Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47034 * 2 1 4 4 C 1.38131 * 120.03850 * 265.00288 * 3 2 1 5 5 C 1.38259 * 120.07067 * 179.72221 * 4 3 2 6 6 C 1.38311 * 120.14192 * 0.25219 * 5 4 3 7 7 C 1.38085 * 120.06844 * 0.02562 * 6 5 4 8 8 C 1.38854 * 120.03484 * 85.25158 * 3 2 1 9 9 N 1.39932 * 120.07054 * 0.02626 * 8 3 2 10 10 C 1.34773 * 120.00193 * 145.55439 * 9 8 3 11 11 O 1.21296 * 119.99828 * 4.49252 * 10 9 8 12 12 C 1.50693 * 120.00254 * 184.48543 * 10 9 8 13 13 C 1.52997 * 109.47629 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47443 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47074 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47075 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99861 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99681 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00249 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99571 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46722 * 59.99981 * 20 18 16 22 22 H 1.48494 * 109.46733 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47025 * 300.00178 * 20 18 16 24 24 H 1.08998 * 109.47639 * 60.00125 * 1 2 3 25 25 H 1.09001 * 109.46948 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47711 * 299.99359 * 1 2 3 27 27 H 1.08995 * 109.47462 * 240.00181 * 2 1 3 28 28 H 1.08998 * 109.47639 * 119.99875 * 2 1 3 29 29 H 1.07994 * 119.96177 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.92837 * 180.22993 * 5 4 3 31 31 H 1.08000 * 119.95901 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.03388 * 180.02562 * 7 6 5 33 33 H 0.97000 * 119.99633 * 325.54992 * 9 8 3 34 34 H 1.09001 * 109.47313 * 300.00514 * 12 10 9 35 35 H 1.08999 * 109.47069 * 60.00257 * 12 10 9 36 36 H 1.09001 * 109.47157 * 300.00565 * 13 12 10 37 37 H 1.09002 * 109.47210 * 60.00102 * 13 12 10 38 38 H 1.09001 * 109.46758 * 299.99264 * 14 13 12 39 39 H 1.08994 * 109.47139 * 60.00292 * 14 13 12 40 40 H 1.09001 * 109.47359 * 300.00006 * 15 14 13 41 41 H 1.09002 * 109.47377 * 59.99768 * 15 14 13 42 42 H 0.96996 * 119.99484 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3609 2.0380 -1.1912 5 6 2.8164 3.3434 -1.1925 6 6 2.9494 4.0338 -0.0014 7 6 2.6279 3.4205 1.1933 8 6 2.1701 2.1092 1.1980 9 7 1.8435 1.4850 2.4070 10 6 2.5470 1.7653 3.5218 11 8 3.4094 2.6179 3.4963 12 6 2.2622 1.0197 4.8000 13 6 3.1923 1.5263 5.9041 14 6 2.9036 0.7688 7.2017 15 6 3.8341 1.2750 8.3056 16 6 3.5493 0.5293 9.5839 17 1 2.7817 -0.2300 9.6064 18 6 4.2688 0.8166 10.7245 19 7 5.2039 1.7409 10.6968 20 14 3.9162 -0.1083 12.3088 21 1 4.1454 -1.5600 12.0959 22 1 4.8192 0.3832 13.3802 23 1 2.5039 0.1163 12.7092 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 2.2581 1.5016 -2.1229 30 1 3.0692 3.8250 -2.1256 31 1 3.3050 5.0535 -0.0059 32 1 2.7316 3.9602 2.1230 33 1 1.1106 0.8505 2.4427 34 1 1.2258 1.1853 5.0941 35 1 2.4297 -0.0460 4.6440 36 1 4.2289 1.3611 5.6103 37 1 3.0244 2.5920 6.0601 38 1 1.8670 0.9339 7.4957 39 1 3.0718 -0.2967 7.0455 40 1 4.8706 1.1098 8.0114 41 1 3.6664 2.3407 8.4620 42 1 5.7097 1.9431 11.4994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588271968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = -45.540461 kcal Electronic energy + Delta-G solvation = -20184.993318 eV Core-core repulsion = 17128.544767 eV Total energy + Delta-G solvation = -3056.448551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78367 -38.79479 -35.19693 -34.91545 -34.03539 -32.65872 -30.52062 -29.76747 -28.90061 -25.74188 -24.15355 -23.42791 -22.03602 -21.05851 -20.21684 -20.00626 -17.81607 -16.92196 -16.19404 -16.11009 -15.86855 -15.21352 -14.67895 -14.42373 -14.18455 -13.96971 -13.83739 -13.70147 -13.33032 -12.64015 -12.44953 -12.33120 -12.08691 -11.88267 -11.70822 -11.62251 -11.27978 -11.19501 -10.98090 -10.55772 -10.54337 -10.43980 -10.42480 -9.80927 -9.62291 -9.24124 -9.00507 -8.90476 -8.30440 -8.23263 -5.95283 -3.97984 1.11290 1.25375 2.58693 2.96106 3.35214 3.39671 3.41815 3.64050 4.45677 4.48639 4.56986 4.68669 4.87838 4.94049 5.02132 5.13351 5.23775 5.25192 5.29355 5.36915 5.39996 5.45875 5.57145 5.64745 5.77574 5.84417 5.92827 6.09943 6.15323 6.26206 6.28138 6.36745 6.42867 6.52166 6.81159 6.91397 6.99146 7.18092 7.27232 7.73407 7.89327 8.05709 8.08844 8.47459 9.09529 9.65640 11.16038 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035597 B = 0.002676 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.385908 B =10461.258534 C =11099.372344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.113 4.113 4 C -0.103 4.103 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.120 4.120 8 C 0.152 3.848 9 N -0.680 5.680 10 C 0.511 3.489 11 O -0.514 6.514 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.409 0.591 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -1.349 -25.581 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.156 4.156 6 C -0.125 4.125 7 C -0.140 4.140 8 C 0.057 3.943 9 N -0.326 5.326 10 C 0.300 3.700 11 O -0.388 6.388 12 C -0.178 4.178 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.245 0.755 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.287 -0.678 -25.388 27.042 hybrid contribution -0.452 -0.764 0.886 1.254 sum -9.739 -1.442 -24.503 26.407 Atomic orbital electron populations 1.21778 0.94693 1.01915 1.02207 1.20489 0.96065 0.92560 1.03212 1.19683 1.03464 0.96193 0.92209 1.20805 0.99443 0.95091 0.96770 1.21096 1.01455 0.94978 0.98083 1.21072 0.99426 1.00010 0.92019 1.21363 1.00075 0.93074 0.99505 1.17648 0.99953 0.91743 0.84926 1.43761 1.35695 1.45663 1.07455 1.21349 0.80453 0.83202 0.85004 1.90706 1.31832 1.31733 1.84507 1.21826 1.03140 1.00765 0.92019 1.21473 0.98468 1.00775 0.93478 1.21649 1.00483 0.98505 0.94144 1.19090 0.94348 0.96466 0.91789 1.21244 1.19164 1.20562 0.95013 0.92804 1.25043 0.95200 0.95307 0.98996 1.69963 1.22895 1.31792 1.28819 0.86670 0.78109 0.80156 0.83113 1.20281 1.21310 1.20275 0.92307 0.92079 0.92835 0.90668 0.91045 0.85976 0.86164 0.85846 0.84172 0.75501 0.88791 0.88773 0.91685 0.91676 0.93417 0.93427 0.96587 0.96587 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.82 37.15 0.37 -0.52 16 2 C -0.09 -0.62 5.47 -27.89 -0.15 -0.78 16 3 C -0.11 -1.10 5.15 -104.43 -0.54 -1.64 16 4 C -0.10 -0.92 9.68 -39.61 -0.38 -1.30 16 5 C -0.14 -1.27 10.04 -39.55 -0.40 -1.67 16 6 C -0.11 -1.14 10.04 -39.61 -0.40 -1.54 16 7 C -0.12 -1.54 8.70 -39.40 -0.34 -1.88 16 8 C 0.15 1.79 6.29 -83.69 -0.53 1.26 16 9 N -0.68 -7.35 4.78 -9.86 -0.05 -7.40 16 10 C 0.51 7.03 7.67 -10.99 -0.08 6.95 16 11 O -0.51 -9.07 13.40 5.54 0.07 -9.00 16 12 C -0.14 -1.76 5.70 -27.89 -0.16 -1.92 16 13 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.32 7.32 -51.93 -0.38 -0.06 16 27 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 28 H 0.07 0.53 7.42 -51.93 -0.39 0.14 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.14 2.03 6.20 -52.49 -0.33 1.71 16 33 H 0.41 3.17 7.06 -40.82 -0.29 2.88 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -33.56 347.69 -9.27 -42.83 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.83 Total: -0.95 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.42 Total: -20.77 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.69 Total: -34.24 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.56 -9.27 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588271968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.714 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds