Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47630 * 2 1 4 4 C 1.53001 * 109.46964 * 64.99436 * 3 2 1 5 5 C 1.52997 * 109.47422 * 185.61246 * 4 3 2 6 6 C 1.52999 * 109.47672 * 184.99756 * 3 2 1 7 7 C 1.50699 * 109.46837 * 66.39068 * 6 3 2 8 8 O 1.21280 * 120.00344 * 6.02775 * 7 6 3 9 9 N 1.34779 * 119.99727 * 186.02802 * 7 6 3 10 10 C 1.39123 * 119.99783 * 184.91077 * 9 7 6 11 11 C 1.38647 * 120.28580 * 326.05003 * 10 9 7 12 12 C 1.38227 * 120.03275 * 180.25800 * 11 10 9 13 13 C 1.38871 * 120.61483 * 359.74266 * 12 11 10 14 14 C 1.36458 * 120.57714 * 359.97438 * 13 12 11 15 15 C 1.40735 * 119.94638 * 0.02562 * 14 13 12 16 16 C 1.41075 * 120.30713 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00456 * 154.60559 * 16 15 14 18 18 C 1.39963 * 119.99598 * 334.60328 * 16 15 14 19 19 N 1.30854 * 119.99697 * 334.58750 * 18 16 15 20 20 Si 1.86790 * 120.00081 * 154.58409 * 18 16 15 21 21 H 1.48504 * 109.47318 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47312 * 299.99861 * 20 18 16 23 23 H 1.48497 * 109.47308 * 59.99979 * 20 18 16 24 24 H 1.08998 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47187 * 300.00084 * 1 2 3 26 26 H 1.09005 * 109.46825 * 60.00327 * 1 2 3 27 27 H 1.08999 * 109.47650 * 239.99383 * 2 1 3 28 28 H 1.09011 * 109.46735 * 120.00121 * 2 1 3 29 29 H 1.09004 * 109.47207 * 305.00155 * 3 2 1 30 30 H 1.08997 * 109.47768 * 305.61650 * 4 3 2 31 31 H 1.09007 * 109.47025 * 65.61393 * 4 3 2 32 32 H 1.09007 * 109.47026 * 64.61501 * 5 4 3 33 33 H 1.08999 * 109.47828 * 184.61489 * 5 4 3 34 34 H 1.09007 * 109.47449 * 304.61888 * 5 4 3 35 35 H 1.09005 * 109.46902 * 306.38977 * 6 3 2 36 36 H 1.08995 * 109.47004 * 186.39172 * 6 3 2 37 37 H 0.96999 * 119.99657 * 4.91463 * 9 7 6 38 38 H 1.07999 * 119.98280 * 359.97300 * 11 10 9 39 39 H 1.08006 * 119.69255 * 179.75853 * 12 11 10 40 40 H 1.07992 * 119.70753 * 180.02562 * 13 12 11 41 41 H 1.08000 * 120.02977 * 180.02562 * 14 13 12 42 42 H 0.97001 * 120.00469 * 354.07796 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.0217 3.6057 1.2499 6 6 3.5649 1.4442 -0.1257 7 6 3.9579 0.9139 -1.4804 8 8 3.1047 0.6714 -2.3076 9 7 5.2575 0.7089 -1.7727 10 6 5.6286 0.3172 -3.0551 11 6 4.8012 -0.5083 -3.8010 12 6 5.1776 -0.8986 -5.0724 13 6 6.3796 -0.4672 -5.6179 14 6 7.2103 0.3503 -4.9081 15 6 6.8508 0.7624 -3.6114 16 6 7.7041 1.6070 -2.8706 17 1 7.2972 2.2424 -2.0979 18 6 9.0780 1.6213 -3.1370 19 7 9.6524 0.5724 -3.6681 20 14 10.0916 3.1378 -2.7346 21 1 11.5088 2.8998 -3.1093 22 1 9.5666 4.3003 -3.4950 23 1 10.0056 3.4188 -1.2790 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6055 1.9815 -0.8418 30 1 0.5577 2.0376 1.4455 31 1 2.1491 1.6489 2.1416 32 1 1.4463 4.1015 0.4679 33 1 1.8085 4.0747 2.2105 34 1 3.0856 3.6951 1.0301 35 1 3.9942 0.8112 0.6510 36 1 3.9376 2.4622 -0.0119 37 1 5.9340 0.8345 -1.0890 38 1 3.8643 -0.8502 -3.3865 39 1 4.5306 -1.5449 -5.6471 40 1 6.6590 -0.7808 -6.6128 41 1 8.1429 0.6808 -5.3411 42 1 9.1457 -0.2445 -3.7979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588986973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -53.036664 kcal Electronic energy + Delta-G solvation = -21328.809618 eV Core-core repulsion = 18272.036007 eV Total energy + Delta-G solvation = -3056.773611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.79969 -37.82439 -36.47763 -33.92721 -33.73787 -31.74281 -30.15862 -29.33383 -28.16105 -25.32566 -24.71749 -22.62709 -21.72383 -20.95035 -19.78501 -19.28481 -18.00162 -16.81629 -16.08169 -15.12662 -14.91082 -14.58469 -14.57176 -14.17681 -14.01023 -13.60959 -13.36987 -13.00979 -12.68838 -12.46200 -12.20205 -12.02130 -11.91519 -11.83272 -11.50846 -11.29980 -11.13507 -11.00003 -10.69338 -10.49289 -10.45202 -10.37888 -10.33955 -10.25021 -9.66469 -9.26877 -9.00653 -8.78299 -7.61017 -7.38080 -6.94019 -4.47167 2.59434 2.80660 3.11206 3.22803 3.31885 3.39459 3.94766 3.97425 4.54386 4.78141 4.81466 4.97059 5.21669 5.35200 5.38181 5.47218 5.49667 5.54659 5.59548 5.78362 5.82651 5.86142 5.92371 6.02776 6.13883 6.19896 6.21483 6.31753 6.35390 6.49338 6.53451 6.54952 6.85927 6.97065 7.17333 7.40013 7.54750 7.73149 7.78850 7.93162 8.03711 8.24339 8.38843 8.70034 8.79207 9.02404 9.99921 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.005068 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.012141 B = 5523.542992 C = 6846.654416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.071 4.071 4 C -0.121 4.121 5 C -0.157 4.157 6 C -0.138 4.138 7 C 0.497 3.503 8 O -0.539 6.539 9 N -0.640 5.640 10 C 0.008 3.992 11 C -0.075 4.075 12 C -0.241 4.241 13 C -0.093 4.093 14 C -0.208 4.208 15 C 0.090 3.910 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.795 5.795 20 Si 1.063 2.937 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.276 1.276 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.401 0.599 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 2.498 9.647 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.089 4.089 4 C -0.158 4.158 5 C -0.214 4.214 6 C -0.178 4.178 7 C 0.284 3.716 8 O -0.418 6.418 9 N -0.282 5.282 10 C -0.086 4.086 11 C -0.095 4.095 12 C -0.261 4.261 13 C -0.112 4.112 14 C -0.228 4.228 15 C 0.086 3.914 16 C -0.555 4.555 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.418 5.418 20 Si 0.887 3.113 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.202 1.202 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.236 0.764 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.910 2.944 8.963 12.311 hybrid contribution -1.132 -0.570 0.352 1.315 sum -9.042 2.374 9.315 13.197 Atomic orbital electron populations 1.21772 0.96262 1.01101 1.01439 1.21625 0.95695 0.96331 1.02400 1.20946 0.93197 0.96817 0.97983 1.21643 1.01284 0.95521 0.97386 1.21864 1.01884 0.96318 1.01325 1.21795 0.97913 1.02829 0.95306 1.20651 0.82695 0.78604 0.89629 1.90612 1.49648 1.51648 1.49852 1.42925 1.07439 1.65894 1.11909 1.17638 1.00022 1.04749 0.86167 1.20732 0.98329 0.95767 0.94647 1.20271 0.98936 1.09389 0.97469 1.20390 0.94656 0.98217 0.97953 1.20738 1.01710 1.05402 0.94947 1.17494 0.91580 0.90891 0.91471 1.20312 0.94077 1.21863 1.19281 0.90829 1.26955 0.96608 1.02217 0.92318 1.70459 1.41321 1.02629 1.27407 0.83657 0.76148 0.74153 0.77346 1.19855 1.20053 1.20193 0.93245 0.93034 0.92738 0.90409 0.92846 0.90187 0.91608 0.92155 0.92751 0.93032 0.92360 0.89599 0.88853 0.76361 0.86998 0.89095 0.89256 0.87446 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.68 37.16 0.36 -1.30 16 2 C -0.12 -1.58 5.21 -26.74 -0.14 -1.72 16 3 C -0.07 -0.89 1.49 -90.62 -0.13 -1.02 16 4 C -0.12 -1.20 5.27 -26.73 -0.14 -1.34 16 5 C -0.16 -1.50 9.78 37.16 0.36 -1.13 16 6 C -0.14 -1.86 5.06 -27.88 -0.14 -2.00 16 7 C 0.50 9.26 7.24 -10.99 -0.08 9.18 16 8 O -0.54 -11.66 11.68 5.56 0.06 -11.59 16 9 N -0.64 -13.02 4.91 -9.47 -0.05 -13.07 16 10 C 0.01 0.19 6.35 -83.17 -0.53 -0.34 16 11 C -0.07 -1.80 8.70 -39.43 -0.34 -2.15 16 12 C -0.24 -5.64 10.04 -39.35 -0.39 -6.03 16 13 C -0.09 -2.21 9.97 -39.99 -0.40 -2.60 16 14 C -0.21 -5.30 7.89 -39.28 -0.31 -5.61 16 15 C 0.09 2.31 5.31 -106.65 -0.57 1.75 16 16 C -0.53 -13.19 8.34 -37.86 -0.32 -13.50 16 17 H 0.07 1.76 7.38 -52.49 -0.39 1.37 16 18 C 0.04 1.00 4.94 -17.32 -0.09 0.92 16 19 N -0.80 -20.38 12.31 55.55 0.68 -19.70 16 20 Si 1.06 20.74 30.00 -169.99 -5.10 15.64 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.49 6.45 -51.93 -0.33 0.16 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.23 6.22 -51.93 -0.32 0.91 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 1.16 7.81 -51.93 -0.41 0.76 16 30 H 0.07 0.61 6.32 -51.93 -0.33 0.29 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.57 6.27 -51.93 -0.33 0.24 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.15 6.23 -51.93 -0.32 0.83 16 37 H 0.40 7.38 7.93 -40.82 -0.32 7.06 16 38 H 0.11 2.67 6.13 -52.49 -0.32 2.35 16 39 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.11 2.80 6.48 -52.49 -0.34 2.46 16 42 H 0.30 7.93 6.69 -40.82 -0.27 7.65 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -28.23 332.51 -8.53 -36.76 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.29 Total: 13.86 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -2.86 Total: -26.92 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.64 Total: -32.77 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.06 Total: -11.59 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.10 Total: 15.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.23 -8.53 -36.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588986973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.278 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds