Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00241 * 2 1 4 4 O 1.21278 * 120.00371 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.99788 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.50694 * 109.47075 * 179.97438 * 6 5 3 8 8 H 1.07995 * 120.00122 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99962 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99534 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99922 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47151 * 60.00229 * 11 9 7 13 13 H 1.48500 * 109.47022 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47435 * 300.00252 * 11 9 7 15 15 C 1.46499 * 120.00415 * 180.02562 * 2 1 3 16 16 C 1.53006 * 109.47438 * 237.86121 * 15 2 1 17 17 C 1.52998 * 109.47302 * 117.85892 * 15 2 1 18 18 C 1.50708 * 109.46754 * 357.86141 * 15 2 1 19 19 C 1.38238 * 119.99673 * 277.23294 * 18 15 2 20 20 C 1.38230 * 119.99693 * 179.97438 * 19 18 15 21 21 C 1.38238 * 120.00399 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99428 * 0.27832 * 21 20 19 23 23 C 1.38224 * 120.00106 * 97.21582 * 18 15 2 24 24 H 1.09002 * 109.46586 * 264.81081 * 1 2 3 25 25 H 1.08994 * 109.46921 * 24.80973 * 1 2 3 26 26 H 1.08997 * 109.46881 * 144.81557 * 1 2 3 27 27 H 1.09004 * 109.46825 * 299.99986 * 5 3 2 28 28 H 1.08995 * 109.47274 * 59.99551 * 5 3 2 29 29 H 1.08999 * 109.46506 * 299.99690 * 6 5 3 30 30 H 1.08994 * 109.47020 * 59.99522 * 6 5 3 31 31 H 0.96999 * 119.99291 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.47121 * 179.97438 * 16 15 2 33 33 H 1.08991 * 109.46906 * 299.99767 * 16 15 2 34 34 H 1.09006 * 109.46694 * 59.99619 * 16 15 2 35 35 H 1.08999 * 109.47426 * 299.99911 * 17 15 2 36 36 H 1.09001 * 109.47370 * 60.00685 * 17 15 2 37 37 H 1.09001 * 109.47152 * 180.02562 * 17 15 2 38 38 H 1.07998 * 119.99795 * 359.97438 * 19 18 15 39 39 H 1.08008 * 120.00015 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.00151 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.99420 * 179.72762 * 22 21 20 42 42 H 1.08007 * 120.00340 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6353 -0.0002 7 6 1.6261 4.9403 -0.0002 8 1 0.5461 4.9403 0.0006 9 6 2.3155 6.1344 -0.0004 10 7 3.6306 6.1344 0.0001 11 14 1.3814 7.7521 -0.0011 12 1 0.5273 7.8311 1.2111 13 1 2.3464 8.8808 -0.0005 14 1 0.5280 7.8304 -1.2139 15 6 2.1976 -1.2687 -0.0006 16 6 3.1172 -1.3272 1.2209 17 6 3.0363 -1.3727 -1.2759 18 6 1.2191 -2.4137 0.0519 19 6 0.6942 -2.8192 1.2648 20 6 -0.2037 -3.8691 1.3129 21 6 -0.5771 -4.5132 0.1482 22 6 -0.0482 -4.1110 -1.0640 23 6 0.8462 -3.0582 -1.1126 24 1 -0.3632 -0.0930 1.0235 25 1 -0.3633 0.9328 -0.4312 26 1 -0.3633 -0.8399 -0.5921 27 1 0.7584 2.5302 -0.8892 28 1 0.7590 2.5299 0.8907 29 1 3.0068 3.5775 0.8894 30 1 3.0056 3.5775 -0.8906 31 1 4.1155 6.9744 -0.0004 32 1 3.6619 -2.2714 1.2207 33 1 3.8248 -0.4991 1.1829 34 1 2.5195 -1.2531 2.1295 35 1 2.3813 -1.3311 -2.1461 36 1 3.7441 -0.5446 -1.3139 37 1 3.5811 -2.3169 -1.2765 38 1 0.9857 -2.3157 2.1747 39 1 -0.6141 -4.1857 2.2605 40 1 -1.2783 -5.3337 0.1859 41 1 -0.3366 -4.6171 -1.9735 42 1 1.2564 -2.7415 -2.0603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589797776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = -32.784557 kcal Electronic energy + Delta-G solvation = -21490.426200 eV Core-core repulsion = 18434.530786 eV Total energy + Delta-G solvation = -3055.895414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71332 -39.95155 -37.17970 -35.60993 -34.40913 -32.59939 -31.97822 -30.73550 -28.36706 -27.90681 -27.04087 -24.76227 -23.49980 -23.07809 -21.26974 -19.56796 -18.61527 -18.12179 -17.31259 -17.06029 -16.76780 -16.44381 -15.91494 -15.51765 -14.92139 -14.78499 -14.65661 -14.41434 -14.20774 -13.84206 -13.77293 -13.55387 -13.26966 -13.20527 -12.97888 -12.91257 -12.73612 -12.50993 -12.49548 -12.43533 -11.89729 -11.83290 -11.58041 -11.55308 -11.29961 -10.55646 -10.41253 -9.80073 -9.70950 -9.55834 -8.17625 -6.31821 0.36186 0.53009 1.41738 1.46428 1.54136 1.73750 2.10751 2.43513 2.97153 3.15091 3.45708 3.80858 3.93074 4.07664 4.17788 4.26339 4.27114 4.33217 4.47436 4.50227 4.60770 4.61777 4.67318 4.71428 4.72314 4.83601 4.87391 4.87595 5.06982 5.09400 5.19012 5.23410 5.27309 5.48743 5.58306 5.63706 5.65908 5.73044 5.76550 5.85833 6.11816 6.18266 6.47366 6.86461 7.33047 7.38591 8.94827 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.003685 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.868905 B = 7595.897921 C = 7922.280399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.511 3.489 4 O -0.573 6.573 5 C -0.116 4.116 6 C 0.046 3.954 7 C -0.545 4.545 8 H 0.074 0.926 9 C -0.006 4.006 10 N -0.937 5.937 11 Si 0.974 3.026 12 H -0.262 1.262 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.211 3.789 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.117 4.117 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.097 0.903 29 H -0.019 1.019 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 -23.596 -0.035 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.301 3.699 4 O -0.452 6.452 5 C -0.156 4.156 6 C 0.009 3.991 7 C -0.582 4.582 8 H 0.092 0.908 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.797 3.203 12 H -0.187 1.187 13 H -0.213 1.213 14 H -0.187 1.187 15 C 0.128 3.872 16 C -0.216 4.216 17 C -0.215 4.215 18 C -0.091 4.091 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.135 4.135 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.281 -23.497 -0.034 26.065 hybrid contribution 0.374 1.166 0.050 1.226 sum -10.907 -22.331 0.016 24.852 Atomic orbital electron populations 1.21983 0.77962 1.04050 1.02736 1.48193 1.07842 1.04355 1.73616 1.21241 0.87809 0.86201 0.74680 1.90591 1.16077 1.87824 1.50735 1.21651 0.99324 0.90570 1.04049 1.18650 0.93575 0.92304 0.94591 1.21682 0.93931 0.91682 1.50951 0.90763 1.26135 0.95722 1.03913 0.94591 1.70175 1.08305 1.27854 1.51390 0.85377 0.78074 0.77332 0.79491 1.18690 1.21292 1.18657 1.19221 0.90538 0.81361 0.96117 1.22212 0.99826 1.02641 0.96951 1.22210 1.00115 1.02515 0.96706 1.19616 0.98298 0.96570 0.94636 1.21193 0.97223 0.97561 0.97148 1.21405 0.97341 0.95622 0.99660 1.21527 0.99651 1.00065 0.92245 1.21426 0.96757 0.96661 0.99162 1.21308 0.97966 0.96432 0.97832 0.91728 0.90022 0.89952 0.88321 0.88472 1.00018 0.99983 0.92859 0.90496 0.93103 0.92003 0.91560 0.93586 0.90233 0.86149 0.84103 0.83681 0.83941 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.69 9.28 127.77 1.19 2.87 16 2 N -0.61 -18.33 2.82 -803.41 -2.27 -20.60 16 3 C 0.51 20.67 7.10 87.66 0.62 21.30 16 4 O -0.57 -28.10 12.20 -3.02 -0.04 -28.13 16 5 C -0.12 -4.89 4.12 29.85 0.12 -4.77 16 6 C 0.05 2.64 4.26 29.85 0.13 2.77 16 7 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 9 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 10 N -0.94 -60.20 13.29 21.45 0.28 -59.91 16 11 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 15 C 0.21 5.71 0.90 2.86 0.00 5.71 16 16 C -0.16 -4.55 7.85 71.98 0.57 -3.99 16 17 C -0.16 -4.38 7.51 71.98 0.54 -3.84 16 18 C -0.09 -1.89 3.05 -19.87 -0.06 -1.95 16 19 C -0.11 -2.09 8.79 22.27 0.20 -1.89 16 20 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 21 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 22 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 23 C -0.12 -2.10 8.51 22.27 0.19 -1.91 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.79 6.26 -2.39 -0.01 1.78 16 26 H 0.08 1.61 6.28 -2.39 -0.02 1.60 16 27 H 0.10 3.71 7.42 -2.38 -0.02 3.69 16 28 H 0.10 3.68 8.11 -2.39 -0.02 3.66 16 29 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 30 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 31 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.87 6.01 -2.39 -0.01 1.85 16 34 H 0.06 1.64 6.54 -2.38 -0.02 1.62 16 35 H 0.07 1.66 6.62 -2.39 -0.02 1.64 16 36 H 0.05 1.64 6.32 -2.39 -0.02 1.62 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.12 2.26 6.40 -2.91 -0.02 2.24 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 42 H 0.13 2.20 6.01 -2.91 -0.02 2.18 16 Total: -1.00 -75.40 332.06 5.86 -69.54 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.00 Total: 13.50 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.86 Total: -21.16 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.98 Total: -80.51 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.04 Total: -28.13 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.40 5.86 -69.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589797776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.757 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds