Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47226 * 2 1 4 4 C 1.53001 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46909 * 60.00209 * 3 2 1 6 6 C 1.53002 * 109.46765 * 60.00121 * 5 3 2 7 7 C 1.50696 * 109.47385 * 300.00359 * 3 2 1 8 8 O 1.21284 * 120.00069 * 119.99545 * 7 3 2 9 9 N 1.34785 * 119.99896 * 300.00092 * 7 3 2 10 10 C 1.39935 * 119.99524 * 174.89135 * 9 7 3 11 11 C 1.39299 * 119.94453 * 145.79205 * 10 9 7 12 12 C 1.38485 * 120.43032 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.32232 * 359.97392 * 12 11 10 14 14 C 1.40744 * 119.88304 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20739 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99710 * 205.18016 * 15 14 13 17 17 C 1.39934 * 120.00161 * 25.18447 * 15 14 13 18 18 N 1.30826 * 119.99540 * 16.78623 * 17 15 14 19 19 Si 1.86799 * 119.99849 * 196.79188 * 17 15 14 20 20 H 1.48504 * 109.47077 * 89.99743 * 19 17 15 21 21 H 1.48495 * 109.46852 * 209.99682 * 19 17 15 22 22 H 1.48495 * 109.47311 * 329.99519 * 19 17 15 23 23 C 1.38242 * 119.95176 * 325.51594 * 10 9 7 24 24 H 1.08995 * 109.46869 * 299.99444 * 1 2 3 25 25 H 1.08998 * 109.47542 * 59.99642 * 1 2 3 26 26 H 1.08999 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46609 * 240.00359 * 2 1 3 28 28 H 1.08998 * 109.47542 * 120.00358 * 2 1 3 29 29 H 1.09008 * 109.46609 * 60.00359 * 4 3 2 30 30 H 1.08997 * 109.46809 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.47091 * 300.00312 * 4 3 2 32 32 H 1.08999 * 109.46896 * 179.97438 * 5 3 2 33 33 H 1.08993 * 109.46852 * 300.00256 * 5 3 2 34 34 H 1.08999 * 109.47224 * 299.99567 * 6 5 3 35 35 H 1.08991 * 109.47577 * 59.99944 * 6 5 3 36 36 H 1.08998 * 109.46729 * 180.02562 * 6 5 3 37 37 H 0.96993 * 119.99624 * 354.88915 * 9 7 3 38 38 H 1.07998 * 119.78315 * 359.96913 * 11 10 9 39 39 H 1.07992 * 119.83690 * 180.02562 * 12 11 10 40 40 H 1.07991 * 120.05987 * 180.02562 * 13 12 11 41 41 H 0.97004 * 119.99404 * 180.02562 * 18 17 15 42 42 H 1.07993 * 120.15912 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 1.5300 2.1637 1.2493 6 6 2.0401 1.4423 2.4985 7 6 1.5377 2.1530 -1.2304 8 8 0.8404 3.1390 -1.1190 9 7 1.8632 1.6925 -2.4546 10 6 1.3111 2.2864 -3.5950 11 6 2.0627 2.3782 -4.7642 12 6 1.5261 2.9635 -5.8988 13 6 0.2424 3.4611 -5.8835 14 6 -0.5289 3.3754 -4.7094 15 6 -1.8479 3.8846 -4.6858 16 1 -2.2899 4.1961 -3.7508 17 6 -2.5805 3.9849 -5.8738 18 7 -2.1985 3.3231 -6.9357 19 14 -4.1038 5.0638 -5.9434 20 1 -3.7190 6.4375 -6.3562 21 1 -5.0638 4.5019 -6.9272 22 1 -4.7396 5.1098 -4.6022 23 6 0.0187 2.7760 -3.5613 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9337 0.9285 -0.8892 30 1 3.9333 2.4701 0.0002 31 1 3.9330 0.9288 0.8908 32 1 1.8938 3.1912 1.2496 33 1 0.4401 2.1636 1.2493 34 1 1.6768 0.4147 2.4985 35 1 3.1301 1.4423 2.4985 36 1 1.6765 1.9559 3.3885 37 1 2.4802 0.9495 -2.5450 38 1 3.0704 1.9905 -4.7860 39 1 2.1172 3.0293 -6.8002 40 1 -0.1720 3.9163 -6.7708 41 1 -2.7061 3.3929 -7.7593 42 1 -0.5665 2.7009 -2.6567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590884598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = -40.100176 kcal Electronic energy + Delta-G solvation = -21639.617661 eV Core-core repulsion = 18583.405018 eV Total energy + Delta-G solvation = -3056.212643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33012 -37.68323 -36.25350 -34.42680 -33.00468 -31.26201 -29.91908 -29.78681 -27.85254 -25.28897 -25.08714 -23.33770 -22.27252 -20.88286 -20.13406 -18.42420 -17.67008 -16.46940 -15.57826 -15.49340 -15.28171 -14.75571 -14.48318 -14.38373 -13.68090 -13.35013 -12.95703 -12.89140 -12.77918 -12.56273 -12.16213 -12.09419 -11.89216 -11.65246 -11.47271 -11.27045 -11.15054 -11.11025 -10.96525 -10.85843 -10.45881 -10.43717 -10.38565 -10.06538 -9.59681 -9.30113 -9.02283 -8.82875 -7.41834 -6.87047 -6.68007 -4.30814 2.66249 2.87425 3.11239 3.16189 3.23204 3.44006 3.69260 3.99073 4.60252 4.67399 4.74052 4.84400 5.16179 5.20308 5.34479 5.38666 5.47788 5.58350 5.64778 5.74617 5.78170 5.83707 5.92584 5.94376 6.11122 6.13132 6.26147 6.27977 6.29625 6.42726 6.50958 6.83828 7.06279 7.09572 7.11839 7.28948 7.61409 7.77416 8.01388 8.13000 8.23516 8.31932 8.67375 8.81301 8.97860 9.02545 10.24674 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.004687 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.948583 B = 5972.994073 C = 6649.361227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 C -0.079 4.079 4 C -0.143 4.143 5 C -0.102 4.102 6 C -0.154 4.154 7 C 0.516 3.484 8 O -0.518 6.518 9 N -0.668 5.668 10 C 0.153 3.847 11 C -0.263 4.263 12 C -0.093 4.093 13 C -0.172 4.172 14 C 0.120 3.880 15 C -0.459 4.459 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.209 4.209 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.279 0.721 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 -6.435 11.337 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.148 4.148 3 C -0.082 4.082 4 C -0.200 4.200 5 C -0.140 4.140 6 C -0.211 4.211 7 C 0.303 3.697 8 O -0.392 6.392 9 N -0.311 5.311 10 C 0.061 3.939 11 C -0.284 4.284 12 C -0.112 4.112 13 C -0.192 4.192 14 C 0.117 3.883 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.231 4.231 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.173 -5.790 11.217 14.519 hybrid contribution -0.324 0.012 -0.309 0.448 sum 6.849 -5.778 10.907 14.116 Atomic orbital electron populations 1.21881 0.95195 1.01727 1.02899 1.21610 0.96793 0.93929 1.02477 1.20886 0.96800 0.96453 0.94105 1.21913 0.92991 1.02692 1.02424 1.21385 1.01761 0.99086 0.91754 1.21909 1.01134 1.00662 0.97421 1.20451 0.80669 0.84384 0.84238 1.90734 1.36857 1.25275 1.86345 1.43486 1.47058 1.35442 1.05143 1.17454 0.92620 0.98750 0.85091 1.20043 0.98771 1.15218 0.94368 1.20456 0.95833 0.99111 0.95761 1.21337 0.92908 1.05060 0.99915 1.17494 0.92642 0.87850 0.90348 1.19586 0.97984 1.36996 0.94281 0.90413 1.25890 0.99206 0.93989 0.95015 1.69832 1.37927 1.32067 1.02340 0.86314 0.80627 0.80673 0.79122 1.19281 1.20369 1.18612 1.20953 0.93827 1.08294 0.99999 0.92134 0.92081 0.92602 0.91681 0.90774 0.92300 0.92017 0.91252 0.91363 0.90799 0.92437 0.92548 0.92752 0.77033 0.89416 0.89127 0.86360 0.90994 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.31 37.16 0.35 -1.67 16 2 C -0.11 -1.21 4.55 -26.73 -0.12 -1.33 16 3 C -0.08 -1.00 0.43 -155.66 -0.07 -1.07 16 4 C -0.14 -1.47 8.02 37.16 0.30 -1.17 16 5 C -0.10 -1.27 3.93 -26.73 -0.10 -1.38 16 6 C -0.15 -1.41 9.21 37.16 0.34 -1.07 16 7 C 0.52 9.26 4.94 -10.98 -0.05 9.21 16 8 O -0.52 -11.69 13.74 5.55 0.08 -11.61 16 9 N -0.67 -12.13 5.12 -9.91 -0.05 -12.18 16 10 C 0.15 3.52 6.25 -83.76 -0.52 2.99 16 11 C -0.26 -5.90 9.97 -39.10 -0.39 -6.29 16 12 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 13 C -0.17 -4.60 8.69 -38.84 -0.34 -4.94 16 14 C 0.12 3.34 5.57 -106.85 -0.59 2.75 16 15 C -0.46 -12.78 9.05 -37.74 -0.34 -13.13 16 16 H 0.08 2.14 7.90 -52.48 -0.41 1.73 16 17 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 18 N -0.80 -20.98 10.94 55.55 0.61 -20.37 16 19 Si 0.91 19.36 29.59 -169.99 -5.03 14.33 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.21 -5.51 8.39 -38.68 -0.32 -5.84 16 24 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 25 H 0.06 0.98 7.22 -51.93 -0.37 0.60 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.68 7.69 -51.92 -0.40 0.28 16 28 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 29 H 0.06 0.55 7.46 -51.92 -0.39 0.16 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.07 1.02 6.39 -51.93 -0.33 0.69 16 34 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 35 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 5.75 7.68 -40.82 -0.31 5.44 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 41 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 42 H 0.10 2.84 6.48 -52.49 -0.34 2.50 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -30.61 330.23 -8.00 -38.61 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.22 Total: 9.89 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.36 Total: -23.64 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.56 Total: -32.55 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.61 -8.00 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.490 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds