 120.07067 * 179.74513 * 7 5 4 9 9 C 1.34775 * 119.99840 * 145.30860 * 8 7 5 10 10 O 1.21287 * 119.99948 * 4.50796 * 9 8 7 11 11 C 1.50703 * 120.00170 * 184.49594 * 9 8 7 12 12 C 1.52996 * 109.47248 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47281 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47281 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46868 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00260 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47467 * 59.99950 * 19 17 15 21 21 H 1.48502 * 109.47201 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46892 * 299.99639 * 19 17 15 23 23 C 1.38089 * 119.95975 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.46954 * 89.99483 * 1 2 3 25 25 H 1.08995 * 109.47000 * 210.00570 * 1 2 3 26 26 H 1.09006 * 109.46692 * 330.00639 * 1 2 3 27 27 H 1.08000 * 119.92965 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.96217 * 179.74224 * 4 3 2 29 29 H 1.08995 * 109.46623 * 270.22982 * 6 5 4 30 30 H 1.08999 * 109.47068 * 30.22654 * 6 5 4 31 31 H 1.08994 * 109.46938 * 150.23260 * 6 5 4 32 32 H 0.96997 * 120.00499 * 325.32005 * 8 7 5 33 33 H 1.09001 * 109.46982 * 300.00678 * 11 9 8 34 34 H 1.09006 * 109.46646 * 60.00466 * 11 9 8 35 35 H 1.09001 * 109.47345 * 300.00042 * 12 11 9 36 36 H 1.09006 * 109.47254 * 60.00425 * 12 11 9 37 37 H 1.09005 * 109.47286 * 300.00146 * 13 12 11 38 38 H 1.08998 * 109.46900 * 59.99649 * 13 12 11 39 39 H 1.09001 * 109.47345 * 299.99843 * 14 13 12 40 40 H 1.09001 * 109.46826 * 60.00386 * 14 13 12 41 41 H 0.97002 * 120.00538 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.03955 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5805 1.2023 -0.0053 5 6 4.2762 0.0090 0.0000 6 6 5.7833 0.0145 0.0000 7 6 3.5856 -1.1956 0.0005 8 7 4.2874 -2.4061 0.0005 9 6 3.7954 -3.4703 0.6653 10 8 2.7062 -3.4040 1.1947 11 6 4.5984 -4.7427 0.7505 12 6 3.8180 -5.7855 1.5533 13 6 4.6335 -7.0771 1.6404 14 6 3.8534 -8.1196 2.4436 15 6 4.6565 -9.3920 2.5289 16 1 5.6264 -9.4510 2.0576 17 6 4.1533 -10.4805 3.2094 18 7 2.9724 -10.4086 3.7836 19 14 5.1491 -12.0574 3.3156 20 1 6.4438 -11.7810 3.9882 21 1 4.3918 -13.0694 4.0952 22 1 5.4028 -12.5757 1.9473 23 6 2.1967 -1.1964 0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6562 2.1325 -0.0004 28 1 4.1171 2.1396 -0.0095 29 1 6.1466 0.0154 -1.0276 30 1 6.1433 0.9060 0.5135 31 1 6.1498 -0.8740 0.5142 32 1 5.1281 -2.4794 -0.4777 33 1 4.7847 -5.1227 -0.2540 34 1 5.5487 -4.5401 1.2445 35 1 3.6313 -5.4056 2.5578 36 1 2.8678 -5.9880 1.0590 37 1 4.8206 -7.4571 0.6360 38 1 5.5835 -6.8742 2.1348 39 1 3.6667 -7.7394 3.4480 40 1 2.9032 -8.3225 1.9495 41 1 2.6185 -11.1742 4.2627 42 1 1.6566 -2.1317 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:08 Heat of formation + Delta-G solvation = -66.227814 kcal Electronic energy + Delta-G solvation = -20110.600910 eV Core-core repulsion = 17053.255288 eV Total energy + Delta-G solvation = -3057.345622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70390 -39.78946 -36.73265 -36.15832 -34.63656 -34.24333 -31.89898 -30.47561 -30.09318 -27.51858 -25.78590 -24.75394 -23.45643 -21.86055 -21.60375 -21.26628 -18.44647 -18.25041 -17.81464 -17.08308 -16.57135 -16.50896 -16.22155 -15.59944 -15.17245 -14.86353 -14.68171 -14.51421 -14.11677 -13.89212 -13.76112 -13.61161 -13.49370 -13.30553 -12.83581 -12.79175 -12.58860 -12.38163 -12.32828 -12.17794 -12.15453 -12.11312 -11.40111 -11.35998 -11.26611 -11.13541 -10.75026 -10.54771 -9.52681 -9.01384 -8.18933 -6.31324 0.29188 0.43779 1.40125 1.44216 1.52045 1.56516 2.04764 2.41875 2.80476 3.13738 3.66985 3.90804 3.93855 4.01048 4.12332 4.14150 4.30619 4.37542 4.56199 4.61745 4.66517 4.75921 4.77681 4.80952 4.83673 4.84679 4.88140 4.94930 5.13784 5.16924 5.29292 5.32838 5.35810 5.39140 5.46519 5.56034 5.58436 5.71266 5.77524 5.87681 6.13077 6.24743 6.41158 6.87213 7.12780 7.38388 8.93199 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034727 B = 0.002658 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.094278 B =10530.572492 C =11202.841527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.102 4.102 5 C -0.123 4.123 6 C -0.113 4.113 7 C 0.127 3.873 8 N -0.661 5.661 9 C 0.509 3.491 10 O -0.564 6.564 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.095 4.095 14 C 0.019 3.981 15 C -0.543 4.543 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.264 1.264 23 C -0.148 4.148 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.427 0.573 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.062 0.938 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 26.183 -12.045 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.169 4.169 7 C 0.033 3.967 8 N -0.307 5.307 9 C 0.299 3.701 10 O -0.442 6.442 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.018 4.018 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.169 4.169 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.266 0.734 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.072 0.928 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.584 26.062 -11.557 28.876 hybrid contribution 0.022 -1.256 0.285 1.288 sum 4.605 24.806 -11.272 27.634 Atomic orbital electron populations 1.20809 0.90100 1.03027 1.02980 1.20094 0.97225 0.92711 0.99155 1.21314 0.94715 0.97684 1.01779 1.21222 0.94057 0.97806 0.98980 1.20047 0.97758 0.91172 1.03518 1.20794 0.88733 1.03822 1.03556 1.17833 0.91162 0.85894 1.01785 1.43466 1.26262 1.09015 1.52006 1.21507 0.86425 0.85791 0.76348 1.90702 1.22938 1.83484 1.47061 1.21696 0.99808 0.90238 1.04653 1.21257 0.98340 0.94558 0.99331 1.21443 0.98304 0.93460 1.00062 1.19052 0.94822 0.93998 0.93976 1.21736 1.04283 0.98512 1.33533 0.91492 1.26103 0.96184 1.03094 0.95048 1.70126 1.19367 1.32148 1.36269 0.85434 0.78572 0.77955 0.78683 1.18859 1.21118 1.18871 1.21194 0.93537 0.98737 1.03412 0.90129 0.92879 0.89751 0.83630 0.82830 0.89410 0.89845 0.91585 0.73351 0.85764 0.85787 0.93880 0.93769 0.91901 0.91936 0.99792 0.99767 0.92846 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 10.01 71.24 0.71 -1.35 16 2 C -0.09 -2.05 5.88 -19.88 -0.12 -2.17 16 3 C -0.14 -2.39 9.70 22.29 0.22 -2.18 16 4 C -0.10 -1.62 9.70 22.25 0.22 -1.41 16 5 C -0.12 -2.20 5.90 -19.74 -0.12 -2.31 16 6 C -0.11 -1.23 9.47 71.24 0.67 -0.55 16 7 C 0.13 3.02 6.29 38.15 0.24 3.26 16 8 N -0.66 -13.75 4.75 -303.50 -1.44 -15.19 16 9 C 0.51 14.11 7.68 87.66 0.67 14.78 16 10 O -0.56 -21.27 13.40 -3.05 -0.04 -21.31 16 11 C -0.12 -2.99 5.70 29.85 0.17 -2.82 16 12 C -0.10 -3.46 4.50 30.59 0.14 -3.33 16 13 C -0.10 -3.85 5.15 30.59 0.16 -3.70 16 14 C 0.02 1.03 4.97 29.85 0.15 1.18 16 15 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 17 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 18 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 19 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 C -0.15 -4.10 8.35 22.39 0.19 -3.92 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 26 H 0.08 1.19 8.09 -2.38 -0.02 1.17 16 27 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 31 H 0.07 0.72 7.17 -2.39 -0.02 0.70 16 32 H 0.43 5.43 7.85 -92.71 -0.73 4.70 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 37 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.11 3.65 6.20 -2.91 -0.02 3.64 16 Total: -1.00 -77.62 349.14 5.09 -72.53 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.27 Total: 12.02 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.00 Total: -35.78 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.16 Total: -74.35 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.04 Total: -21.31 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -77.62 5.09 -72.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.298 kcal (2) G-P(sol) polarization free energy of solvation -77.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds