Wall clock time and date at job start Mon Mar 30 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47630 * 2 1 4 4 C 1.53001 * 109.46964 * 64.99436 * 3 2 1 5 5 C 1.52997 * 109.47422 * 185.61246 * 4 3 2 6 6 C 1.52999 * 109.47672 * 184.99756 * 3 2 1 7 7 C 1.50699 * 109.46837 * 66.39068 * 6 3 2 8 8 O 1.21280 * 120.00344 * 6.02775 * 7 6 3 9 9 N 1.34779 * 119.99727 * 186.02802 * 7 6 3 10 10 C 1.39123 * 119.99783 * 184.91077 * 9 7 6 11 11 C 1.38647 * 120.28580 * 326.05003 * 10 9 7 12 12 C 1.38227 * 120.03275 * 180.25800 * 11 10 9 13 13 C 1.38871 * 120.61483 * 359.74266 * 12 11 10 14 14 C 1.36458 * 120.57714 * 359.97438 * 13 12 11 15 15 C 1.40735 * 119.94638 * 0.02562 * 14 13 12 16 16 C 1.41075 * 120.30713 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00456 * 154.60559 * 16 15 14 18 18 C 1.39963 * 119.99598 * 334.60328 * 16 15 14 19 19 N 1.30854 * 119.99697 * 334.58750 * 18 16 15 20 20 Si 1.86790 * 120.00081 * 154.58409 * 18 16 15 21 21 H 1.48504 * 109.47318 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47312 * 299.99861 * 20 18 16 23 23 H 1.48497 * 109.47308 * 59.99979 * 20 18 16 24 24 H 1.08998 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47187 * 300.00084 * 1 2 3 26 26 H 1.09005 * 109.46825 * 60.00327 * 1 2 3 27 27 H 1.08999 * 109.47650 * 239.99383 * 2 1 3 28 28 H 1.09011 * 109.46735 * 120.00121 * 2 1 3 29 29 H 1.09004 * 109.47207 * 305.00155 * 3 2 1 30 30 H 1.08997 * 109.47768 * 305.61650 * 4 3 2 31 31 H 1.09007 * 109.47025 * 65.61393 * 4 3 2 32 32 H 1.09007 * 109.47026 * 64.61501 * 5 4 3 33 33 H 1.08999 * 109.47828 * 184.61489 * 5 4 3 34 34 H 1.09007 * 109.47449 * 304.61888 * 5 4 3 35 35 H 1.09005 * 109.46902 * 306.38977 * 6 3 2 36 36 H 1.08995 * 109.47004 * 186.39172 * 6 3 2 37 37 H 0.96999 * 119.99657 * 4.91463 * 9 7 6 38 38 H 1.07999 * 119.98280 * 359.97300 * 11 10 9 39 39 H 1.08006 * 119.69255 * 179.75853 * 12 11 10 40 40 H 1.07992 * 119.70753 * 180.02562 * 13 12 11 41 41 H 1.08000 * 120.02977 * 180.02562 * 14 13 12 42 42 H 0.97001 * 120.00469 * 354.07796 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.0217 3.6057 1.2499 6 6 3.5649 1.4442 -0.1257 7 6 3.9579 0.9139 -1.4804 8 8 3.1047 0.6714 -2.3076 9 7 5.2575 0.7089 -1.7727 10 6 5.6286 0.3172 -3.0551 11 6 4.8012 -0.5083 -3.8010 12 6 5.1776 -0.8986 -5.0724 13 6 6.3796 -0.4672 -5.6179 14 6 7.2103 0.3503 -4.9081 15 6 6.8508 0.7624 -3.6114 16 6 7.7041 1.6070 -2.8706 17 1 7.2972 2.2424 -2.0979 18 6 9.0780 1.6213 -3.1370 19 7 9.6524 0.5724 -3.6681 20 14 10.0916 3.1378 -2.7346 21 1 11.5088 2.8998 -3.1093 22 1 9.5666 4.3003 -3.4950 23 1 10.0056 3.4188 -1.2790 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6055 1.9815 -0.8418 30 1 0.5577 2.0376 1.4455 31 1 2.1491 1.6489 2.1416 32 1 1.4463 4.1015 0.4679 33 1 1.8085 4.0747 2.2105 34 1 3.0856 3.6951 1.0301 35 1 3.9942 0.8112 0.6510 36 1 3.9376 2.4622 -0.0119 37 1 5.9340 0.8345 -1.0890 38 1 3.8643 -0.8502 -3.3865 39 1 4.5306 -1.5449 -5.6471 40 1 6.6590 -0.7808 -6.6128 41 1 8.1429 0.6808 -5.3411 42 1 9.1457 -0.2445 -3.7979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588986973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:23 Heat of formation + Delta-G solvation = -66.862793 kcal Electronic energy + Delta-G solvation = -21329.409164 eV Core-core repulsion = 18272.036007 eV Total energy + Delta-G solvation = -3057.373157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36193 -39.45540 -37.71107 -35.77319 -35.45061 -32.62065 -31.47998 -31.22080 -29.72963 -27.03213 -25.95228 -23.57273 -23.35804 -22.74028 -21.21046 -20.54789 -19.83792 -18.35845 -17.74018 -16.66104 -16.48183 -16.04992 -15.76390 -15.53506 -15.26901 -14.93165 -14.65478 -14.42690 -14.19309 -14.00577 -13.86748 -13.46848 -13.21575 -12.87857 -12.71462 -12.67183 -12.45347 -12.27107 -12.14158 -12.00455 -11.95713 -11.50130 -11.41806 -11.32512 -11.27423 -11.00015 -10.76717 -10.44509 -9.54963 -9.29296 -8.79402 -6.40749 0.77906 0.91602 1.53642 1.65623 1.81531 1.82754 2.34162 2.47244 2.70081 3.54385 3.74575 3.85965 3.94258 4.20866 4.38836 4.39530 4.42917 4.47468 4.54390 4.62517 4.65931 4.68518 4.82399 4.94528 4.96097 4.98740 5.08673 5.12221 5.14993 5.28071 5.29595 5.32760 5.48552 5.49631 5.55155 5.58748 5.69496 5.78235 5.94232 6.04146 6.13732 6.35813 6.65874 6.90342 6.92445 7.43246 8.05681 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.005068 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.012141 B = 5523.542992 C = 6846.654416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.067 4.067 4 C -0.113 4.113 5 C -0.158 4.158 6 C -0.129 4.129 7 C 0.494 3.506 8 O -0.571 6.571 9 N -0.642 5.642 10 C 0.004 3.996 11 C -0.091 4.091 12 C -0.242 4.242 13 C -0.098 4.098 14 C -0.228 4.228 15 C 0.062 3.938 16 C -0.544 4.544 17 H 0.081 0.919 18 C 0.008 3.992 19 N -0.815 5.815 20 Si 1.114 2.886 21 H -0.276 1.276 22 H -0.270 1.270 23 H -0.251 1.251 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.410 0.590 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 3.527 11.754 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.086 4.086 4 C -0.150 4.150 5 C -0.215 4.215 6 C -0.168 4.168 7 C 0.283 3.717 8 O -0.451 6.451 9 N -0.285 5.285 10 C -0.090 4.090 11 C -0.111 4.111 12 C -0.262 4.262 13 C -0.117 4.117 14 C -0.248 4.248 15 C 0.058 3.942 16 C -0.572 4.572 17 H 0.099 0.901 18 C -0.209 4.209 19 N -0.438 5.438 20 Si 0.932 3.068 21 H -0.200 1.200 22 H -0.195 1.195 23 H -0.175 1.175 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.247 0.753 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.436 3.964 11.095 14.490 hybrid contribution -1.090 -0.957 -0.337 1.489 sum -9.526 3.008 10.758 14.680 Atomic orbital electron populations 1.21750 0.95059 1.01624 1.01834 1.21596 0.96847 0.96287 1.01319 1.20925 0.92256 0.96653 0.98794 1.21591 1.02054 0.95485 0.95890 1.21879 1.01570 0.96074 1.02004 1.21867 0.98776 1.03857 0.92306 1.21618 0.81484 0.77324 0.91229 1.90596 1.50313 1.52717 1.51462 1.43011 1.08538 1.66200 1.10778 1.17842 0.99459 1.04011 0.87714 1.20905 0.98509 0.96370 0.95361 1.20601 0.99057 1.09088 0.97424 1.20642 0.94414 0.97675 0.98985 1.20774 1.01780 1.06715 0.95494 1.17830 0.92623 0.91713 0.92017 1.20514 0.94628 1.22220 1.19886 0.90104 1.28334 0.97641 1.03897 0.91047 1.70570 1.41196 1.02761 1.29267 0.83027 0.74420 0.70733 0.78646 1.20034 1.19527 1.17497 0.92724 0.90885 0.94047 0.94082 0.91214 0.92710 0.90673 0.90583 0.93514 0.91407 0.92605 0.86915 0.87137 0.75343 0.87071 0.86702 0.86757 0.88791 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.68 71.98 0.70 -2.35 16 2 C -0.12 -3.01 5.21 30.59 0.16 -2.85 16 3 C -0.07 -1.58 1.49 -10.80 -0.02 -1.60 16 4 C -0.11 -1.89 5.27 30.59 0.16 -1.73 16 5 C -0.16 -2.58 9.78 71.98 0.70 -1.87 16 6 C -0.13 -3.21 5.06 29.85 0.15 -3.06 16 7 C 0.49 18.24 7.24 87.66 0.63 18.87 16 8 O -0.57 -25.07 11.68 -3.03 -0.04 -25.11 16 9 N -0.64 -26.10 4.91 -302.28 -1.49 -27.58 16 10 C 0.00 0.22 6.35 38.88 0.25 0.46 16 11 C -0.09 -4.46 8.70 22.36 0.19 -4.27 16 12 C -0.24 -11.32 10.04 22.42 0.23 -11.09 16 13 C -0.10 -4.68 9.97 22.01 0.22 -4.46 16 14 C -0.23 -11.88 7.89 22.46 0.18 -11.70 16 15 C 0.06 3.27 5.31 -21.18 -0.11 3.16 16 16 C -0.54 -27.41 8.34 23.38 0.19 -27.21 16 17 H 0.08 3.83 7.38 -2.91 -0.02 3.81 16 18 C 0.01 0.38 4.94 85.26 0.42 0.80 16 19 N -0.81 -42.51 12.31 21.83 0.27 -42.24 16 20 Si 1.11 40.93 30.00 68.60 2.06 42.98 16 21 H -0.28 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.21 6.45 -2.39 -0.02 1.19 16 26 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.04 1.31 6.22 -2.39 -0.01 1.29 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.05 1.57 7.81 -2.38 -0.02 1.55 16 30 H 0.07 1.15 6.32 -2.39 -0.02 1.13 16 31 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.93 6.27 -2.38 -0.01 0.92 16 35 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.11 2.44 6.23 -2.39 -0.01 2.43 16 37 H 0.41 14.88 7.93 -92.71 -0.74 14.14 16 38 H 0.11 5.41 6.13 -2.91 -0.02 5.39 16 39 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 40 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.09 5.07 6.48 -2.91 -0.02 5.05 16 42 H 0.28 15.55 6.69 -92.71 -0.62 14.93 16 Total: -1.00 -62.33 332.51 5.29 -57.04 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: 0.43 Total: 43.81 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 4.06 Total: -48.91 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.22 Total: -69.82 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.04 Total: -25.11 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.06 Total: 42.98 kcal Total: -62.33 5.29 -57.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588986973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.823 kcal (2) G-P(sol) polarization free energy of solvation -62.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds