Wall clock time and date at job start Mon Mar 30 2020 01:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38114 * 120.03601 * 2 1 4 4 C 1.38284 * 120.07116 * 179.72753 * 3 2 1 5 5 C 1.38284 * 120.14069 * 0.27528 * 4 3 2 6 6 C 1.38114 * 120.07021 * 359.95469 * 5 4 3 7 7 C 1.50701 * 120.03403 * 180.02562 * 6 5 4 8 8 C 1.38870 * 119.92957 * 0.02562 * 6 5 4 9 9 N 1.39922 * 120.07054 * 180.02562 * 8 6 5 10 10 C 1.34780 * 120.00475 * 244.14153 * 9 8 6 11 11 O 1.21286 * 119.99482 * 4.76722 * 10 9 8 12 12 C 1.50690 * 120.00535 * 184.76962 * 10 9 8 13 13 C 1.53002 * 109.47379 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47144 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47140 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47098 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00185 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99622 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00183 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99552 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46779 * 120.00431 * 20 18 16 23 23 H 1.48500 * 109.47114 * 240.00134 * 20 18 16 24 24 H 1.08999 * 109.47601 * 96.72429 * 1 2 3 25 25 H 1.09003 * 109.46969 * 216.72143 * 1 2 3 26 26 H 1.09005 * 109.47591 * 336.71681 * 1 2 3 27 27 H 1.07994 * 119.96297 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.92743 * 180.24994 * 4 3 2 29 29 H 1.07995 * 119.96171 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47196 * 90.00279 * 7 6 5 31 31 H 1.08999 * 109.46941 * 210.00451 * 7 6 5 32 32 H 1.09004 * 109.47093 * 330.00080 * 7 6 5 33 33 H 0.97000 * 120.00089 * 64.13409 * 9 8 6 34 34 H 1.09000 * 109.47065 * 299.99967 * 12 10 9 35 35 H 1.09001 * 109.47333 * 59.99558 * 12 10 9 36 36 H 1.09006 * 109.46694 * 299.99256 * 13 12 10 37 37 H 1.08993 * 109.47163 * 59.99747 * 13 12 10 38 38 H 1.09000 * 109.47072 * 299.99710 * 14 13 12 39 39 H 1.09001 * 109.47560 * 59.99445 * 14 13 12 40 40 H 1.08997 * 109.46938 * 299.99552 * 15 14 13 41 41 H 1.08999 * 109.46533 * 60.00057 * 15 14 13 42 42 H 0.97001 * 119.99853 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1957 0.0000 4 6 3.5811 1.1965 0.0057 5 6 4.2762 0.0011 0.0057 6 6 3.5908 -1.1980 0.0009 7 6 4.3491 -2.5003 0.0014 8 6 2.2021 -1.2022 -0.0044 9 7 1.5047 -2.4153 -0.0087 10 6 0.7315 -2.7444 -1.0625 11 8 0.7075 -2.0313 -2.0432 12 6 -0.1033 -3.9983 -1.0221 13 6 -0.8795 -4.1368 -2.3333 14 6 -1.7275 -5.4096 -2.2920 15 6 -2.5043 -5.5477 -3.6029 16 6 -3.3391 -6.8017 -3.5625 17 1 -3.3181 -7.4365 -2.6889 18 6 -4.1305 -7.1380 -4.6403 19 7 -4.1564 -6.3648 -5.7037 20 14 -5.1658 -8.6921 -4.5898 21 1 -4.9607 -9.3816 -3.2907 22 1 -6.5999 -8.3365 -4.7401 23 1 -4.7604 -9.5932 -5.6984 24 1 -0.3634 -0.1203 -1.0206 25 1 -0.3633 -0.8238 0.6145 26 1 -0.3634 0.9440 0.4062 27 1 1.6582 2.1309 -0.0004 28 1 4.1193 2.1328 0.0098 29 1 5.3561 0.0051 0.0097 30 1 4.5280 -2.8161 1.0292 31 1 3.7648 -3.2611 -0.5161 32 1 5.3030 -2.3655 -0.5085 33 1 1.5778 -3.0194 0.7466 34 1 0.5468 -4.8636 -0.8921 35 1 -0.8038 -3.9418 -0.1889 36 1 -1.5297 -3.2716 -2.4636 37 1 -0.1787 -4.1935 -3.1661 38 1 -1.0778 -6.2749 -2.1613 39 1 -2.4284 -5.3524 -1.4591 40 1 -3.1541 -4.6823 -3.7331 41 1 -1.8037 -5.6047 -4.4360 42 1 -4.7129 -6.6017 -6.4621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588814920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:14 Heat of formation + Delta-G solvation = -45.144476 kcal Electronic energy + Delta-G solvation = -20438.014524 eV Core-core repulsion = 17381.583144 eV Total energy + Delta-G solvation = -3056.431380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74569 -38.74745 -35.09278 -34.67777 -33.73996 -32.63656 -31.05473 -29.63826 -27.37170 -26.82085 -25.55823 -22.97887 -21.55579 -21.09986 -20.19154 -19.98033 -17.68839 -16.85709 -16.26517 -16.15175 -15.46163 -15.26670 -14.49405 -14.25792 -14.09333 -13.85266 -13.67343 -13.29260 -13.15656 -12.91486 -12.62627 -12.26600 -12.09829 -11.78460 -11.69980 -11.62968 -11.43603 -11.36864 -10.99562 -10.54861 -10.48432 -10.42054 -9.96976 -9.73182 -9.60767 -9.23006 -8.97464 -8.74489 -8.54065 -8.30591 -5.95076 -3.97569 1.08816 1.18032 2.65994 3.07109 3.33262 3.40476 3.44373 3.52968 4.49105 4.56322 4.62553 4.76945 4.82664 5.05201 5.17223 5.25903 5.30630 5.32683 5.34741 5.38470 5.40519 5.55888 5.60571 5.63336 5.83266 5.87104 6.09205 6.12603 6.20783 6.25069 6.29018 6.38193 6.44798 6.53720 6.83096 6.90026 7.01221 7.19603 7.32870 7.74629 7.90229 8.06375 8.22802 8.48142 9.10420 9.66193 11.16300 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039153 B = 0.002761 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.968466 B =10137.409336 C =10443.401744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.089 4.089 7 C -0.114 4.114 8 C 0.139 3.861 9 N -0.689 5.689 10 C 0.513 3.487 11 O -0.516 6.516 12 C -0.138 4.138 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.406 0.594 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.727 12.702 16.514 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.170 4.170 8 C 0.047 3.953 9 N -0.339 5.339 10 C 0.302 3.698 11 O -0.390 6.390 12 C -0.178 4.178 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.574 13.195 15.606 26.313 hybrid contribution -0.503 -1.068 0.298 1.218 sum 16.071 12.127 15.904 25.657 Atomic orbital electron populations 1.20816 0.90846 1.02235 1.03396 1.20010 0.96462 0.92174 0.98493 1.20922 0.94204 0.97127 1.01455 1.21113 0.94206 0.97980 1.00201 1.20866 0.99639 0.91554 1.01830 1.19993 0.92459 0.96056 1.00554 1.20734 0.99858 0.94267 1.02166 1.17246 0.89726 0.85524 1.02834 1.43573 1.48590 1.19765 1.21965 1.21254 0.79031 0.87824 0.81710 1.90728 1.63898 1.52678 1.31664 1.21809 0.98936 0.94452 1.02559 1.21460 0.98511 0.99979 0.94178 1.21648 0.97582 0.94446 1.01086 1.19100 0.94656 0.96761 0.91240 1.21320 1.25176 1.07975 1.01316 0.92706 1.25044 0.97065 0.96882 0.95609 1.69984 1.40160 1.37707 1.05606 0.86561 0.80174 0.83462 0.77941 1.19781 1.21050 1.21046 0.89990 0.91781 0.91701 0.85838 0.85967 0.85893 0.91161 0.91365 0.91344 0.75713 0.89005 0.88916 0.91766 0.91762 0.93460 0.93456 0.96589 0.96596 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 8.58 36.00 0.31 -1.02 16 2 C -0.07 -0.83 5.59 -104.44 -0.58 -1.41 16 3 C -0.12 -1.22 9.67 -39.61 -0.38 -1.60 16 4 C -0.12 -1.08 10.04 -39.55 -0.40 -1.47 16 5 C -0.12 -1.13 9.70 -39.61 -0.38 -1.51 16 6 C -0.09 -0.93 5.90 -104.43 -0.62 -1.54 16 7 C -0.11 -0.93 9.77 36.01 0.35 -0.58 16 8 C 0.14 1.64 5.53 -83.69 -0.46 1.17 16 9 N -0.69 -7.35 3.63 -9.87 -0.04 -7.38 16 10 C 0.51 7.06 6.67 -10.99 -0.07 6.99 16 11 O -0.52 -9.35 14.38 5.55 0.08 -9.27 16 12 C -0.14 -1.77 5.70 -27.89 -0.16 -1.93 16 13 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.08 1.13 7.15 -51.93 -0.37 0.76 16 25 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 26 H 0.06 0.60 8.04 -51.93 -0.42 0.19 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.62 7.46 -51.93 -0.39 0.23 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.41 3.02 8.83 -40.82 -0.36 2.66 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -34.22 349.03 -9.15 -43.36 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.96 Total: -1.38 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -3.21 Total: -20.65 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.70 Total: -34.23 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.22 -9.15 -43.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588814920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.780 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds