Wall clock time and date at job start Mon Mar 30 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.80433 * 2 1 4 4 C 1.54604 * 110.73770 * 123.29494 * 2 1 3 5 5 N 1.47910 * 102.62911 * 143.89546 * 4 2 1 6 6 C 1.46895 * 111.00140 * 94.58041 * 5 4 2 7 7 C 1.52999 * 109.47196 * 170.14017 * 6 5 4 8 8 O 1.42892 * 109.47347 * 64.99728 * 7 6 5 9 9 C 1.42903 * 114.00304 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47333 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00076 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99973 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00071 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47007 * 60.00174 * 14 12 10 16 16 H 1.48496 * 109.47405 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47415 * 300.00486 * 14 12 10 18 18 C 1.40037 * 107.88742 * 332.75766 * 5 4 2 19 19 C 1.39402 * 129.94815 * 198.01340 * 18 5 4 20 20 C 1.37915 * 120.19749 * 180.42371 * 19 18 5 21 21 C 1.38300 * 120.26415 * 0.07148 * 20 19 18 22 22 C 1.38300 * 119.88466 * 359.88140 * 21 20 19 23 23 C 1.37922 * 120.07853 * 359.97211 * 22 21 20 24 24 H 1.08990 * 109.47297 * 296.71064 * 1 2 3 25 25 H 1.09002 * 109.46674 * 56.70592 * 1 2 3 26 26 H 1.09003 * 109.47241 * 176.69977 * 1 2 3 27 27 H 1.09000 * 109.47543 * 183.29177 * 3 2 1 28 28 H 1.08994 * 109.47075 * 303.29477 * 3 2 1 29 29 H 1.09004 * 109.47005 * 63.29004 * 3 2 1 30 30 H 1.08995 * 110.78019 * 25.60491 * 4 2 1 31 31 H 1.09001 * 110.77808 * 262.17976 * 4 2 1 32 32 H 1.09005 * 109.47131 * 290.13747 * 6 5 4 33 33 H 1.09002 * 109.47227 * 50.13711 * 6 5 4 34 34 H 1.09001 * 109.47115 * 184.99976 * 7 6 5 35 35 H 1.09005 * 109.46728 * 304.99746 * 7 6 5 36 36 H 1.09004 * 109.46653 * 299.99726 * 9 8 7 37 37 H 1.08997 * 109.46959 * 59.99821 * 9 8 7 38 38 H 0.97000 * 119.99909 * 179.97438 * 13 12 10 39 39 H 1.08004 * 119.90633 * 0.40198 * 19 18 5 40 40 H 1.08002 * 119.86365 * 179.79276 * 20 19 18 41 41 H 1.08007 * 120.05533 * 179.86582 * 21 20 19 42 42 H 1.07996 * 119.96061 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4302 0.0000 4 6 2.0774 -0.7937 1.2085 5 7 3.2825 -1.4440 0.6493 6 6 4.4845 -0.6425 0.9152 7 6 5.7292 -1.4520 0.5460 8 8 5.7398 -1.6937 -0.8623 9 6 6.8669 -2.4471 -1.3143 10 6 6.7761 -2.6409 -2.8060 11 1 5.9409 -2.2303 -3.3541 12 6 7.7591 -3.3425 -3.4711 13 7 8.7758 -3.8430 -2.8037 14 14 7.6461 -3.5834 -5.3201 15 1 7.6335 -2.2591 -5.9920 16 1 8.8180 -4.3651 -5.7900 17 1 6.3973 -4.3169 -5.6484 18 6 3.0831 -1.6082 -0.7270 19 6 3.7378 -2.4410 -1.6332 20 6 3.3792 -2.4350 -2.9649 21 6 2.3692 -1.6023 -3.4110 22 6 1.7142 -0.7739 -2.5180 23 6 2.0670 -0.7783 -1.1847 24 1 -0.3633 0.4619 0.9179 25 1 -0.3633 0.5641 -0.8590 26 1 -0.3634 -1.0260 -0.0592 27 1 3.1615 1.4055 -0.0590 28 1 1.6751 1.9702 -0.8589 29 1 1.7707 1.9339 0.9180 30 1 1.3549 -1.5390 1.5411 31 1 2.3441 -0.1214 2.0240 32 1 4.4532 0.2686 0.3176 33 1 4.5210 -0.3821 1.9730 34 1 6.6223 -0.8930 0.8255 35 1 5.7148 -2.4034 1.0778 36 1 7.7838 -1.9090 -1.0734 37 1 6.8757 -3.4190 -0.8211 38 1 9.4672 -4.3369 -3.2716 39 1 4.5285 -3.0926 -1.2915 40 1 3.8923 -3.0800 -3.6629 41 1 2.0925 -1.5988 -4.4550 42 1 0.9256 -0.1228 -2.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590167703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:35 Heat of formation + Delta-G solvation = -18.091599 kcal Electronic energy + Delta-G solvation = -22423.703657 eV Core-core repulsion = 19368.445378 eV Total energy + Delta-G solvation = -3055.258279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.03782 -38.63513 -37.78699 -35.40581 -34.70612 -31.57556 -30.79069 -29.94721 -28.77286 -28.16305 -25.87048 -24.48536 -23.88286 -23.29893 -21.53529 -20.31326 -18.61627 -17.51775 -17.43806 -16.96742 -16.64519 -16.46164 -16.09464 -15.59961 -14.99775 -14.80055 -14.72315 -14.38986 -14.22577 -13.81220 -13.43927 -13.34501 -13.11949 -13.07073 -12.93617 -12.72426 -12.63555 -12.62614 -12.40683 -12.15805 -12.01777 -11.78533 -11.57762 -11.25352 -11.19342 -10.79373 -10.18264 -10.04769 -9.32253 -8.64134 -8.27314 -6.36251 0.58654 0.75503 1.39015 1.42500 1.50244 2.35260 2.76855 3.03978 3.07453 3.36886 3.55835 3.80463 4.05067 4.09822 4.26723 4.29567 4.35256 4.41005 4.44808 4.62128 4.67565 4.72577 4.77649 4.80005 4.85035 4.88992 4.95803 5.00127 5.04996 5.12073 5.12779 5.21681 5.29189 5.36724 5.46733 5.63350 5.68425 5.77917 5.87950 6.02269 6.05859 6.17543 6.53910 6.58628 6.88443 7.34199 8.85213 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.005921 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.783366 B = 4727.483487 C = 5561.940845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.048 4.048 3 C -0.133 4.133 4 C 0.057 3.943 5 N -0.504 5.504 6 C 0.069 3.931 7 C 0.046 3.954 8 O -0.382 6.382 9 C 0.210 3.790 10 C -0.525 4.525 11 H 0.072 0.928 12 C 0.006 3.994 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.263 1.263 18 C 0.070 3.930 19 C -0.057 4.057 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.110 4.110 23 C -0.135 4.135 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.119 0.881 34 H 0.048 0.952 35 H 0.040 0.960 36 H -0.023 1.023 37 H -0.020 1.020 38 H 0.267 0.733 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.703 9.340 6.704 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 C -0.190 4.190 4 C -0.069 4.069 5 N -0.223 5.223 6 C -0.056 4.056 7 C -0.031 4.031 8 O -0.302 6.302 9 C 0.135 3.865 10 C -0.563 4.563 11 H 0.090 0.910 12 C -0.192 4.192 13 N -0.574 5.574 14 Si 0.793 3.207 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.188 1.188 18 C -0.026 4.026 19 C -0.077 4.077 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.128 4.128 23 C -0.137 4.137 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.058 0.942 36 H -0.005 1.005 37 H -0.003 1.003 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.155 0.845 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.565 8.830 6.881 19.993 hybrid contribution 1.129 -0.081 -1.122 1.594 sum -15.436 8.749 5.759 18.654 Atomic orbital electron populations 1.21670 0.91458 1.01976 1.03046 1.20755 0.97569 0.95115 0.91494 1.21874 1.00061 0.93944 1.03139 1.23433 0.90228 0.96870 0.96420 1.60148 1.04589 1.47453 1.10078 1.22385 0.87396 0.93732 1.02118 1.22589 0.97637 0.98838 0.84023 1.88152 1.45063 1.75309 1.21673 1.19720 0.83363 0.88572 0.94839 1.21377 1.08457 1.34263 0.92192 0.90979 1.25851 0.94479 0.94983 1.03843 1.70078 1.12078 1.37158 1.38134 0.85438 0.78093 0.78618 0.78592 1.19316 1.20564 1.18758 1.19451 0.97194 0.96775 0.89151 1.20716 0.96016 0.98262 0.92709 1.20984 0.97984 1.00657 0.95369 1.21224 0.96735 0.97234 1.00209 1.20444 1.00838 0.99991 0.91543 1.21173 0.99599 0.97717 0.95243 0.90211 0.91982 0.93066 0.94191 0.92184 0.89752 0.89045 0.87606 0.93838 0.86285 0.93345 0.94152 1.00524 1.00271 0.92461 0.87424 0.87411 0.84505 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.47 71.98 0.61 -1.46 16 2 C -0.05 -1.06 0.96 -52.10 -0.05 -1.11 16 3 C -0.13 -2.63 8.48 71.98 0.61 -2.02 16 4 C 0.06 1.26 6.09 86.65 0.53 1.78 16 5 N -0.50 -15.73 5.06 -688.65 -3.48 -19.21 16 6 C 0.07 2.06 5.17 86.30 0.45 2.51 16 7 C 0.05 1.77 6.20 71.98 0.45 2.21 16 8 O -0.38 -18.23 5.23 -148.98 -0.78 -19.01 16 9 C 0.21 11.69 4.99 71.24 0.36 12.04 16 10 C -0.53 -30.37 8.84 25.60 0.23 -30.15 16 11 H 0.07 4.09 6.13 -2.91 -0.02 4.07 16 12 C 0.01 0.36 5.46 84.65 0.46 0.82 16 13 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 14 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.07 2.53 5.09 38.28 0.19 2.73 16 19 C -0.06 -2.44 6.77 22.47 0.15 -2.29 16 20 C -0.13 -5.24 8.92 22.21 0.20 -5.05 16 21 C -0.14 -4.46 10.06 22.30 0.22 -4.23 16 22 C -0.11 -3.24 9.88 22.21 0.22 -3.02 16 23 C -0.13 -4.10 5.00 -19.49 -0.10 -4.20 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.96 5.72 -2.39 -0.01 0.94 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.09 1.91 7.92 -2.39 -0.02 1.89 16 31 H 0.11 1.75 7.37 -2.39 -0.02 1.74 16 32 H 0.04 1.36 5.74 -2.38 -0.01 1.35 16 33 H 0.12 2.62 7.85 -2.39 -0.02 2.60 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 36 H -0.02 -1.36 8.14 -2.38 -0.02 -1.38 16 37 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.11 5.32 5.52 -2.91 -0.02 5.31 16 40 H 0.11 4.49 7.75 -2.91 -0.02 4.47 16 41 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 42 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -67.49 326.52 3.56 -63.92 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.99 Total: 15.43 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 4.53 Total: -31.42 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -3.20 Total: -75.57 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.78 Total: -19.01 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.49 3.56 -63.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.831 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds