Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.80433 * 2 1 4 4 C 1.54604 * 110.73770 * 123.29494 * 2 1 3 5 5 N 1.47910 * 102.62911 * 143.89546 * 4 2 1 6 6 C 1.46895 * 111.00140 * 94.58041 * 5 4 2 7 7 C 1.52999 * 109.47196 * 170.14017 * 6 5 4 8 8 O 1.42892 * 109.47347 * 64.99728 * 7 6 5 9 9 C 1.42903 * 114.00304 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47333 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00076 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99973 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00071 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47007 * 60.00174 * 14 12 10 16 16 H 1.48496 * 109.47405 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47415 * 300.00486 * 14 12 10 18 18 C 1.40037 * 107.88742 * 332.75766 * 5 4 2 19 19 C 1.39402 * 129.94815 * 198.01340 * 18 5 4 20 20 C 1.37915 * 120.19749 * 180.42371 * 19 18 5 21 21 C 1.38300 * 120.26415 * 0.07148 * 20 19 18 22 22 C 1.38300 * 119.88466 * 359.88140 * 21 20 19 23 23 C 1.37922 * 120.07853 * 359.97211 * 22 21 20 24 24 H 1.08990 * 109.47297 * 296.71064 * 1 2 3 25 25 H 1.09002 * 109.46674 * 56.70592 * 1 2 3 26 26 H 1.09003 * 109.47241 * 176.69977 * 1 2 3 27 27 H 1.09000 * 109.47543 * 183.29177 * 3 2 1 28 28 H 1.08994 * 109.47075 * 303.29477 * 3 2 1 29 29 H 1.09004 * 109.47005 * 63.29004 * 3 2 1 30 30 H 1.08995 * 110.78019 * 25.60491 * 4 2 1 31 31 H 1.09001 * 110.77808 * 262.17976 * 4 2 1 32 32 H 1.09005 * 109.47131 * 290.13747 * 6 5 4 33 33 H 1.09002 * 109.47227 * 50.13711 * 6 5 4 34 34 H 1.09001 * 109.47115 * 184.99976 * 7 6 5 35 35 H 1.09005 * 109.46728 * 304.99746 * 7 6 5 36 36 H 1.09004 * 109.46653 * 299.99726 * 9 8 7 37 37 H 1.08997 * 109.46959 * 59.99821 * 9 8 7 38 38 H 0.97000 * 119.99909 * 179.97438 * 13 12 10 39 39 H 1.08004 * 119.90633 * 0.40198 * 19 18 5 40 40 H 1.08002 * 119.86365 * 179.79276 * 20 19 18 41 41 H 1.08007 * 120.05533 * 179.86582 * 21 20 19 42 42 H 1.07996 * 119.96061 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4302 0.0000 4 6 2.0774 -0.7937 1.2085 5 7 3.2825 -1.4440 0.6493 6 6 4.4845 -0.6425 0.9152 7 6 5.7292 -1.4520 0.5460 8 8 5.7398 -1.6937 -0.8623 9 6 6.8669 -2.4471 -1.3143 10 6 6.7761 -2.6409 -2.8060 11 1 5.9409 -2.2303 -3.3541 12 6 7.7591 -3.3425 -3.4711 13 7 8.7758 -3.8430 -2.8037 14 14 7.6461 -3.5834 -5.3201 15 1 7.6335 -2.2591 -5.9920 16 1 8.8180 -4.3651 -5.7900 17 1 6.3973 -4.3169 -5.6484 18 6 3.0831 -1.6082 -0.7270 19 6 3.7378 -2.4410 -1.6332 20 6 3.3792 -2.4350 -2.9649 21 6 2.3692 -1.6023 -3.4110 22 6 1.7142 -0.7739 -2.5180 23 6 2.0670 -0.7783 -1.1847 24 1 -0.3633 0.4619 0.9179 25 1 -0.3633 0.5641 -0.8590 26 1 -0.3634 -1.0260 -0.0592 27 1 3.1615 1.4055 -0.0590 28 1 1.6751 1.9702 -0.8589 29 1 1.7707 1.9339 0.9180 30 1 1.3549 -1.5390 1.5411 31 1 2.3441 -0.1214 2.0240 32 1 4.4532 0.2686 0.3176 33 1 4.5210 -0.3821 1.9730 34 1 6.6223 -0.8930 0.8255 35 1 5.7148 -2.4034 1.0778 36 1 7.7838 -1.9090 -1.0734 37 1 6.8757 -3.4190 -0.8211 38 1 9.4672 -4.3369 -3.2716 39 1 4.5285 -3.0926 -1.2915 40 1 3.8923 -3.0800 -3.6629 41 1 2.0925 -1.5988 -4.4550 42 1 0.9256 -0.1228 -2.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590167703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -1.144862 kcal Electronic energy + Delta-G solvation = -22422.968792 eV Core-core repulsion = 19368.445378 eV Total energy + Delta-G solvation = -3054.523414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83051 -36.90964 -36.49496 -34.13208 -32.66128 -30.13306 -29.50505 -28.49933 -27.37984 -26.82016 -24.71945 -22.61584 -22.32520 -21.93141 -20.21341 -19.18425 -16.59594 -16.05139 -15.88971 -15.43555 -15.28586 -14.98968 -14.45440 -14.25593 -13.60501 -13.49303 -13.28177 -13.21900 -12.89284 -12.49113 -12.24512 -11.97454 -11.84853 -11.65031 -11.50638 -11.40731 -11.10207 -11.00103 -10.84103 -10.75998 -10.62741 -10.51301 -10.02320 -9.90557 -9.12442 -8.82639 -8.78565 -8.24367 -7.87784 -7.32386 -6.10196 -4.11287 1.93017 2.12860 3.30989 3.34927 3.37686 3.99080 4.31842 4.42138 4.58959 4.80594 4.92485 5.06559 5.23959 5.26687 5.36400 5.47810 5.52831 5.57867 5.60440 5.72833 5.78495 5.79030 5.83030 5.97403 6.02961 6.07211 6.11630 6.20449 6.27502 6.30754 6.40253 6.46708 6.67149 6.98305 7.05318 7.11530 7.23138 7.41798 7.44577 7.47478 7.81241 7.88994 8.15607 8.55915 9.02171 9.53436 11.01394 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.005921 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.783366 B = 4727.483487 C = 5561.940845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C -0.136 4.136 4 C 0.057 3.943 5 N -0.489 5.489 6 C 0.059 3.941 7 C 0.058 3.942 8 O -0.381 6.381 9 C 0.191 3.809 10 C -0.511 4.511 11 H 0.072 0.928 12 C 0.058 3.942 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.085 3.915 19 C -0.031 4.031 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.111 4.111 23 C -0.136 4.136 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.002 0.998 37 H 0.005 0.995 38 H 0.263 0.737 39 H 0.146 0.854 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 7.284 6.550 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.053 4.053 3 C -0.193 4.193 4 C -0.070 4.070 5 N -0.207 5.207 6 C -0.067 4.067 7 C -0.020 4.020 8 O -0.301 6.301 9 C 0.117 3.883 10 C -0.549 4.549 11 H 0.090 0.910 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.010 4.010 19 C -0.050 4.050 20 C -0.127 4.127 21 C -0.153 4.153 22 C -0.130 4.130 23 C -0.138 4.138 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.989 6.763 6.707 16.923 hybrid contribution 0.383 0.545 -1.182 1.357 sum -13.606 7.308 5.525 16.403 Atomic orbital electron populations 1.21696 0.93600 1.01953 1.01393 1.20670 0.95979 0.95122 0.93559 1.21892 1.01464 0.94528 1.01457 1.23249 0.91661 0.96307 0.95762 1.60196 1.03057 1.46395 1.11013 1.22400 0.89160 0.95045 1.00088 1.22276 0.95126 0.98323 0.86245 1.88120 1.46894 1.76044 1.19063 1.20175 0.83186 0.89739 0.95218 1.21093 1.08347 1.34083 0.91381 0.91032 1.24929 0.95060 0.95579 0.98797 1.69954 1.11284 1.36451 1.36071 0.86507 0.77609 0.78330 0.84736 1.20116 1.21270 1.19913 1.19318 0.96719 0.96766 0.88209 1.20948 0.95466 0.97133 0.91447 1.21023 0.96445 0.99386 0.95872 1.20966 0.97726 0.97972 0.98654 1.20066 1.00758 1.00418 0.91720 1.20673 1.00733 0.98410 0.94003 0.92675 0.92643 0.92369 0.92169 0.92485 0.92584 0.89714 0.90402 0.93367 0.90147 0.94072 0.93515 0.97999 0.97723 0.92704 0.83654 0.85774 0.86919 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.47 37.16 0.31 -1.04 16 2 C -0.05 -0.66 0.96 -154.39 -0.15 -0.81 16 3 C -0.14 -1.61 8.48 37.16 0.32 -1.29 16 4 C 0.06 0.73 6.09 -2.42 -0.01 0.71 16 5 N -0.49 -7.89 5.06 -169.02 -0.85 -8.75 16 6 C 0.06 0.91 5.17 -3.83 -0.02 0.89 16 7 C 0.06 1.07 6.20 37.16 0.23 1.31 16 8 O -0.38 -8.63 5.23 -35.23 -0.18 -8.82 16 9 C 0.19 4.99 4.99 36.00 0.18 5.17 16 10 C -0.51 -14.14 8.84 -34.44 -0.30 -14.45 16 11 H 0.07 1.94 6.13 -52.48 -0.32 1.62 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 14 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 C 0.08 1.55 5.09 -83.41 -0.42 1.12 16 19 C -0.03 -0.62 6.77 -39.27 -0.27 -0.89 16 20 C -0.11 -2.09 8.92 -39.68 -0.35 -2.44 16 21 C -0.13 -2.27 10.06 -39.54 -0.40 -2.66 16 22 C -0.11 -1.76 9.88 -39.67 -0.39 -2.15 16 23 C -0.14 -2.19 5.00 -104.04 -0.52 -2.71 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.81 5.72 -51.93 -0.30 0.51 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.02 7.92 -51.93 -0.41 0.61 16 31 H 0.08 0.83 7.37 -51.93 -0.38 0.44 16 32 H 0.05 0.79 5.74 -51.93 -0.30 0.49 16 33 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.15 3.30 5.52 -52.48 -0.29 3.01 16 40 H 0.12 2.42 7.75 -52.49 -0.41 2.02 16 41 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -29.74 326.52 -8.90 -38.64 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.60 Total: 0.98 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.90 Total: -17.73 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.12 Total: -34.38 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.18 Total: -8.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.74 -8.90 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.497 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds