Wall clock time and date at job start Mon Mar 30 2020 01:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38114 * 120.03601 * 2 1 4 4 C 1.38284 * 120.07116 * 179.72753 * 3 2 1 5 5 C 1.38284 * 120.14069 * 0.27528 * 4 3 2 6 6 C 1.38114 * 120.07021 * 359.95469 * 5 4 3 7 7 C 1.50701 * 120.03403 * 180.02562 * 6 5 4 8 8 C 1.38870 * 119.92957 * 0.02562 * 6 5 4 9 9 N 1.39922 * 120.07054 * 180.02562 * 8 6 5 10 10 C 1.34780 * 120.00475 * 244.14153 * 9 8 6 11 11 O 1.21286 * 119.99482 * 4.76722 * 10 9 8 12 12 C 1.50690 * 120.00535 * 184.76962 * 10 9 8 13 13 C 1.53002 * 109.47379 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47144 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47140 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47098 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00185 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99622 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00183 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99552 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46779 * 120.00431 * 20 18 16 23 23 H 1.48500 * 109.47114 * 240.00134 * 20 18 16 24 24 H 1.08999 * 109.47601 * 96.72429 * 1 2 3 25 25 H 1.09003 * 109.46969 * 216.72143 * 1 2 3 26 26 H 1.09005 * 109.47591 * 336.71681 * 1 2 3 27 27 H 1.07994 * 119.96297 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.92743 * 180.24994 * 4 3 2 29 29 H 1.07995 * 119.96171 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47196 * 90.00279 * 7 6 5 31 31 H 1.08999 * 109.46941 * 210.00451 * 7 6 5 32 32 H 1.09004 * 109.47093 * 330.00080 * 7 6 5 33 33 H 0.97000 * 120.00089 * 64.13409 * 9 8 6 34 34 H 1.09000 * 109.47065 * 299.99967 * 12 10 9 35 35 H 1.09001 * 109.47333 * 59.99558 * 12 10 9 36 36 H 1.09006 * 109.46694 * 299.99256 * 13 12 10 37 37 H 1.08993 * 109.47163 * 59.99747 * 13 12 10 38 38 H 1.09000 * 109.47072 * 299.99710 * 14 13 12 39 39 H 1.09001 * 109.47560 * 59.99445 * 14 13 12 40 40 H 1.08997 * 109.46938 * 299.99552 * 15 14 13 41 41 H 1.08999 * 109.46533 * 60.00057 * 15 14 13 42 42 H 0.97001 * 119.99853 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1957 0.0000 4 6 3.5811 1.1965 0.0057 5 6 4.2762 0.0011 0.0057 6 6 3.5908 -1.1980 0.0009 7 6 4.3491 -2.5003 0.0014 8 6 2.2021 -1.2022 -0.0044 9 7 1.5047 -2.4153 -0.0087 10 6 0.7315 -2.7444 -1.0625 11 8 0.7075 -2.0313 -2.0432 12 6 -0.1033 -3.9983 -1.0221 13 6 -0.8795 -4.1368 -2.3333 14 6 -1.7275 -5.4096 -2.2920 15 6 -2.5043 -5.5477 -3.6029 16 6 -3.3391 -6.8017 -3.5625 17 1 -3.3181 -7.4365 -2.6889 18 6 -4.1305 -7.1380 -4.6403 19 7 -4.1564 -6.3648 -5.7037 20 14 -5.1658 -8.6921 -4.5898 21 1 -4.9607 -9.3816 -3.2907 22 1 -6.5999 -8.3365 -4.7401 23 1 -4.7604 -9.5932 -5.6984 24 1 -0.3634 -0.1203 -1.0206 25 1 -0.3633 -0.8238 0.6145 26 1 -0.3634 0.9440 0.4062 27 1 1.6582 2.1309 -0.0004 28 1 4.1193 2.1328 0.0098 29 1 5.3561 0.0051 0.0097 30 1 4.5280 -2.8161 1.0292 31 1 3.7648 -3.2611 -0.5161 32 1 5.3030 -2.3655 -0.5085 33 1 1.5778 -3.0194 0.7466 34 1 0.5468 -4.8636 -0.8921 35 1 -0.8038 -3.9418 -0.1889 36 1 -1.5297 -3.2716 -2.4636 37 1 -0.1787 -4.1935 -3.1661 38 1 -1.0778 -6.2749 -2.1613 39 1 -2.4284 -5.3524 -1.4591 40 1 -3.1541 -4.6823 -3.7331 41 1 -1.8037 -5.6047 -4.4360 42 1 -4.7129 -6.6017 -6.4621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588814920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:13 Heat of formation + Delta-G solvation = -64.660200 kcal Electronic energy + Delta-G solvation = -20438.860789 eV Core-core repulsion = 17381.583144 eV Total energy + Delta-G solvation = -3057.277645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66312 -39.70220 -36.67936 -35.75230 -34.62715 -34.48893 -32.11082 -31.12525 -28.39696 -27.55370 -27.19054 -24.52005 -22.73071 -21.91544 -21.67881 -21.15188 -18.60218 -18.37469 -17.88678 -17.22141 -16.51556 -16.42833 -16.19121 -15.29655 -15.24767 -14.87374 -14.63829 -14.52962 -14.11057 -13.87922 -13.74991 -13.62004 -13.58284 -13.29352 -12.86109 -12.84271 -12.52726 -12.32231 -12.20048 -12.17635 -12.15273 -12.11436 -11.38230 -11.36336 -11.16705 -10.91880 -10.61963 -10.55853 -9.50897 -9.36284 -8.18875 -6.30984 0.30162 0.40962 1.40449 1.41344 1.54838 1.61227 2.15770 2.41987 2.77084 3.14021 3.76875 3.84645 3.90250 4.03843 4.08552 4.14126 4.37532 4.43888 4.52728 4.59185 4.66177 4.68676 4.69612 4.78586 4.83095 4.85570 4.87945 4.91034 5.12796 5.18606 5.29591 5.33190 5.37092 5.45362 5.50549 5.57017 5.61256 5.65167 5.78292 5.88338 6.11754 6.25356 6.46007 6.87916 7.25402 7.38799 8.93639 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039153 B = 0.002761 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.968466 B =10137.409336 C =10443.401744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.125 4.125 6 C -0.099 4.099 7 C -0.111 4.111 8 C 0.113 3.887 9 N -0.668 5.668 10 C 0.515 3.485 11 O -0.569 6.569 12 C -0.126 4.126 13 C -0.095 4.095 14 C -0.095 4.095 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.423 0.577 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.061 0.939 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.859 11.781 18.919 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.135 4.135 5 C -0.143 4.143 6 C -0.101 4.101 7 C -0.168 4.168 8 C 0.021 3.979 9 N -0.319 5.319 10 C 0.305 3.695 11 O -0.446 6.446 12 C -0.166 4.166 13 C -0.133 4.133 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.180 1.180 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.156 0.844 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.263 0.737 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.731 12.263 18.073 28.132 hybrid contribution -0.793 -0.693 -0.460 1.149 sum 16.939 11.569 17.613 27.037 Atomic orbital electron populations 1.20740 0.91163 1.03279 1.01586 1.20227 0.96615 0.93106 0.99674 1.21205 0.95067 0.97245 1.01349 1.21484 0.93918 0.99244 0.98855 1.21244 1.01008 0.91211 1.00883 1.20316 0.92118 0.97539 1.00109 1.20768 0.99722 0.92858 1.03443 1.17501 0.90583 0.85610 1.04222 1.43299 1.47268 1.19770 1.21531 1.21341 0.79057 0.87511 0.81593 1.90717 1.65772 1.54300 1.33824 1.21684 0.99373 0.95215 1.00314 1.21239 0.97851 0.97723 0.96522 1.21443 0.97692 0.96302 0.97830 1.19059 0.94058 0.95103 0.93645 1.21787 1.25480 1.08712 1.01824 0.91536 1.26096 0.98535 1.00740 0.95083 1.70138 1.41235 1.39999 1.06530 0.85336 0.77982 0.78673 0.78660 1.18040 1.20495 1.20485 0.93035 0.91575 0.89998 0.84412 0.83323 0.83424 0.89109 0.92438 0.90411 0.73711 0.86030 0.86064 0.93852 0.93932 0.91993 0.91993 0.99751 0.99785 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.58 71.23 0.61 -1.97 16 2 C -0.09 -2.23 5.59 -19.74 -0.11 -2.34 16 3 C -0.13 -2.56 9.67 22.25 0.22 -2.35 16 4 C -0.12 -1.93 10.04 22.29 0.22 -1.71 16 5 C -0.13 -2.08 9.70 22.25 0.22 -1.86 16 6 C -0.10 -1.92 5.90 -19.74 -0.12 -2.03 16 7 C -0.11 -1.60 9.77 71.24 0.70 -0.90 16 8 C 0.11 2.58 5.53 38.15 0.21 2.79 16 9 N -0.67 -13.52 3.63 -303.51 -1.10 -14.62 16 10 C 0.52 14.03 6.67 87.65 0.58 14.62 16 11 O -0.57 -21.39 14.38 -3.05 -0.04 -21.43 16 12 C -0.13 -3.04 5.70 29.85 0.17 -2.87 16 13 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 14 C -0.10 -3.86 5.15 30.59 0.16 -3.70 16 15 C 0.02 1.02 4.97 29.85 0.15 1.17 16 16 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 18 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 19 N -0.94 -59.35 13.29 21.45 0.28 -59.06 16 20 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H 0.05 1.51 7.15 -2.39 -0.02 1.49 16 25 H 0.07 1.43 7.55 -2.39 -0.02 1.41 16 26 H 0.08 1.52 8.04 -2.38 -0.02 1.50 16 27 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 29 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.95 7.46 -2.39 -0.02 0.93 16 32 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 33 H 0.42 5.38 8.83 -92.71 -0.82 4.57 16 34 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.04 1.71 8.10 -2.38 -0.02 1.69 16 37 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.29 349.03 5.18 -72.11 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.17 Total: 11.64 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 3.84 Total: -35.58 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -0.82 Total: -73.69 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.43 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -77.29 5.18 -72.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588814920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.451 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds