Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00241 * 2 1 4 4 O 1.21278 * 120.00371 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.99788 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.50694 * 109.47075 * 179.97438 * 6 5 3 8 8 H 1.07995 * 120.00122 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99962 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99534 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99922 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47151 * 60.00229 * 11 9 7 13 13 H 1.48500 * 109.47022 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47435 * 300.00252 * 11 9 7 15 15 C 1.46499 * 120.00415 * 180.02562 * 2 1 3 16 16 C 1.53006 * 109.47438 * 237.86121 * 15 2 1 17 17 C 1.52998 * 109.47302 * 117.85892 * 15 2 1 18 18 C 1.50708 * 109.46754 * 357.86141 * 15 2 1 19 19 C 1.38238 * 119.99673 * 277.23294 * 18 15 2 20 20 C 1.38230 * 119.99693 * 179.97438 * 19 18 15 21 21 C 1.38238 * 120.00399 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99428 * 0.27832 * 21 20 19 23 23 C 1.38224 * 120.00106 * 97.21582 * 18 15 2 24 24 H 1.09002 * 109.46586 * 264.81081 * 1 2 3 25 25 H 1.08994 * 109.46921 * 24.80973 * 1 2 3 26 26 H 1.08997 * 109.46881 * 144.81557 * 1 2 3 27 27 H 1.09004 * 109.46825 * 299.99986 * 5 3 2 28 28 H 1.08995 * 109.47274 * 59.99551 * 5 3 2 29 29 H 1.08999 * 109.46506 * 299.99690 * 6 5 3 30 30 H 1.08994 * 109.47020 * 59.99522 * 6 5 3 31 31 H 0.96999 * 119.99291 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.47121 * 179.97438 * 16 15 2 33 33 H 1.08991 * 109.46906 * 299.99767 * 16 15 2 34 34 H 1.09006 * 109.46694 * 59.99619 * 16 15 2 35 35 H 1.08999 * 109.47426 * 299.99911 * 17 15 2 36 36 H 1.09001 * 109.47370 * 60.00685 * 17 15 2 37 37 H 1.09001 * 109.47152 * 180.02562 * 17 15 2 38 38 H 1.07998 * 119.99795 * 359.97438 * 19 18 15 39 39 H 1.08008 * 120.00015 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.00151 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.99420 * 179.72762 * 22 21 20 42 42 H 1.08007 * 120.00340 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6353 -0.0002 7 6 1.6261 4.9403 -0.0002 8 1 0.5461 4.9403 0.0006 9 6 2.3155 6.1344 -0.0004 10 7 3.6306 6.1344 0.0001 11 14 1.3814 7.7521 -0.0011 12 1 0.5273 7.8311 1.2111 13 1 2.3464 8.8808 -0.0005 14 1 0.5280 7.8304 -1.2139 15 6 2.1976 -1.2687 -0.0006 16 6 3.1172 -1.3272 1.2209 17 6 3.0363 -1.3727 -1.2759 18 6 1.2191 -2.4137 0.0519 19 6 0.6942 -2.8192 1.2648 20 6 -0.2037 -3.8691 1.3129 21 6 -0.5771 -4.5132 0.1482 22 6 -0.0482 -4.1110 -1.0640 23 6 0.8462 -3.0582 -1.1126 24 1 -0.3632 -0.0930 1.0235 25 1 -0.3633 0.9328 -0.4312 26 1 -0.3633 -0.8399 -0.5921 27 1 0.7584 2.5302 -0.8892 28 1 0.7590 2.5299 0.8907 29 1 3.0068 3.5775 0.8894 30 1 3.0056 3.5775 -0.8906 31 1 4.1155 6.9744 -0.0004 32 1 3.6619 -2.2714 1.2207 33 1 3.8248 -0.4991 1.1829 34 1 2.5195 -1.2531 2.1295 35 1 2.3813 -1.3311 -2.1461 36 1 3.7441 -0.5446 -1.3139 37 1 3.5811 -2.3169 -1.2765 38 1 0.9857 -2.3157 2.1747 39 1 -0.6141 -4.1857 2.2605 40 1 -1.2783 -5.3337 0.1859 41 1 -0.3366 -4.6171 -1.9735 42 1 1.2564 -2.7415 -2.0603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589797776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = -13.910855 kcal Electronic energy + Delta-G solvation = -21489.607775 eV Core-core repulsion = 18434.530786 eV Total energy + Delta-G solvation = -3055.076989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58276 -38.83772 -35.96346 -33.65123 -32.95401 -31.26432 -30.71853 -29.83884 -27.28816 -26.23821 -25.56057 -23.58470 -22.36068 -21.86767 -19.97297 -18.13801 -17.29181 -16.64741 -16.14938 -15.56065 -15.43917 -14.96049 -14.70283 -14.41919 -13.79854 -13.70908 -13.33363 -13.21858 -12.90153 -12.54617 -12.33674 -12.26899 -12.08771 -11.98130 -11.73118 -11.52671 -11.47015 -11.13775 -10.89919 -10.85667 -10.64904 -10.59062 -9.90826 -9.57693 -9.11259 -9.09240 -9.00690 -8.75979 -8.34166 -8.27501 -5.94037 -3.98225 1.11151 1.22438 3.26413 3.27422 3.35658 3.40349 3.42201 3.76443 4.42728 4.49527 4.65310 4.81177 4.93194 5.07784 5.15294 5.27561 5.30750 5.39679 5.40811 5.54381 5.61454 5.71733 5.76520 5.82005 5.86504 5.88116 5.95570 5.98854 6.23095 6.25492 6.26555 6.30799 6.37566 6.46149 6.58741 6.80377 6.89383 6.97433 7.76510 7.83654 7.89631 8.09803 8.41536 8.81696 9.10255 9.65051 11.16887 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.003685 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.868905 B = 7595.897921 C = 7922.280399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.618 5.618 3 C 0.514 3.486 4 O -0.528 6.528 5 C -0.128 4.128 6 C 0.038 3.962 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.214 3.786 16 C -0.163 4.163 17 C -0.162 4.162 18 C -0.079 4.079 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 -21.991 0.014 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.354 5.354 3 C 0.304 3.696 4 O -0.404 6.404 5 C -0.168 4.168 6 C 0.001 3.999 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.529 5.529 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.130 3.870 16 C -0.221 4.221 17 C -0.220 4.220 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.775 -21.846 0.015 23.188 hybrid contribution -0.693 0.802 0.028 1.060 sum -8.468 -21.044 0.044 22.684 Atomic orbital electron populations 1.21758 0.80164 1.03037 1.01367 1.48244 1.06484 1.04972 1.75745 1.21497 0.88458 0.85200 0.74405 1.90590 1.14284 1.87109 1.48422 1.21897 1.00695 0.92029 1.02165 1.18887 0.93151 0.89329 0.98540 1.21192 0.92871 0.91076 1.51414 0.92727 1.25018 0.94818 0.99173 0.95332 1.69988 1.06040 1.26649 1.50178 0.86662 0.79557 0.83228 0.78538 1.20265 1.21299 1.20258 1.19131 0.89933 0.81270 0.96651 1.22286 1.00222 1.03382 0.96177 1.22274 1.00534 1.03181 0.96035 1.19886 0.97730 0.96820 0.93528 1.21151 0.96595 0.96786 0.97721 1.21144 0.98080 0.96410 0.98342 1.21165 1.00003 0.99968 0.92782 1.21146 0.97624 0.97363 0.97905 1.21231 0.97411 0.95847 0.98282 0.93187 0.90425 0.91721 0.90404 0.90431 0.95867 0.95872 0.92925 0.92217 0.89310 0.92669 0.92549 0.89805 0.92074 0.85793 0.86113 0.86272 0.86119 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 9.28 59.85 0.56 1.54 16 2 N -0.62 -9.42 2.82 -167.87 -0.47 -9.89 16 3 C 0.51 10.04 7.10 -10.98 -0.08 9.96 16 4 O -0.53 -12.04 12.20 5.56 0.07 -11.97 16 5 C -0.13 -2.66 4.12 -27.88 -0.11 -2.77 16 6 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 11 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.21 2.92 0.90 -132.97 -0.12 2.80 16 16 C -0.16 -2.28 7.85 37.16 0.29 -1.99 16 17 C -0.16 -2.22 7.51 37.16 0.28 -1.94 16 18 C -0.08 -0.90 3.05 -104.62 -0.32 -1.22 16 19 C -0.10 -1.09 8.79 -39.58 -0.35 -1.43 16 20 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 23 C -0.11 -1.12 8.51 -39.59 -0.34 -1.46 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.94 6.26 -51.93 -0.32 0.62 16 26 H 0.06 0.72 6.28 -51.93 -0.33 0.40 16 27 H 0.08 1.49 7.42 -51.93 -0.39 1.11 16 28 H 0.08 1.50 8.11 -51.93 -0.42 1.07 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.52 6.01 -51.93 -0.31 1.21 16 34 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 35 H 0.06 0.71 6.62 -51.93 -0.34 0.37 16 36 H 0.08 1.40 6.32 -51.93 -0.33 1.07 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.12 1.27 6.40 -52.49 -0.34 0.93 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.13 1.23 6.01 -52.48 -0.32 0.91 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -32.84 332.06 -7.95 -40.79 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.35 Total: -0.15 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.91 Total: -13.72 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.26 Total: -36.72 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.84 -7.95 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589797776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.879 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds