Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47226 * 2 1 4 4 C 1.53001 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46909 * 60.00209 * 3 2 1 6 6 C 1.53002 * 109.46765 * 60.00121 * 5 3 2 7 7 C 1.50696 * 109.47385 * 300.00359 * 3 2 1 8 8 O 1.21284 * 120.00069 * 119.99545 * 7 3 2 9 9 N 1.34785 * 119.99896 * 300.00092 * 7 3 2 10 10 C 1.39935 * 119.99524 * 174.89135 * 9 7 3 11 11 C 1.39299 * 119.94453 * 145.79205 * 10 9 7 12 12 C 1.38485 * 120.43032 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.32232 * 359.97392 * 12 11 10 14 14 C 1.40744 * 119.88304 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20739 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99710 * 205.18016 * 15 14 13 17 17 C 1.39934 * 120.00161 * 25.18447 * 15 14 13 18 18 N 1.30826 * 119.99540 * 16.78623 * 17 15 14 19 19 Si 1.86799 * 119.99849 * 196.79188 * 17 15 14 20 20 H 1.48504 * 109.47077 * 89.99743 * 19 17 15 21 21 H 1.48495 * 109.46852 * 209.99682 * 19 17 15 22 22 H 1.48495 * 109.47311 * 329.99519 * 19 17 15 23 23 C 1.38242 * 119.95176 * 325.51594 * 10 9 7 24 24 H 1.08995 * 109.46869 * 299.99444 * 1 2 3 25 25 H 1.08998 * 109.47542 * 59.99642 * 1 2 3 26 26 H 1.08999 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46609 * 240.00359 * 2 1 3 28 28 H 1.08998 * 109.47542 * 120.00358 * 2 1 3 29 29 H 1.09008 * 109.46609 * 60.00359 * 4 3 2 30 30 H 1.08997 * 109.46809 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.47091 * 300.00312 * 4 3 2 32 32 H 1.08999 * 109.46896 * 179.97438 * 5 3 2 33 33 H 1.08993 * 109.46852 * 300.00256 * 5 3 2 34 34 H 1.08999 * 109.47224 * 299.99567 * 6 5 3 35 35 H 1.08991 * 109.47577 * 59.99944 * 6 5 3 36 36 H 1.08998 * 109.46729 * 180.02562 * 6 5 3 37 37 H 0.96993 * 119.99624 * 354.88915 * 9 7 3 38 38 H 1.07998 * 119.78315 * 359.96913 * 11 10 9 39 39 H 1.07992 * 119.83690 * 180.02562 * 12 11 10 40 40 H 1.07991 * 120.05987 * 180.02562 * 13 12 11 41 41 H 0.97004 * 119.99404 * 180.02562 * 18 17 15 42 42 H 1.07993 * 120.15912 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 1.5300 2.1637 1.2493 6 6 2.0401 1.4423 2.4985 7 6 1.5377 2.1530 -1.2304 8 8 0.8404 3.1390 -1.1190 9 7 1.8632 1.6925 -2.4546 10 6 1.3111 2.2864 -3.5950 11 6 2.0627 2.3782 -4.7642 12 6 1.5261 2.9635 -5.8988 13 6 0.2424 3.4611 -5.8835 14 6 -0.5289 3.3754 -4.7094 15 6 -1.8479 3.8846 -4.6858 16 1 -2.2899 4.1961 -3.7508 17 6 -2.5805 3.9849 -5.8738 18 7 -2.1985 3.3231 -6.9357 19 14 -4.1038 5.0638 -5.9434 20 1 -3.7190 6.4375 -6.3562 21 1 -5.0638 4.5019 -6.9272 22 1 -4.7396 5.1098 -4.6022 23 6 0.0187 2.7760 -3.5613 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9337 0.9285 -0.8892 30 1 3.9333 2.4701 0.0002 31 1 3.9330 0.9288 0.8908 32 1 1.8938 3.1912 1.2496 33 1 0.4401 2.1636 1.2493 34 1 1.6768 0.4147 2.4985 35 1 3.1301 1.4423 2.4985 36 1 1.6765 1.9559 3.3885 37 1 2.4802 0.9495 -2.5450 38 1 3.0704 1.9905 -4.7860 39 1 2.1172 3.0293 -6.8002 40 1 -0.1720 3.9163 -6.7708 41 1 -2.7061 3.3929 -7.7593 42 1 -0.5665 2.7009 -2.6567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590884598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = -57.939739 kcal Electronic energy + Delta-G solvation = -21640.391242 eV Core-core repulsion = 18583.405018 eV Total energy + Delta-G solvation = -3056.986224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.74208 -39.37731 -37.64113 -36.22592 -34.83855 -32.21010 -31.76672 -31.02587 -29.49078 -27.27880 -26.10357 -24.28188 -23.80973 -22.78839 -21.78463 -19.84028 -19.40700 -17.84613 -17.32251 -17.05486 -16.58159 -16.41887 -16.01531 -15.67152 -15.13926 -14.70514 -14.66412 -14.23655 -14.02864 -13.77781 -13.54279 -13.46146 -13.02830 -12.97281 -12.93966 -12.79833 -12.76116 -12.46930 -12.22787 -12.18807 -11.97697 -11.85993 -11.52528 -11.41088 -11.31437 -11.14350 -10.84847 -10.46104 -9.41891 -8.76428 -8.62018 -6.39578 0.86380 0.98470 1.33998 1.46765 1.47570 1.84684 2.18770 2.26608 2.71532 3.58784 3.65975 3.73614 3.85989 4.14067 4.29656 4.44724 4.45729 4.51698 4.61035 4.66223 4.69549 4.78913 4.93815 4.95932 5.02901 5.04192 5.06914 5.10467 5.12322 5.20366 5.23556 5.28500 5.30920 5.31845 5.39739 5.59779 5.75675 5.85645 6.05814 6.09372 6.33305 6.65390 6.68029 6.91609 6.99248 7.36467 8.31277 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.004687 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.948583 B = 5972.994073 C = 6649.361227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.069 4.069 4 C -0.141 4.141 5 C -0.103 4.103 6 C -0.146 4.146 7 C 0.511 3.489 8 O -0.572 6.572 9 N -0.658 5.658 10 C 0.158 3.842 11 C -0.252 4.252 12 C -0.091 4.091 13 C -0.199 4.199 14 C 0.089 3.911 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.260 1.260 22 H -0.266 1.266 23 C -0.236 4.236 24 H 0.060 0.940 25 H 0.014 0.986 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.417 0.583 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.290 0.710 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.974 -8.203 12.099 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.143 4.143 3 C -0.072 4.072 4 C -0.198 4.198 5 C -0.141 4.141 6 C -0.203 4.203 7 C 0.300 3.700 8 O -0.450 6.450 9 N -0.303 5.303 10 C 0.065 3.935 11 C -0.273 4.273 12 C -0.109 4.109 13 C -0.218 4.218 14 C 0.086 3.914 15 C -0.534 4.534 16 H 0.078 0.922 17 C -0.176 4.176 18 N -0.447 5.447 19 Si 0.802 3.198 20 H -0.184 1.184 21 H -0.184 1.184 22 H -0.190 1.190 23 C -0.258 4.258 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.424 -7.605 11.986 17.039 hybrid contribution -0.921 0.511 -0.496 1.164 sum 8.503 -7.094 11.490 15.958 Atomic orbital electron populations 1.21885 0.97025 1.02191 1.00660 1.21682 0.95061 0.92716 1.04875 1.20942 0.98787 0.96753 0.90755 1.21964 0.90208 1.02789 1.04834 1.21387 1.00328 0.98715 0.93710 1.21871 1.02209 1.00874 0.95308 1.21615 0.79225 0.83722 0.85454 1.90715 1.39157 1.28029 1.87111 1.43421 1.47060 1.35762 1.04050 1.17564 0.91524 0.97354 0.87044 1.20486 1.00254 1.13445 0.93164 1.20843 0.94861 0.97680 0.97557 1.21298 0.94450 1.07025 0.99072 1.17837 0.93311 0.88692 0.91535 1.19725 0.99075 1.39777 0.94784 0.92210 1.26679 1.02204 0.94706 0.93973 1.69856 1.39373 1.32538 1.02939 0.85229 0.76643 0.78799 0.79153 1.18393 1.18367 1.19025 1.20893 0.95648 1.10403 0.98875 0.92145 0.96649 0.90711 0.90531 0.86990 0.90845 0.93135 0.87938 0.93430 0.93311 0.90942 0.90666 0.92307 0.74466 0.85046 0.85839 0.87750 0.89951 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.31 71.98 0.67 -3.31 16 2 C -0.11 -2.02 4.55 30.59 0.14 -1.88 16 3 C -0.07 -1.64 0.43 -52.93 -0.02 -1.67 16 4 C -0.14 -2.38 8.02 71.98 0.58 -1.80 16 5 C -0.10 -2.52 3.93 30.60 0.12 -2.40 16 6 C -0.15 -2.22 9.21 71.98 0.66 -1.55 16 7 C 0.51 18.58 4.94 87.65 0.43 19.02 16 8 O -0.57 -27.50 13.74 -3.04 -0.04 -27.54 16 9 N -0.66 -23.44 5.12 -303.64 -1.55 -25.00 16 10 C 0.16 7.36 6.25 38.10 0.24 7.60 16 11 C -0.25 -10.88 9.97 22.58 0.23 -10.65 16 12 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 13 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 14 C 0.09 5.28 5.57 -21.31 -0.12 5.16 16 15 C -0.50 -30.08 9.05 23.46 0.21 -29.87 16 16 H 0.06 3.61 7.90 -2.91 -0.02 3.59 16 17 C 0.04 2.12 5.16 85.25 0.44 2.55 16 18 N -0.82 -44.59 10.94 21.82 0.24 -44.35 16 19 Si 0.98 40.93 29.59 68.60 2.03 42.96 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 C -0.24 -13.22 8.39 22.85 0.19 -13.03 16 24 H 0.06 1.47 6.43 -2.39 -0.02 1.45 16 25 H 0.01 0.50 7.22 -2.39 -0.02 0.48 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.32 7.69 -2.38 -0.02 1.30 16 28 H 0.11 1.39 6.43 -2.39 -0.02 1.37 16 29 H 0.07 1.05 7.46 -2.38 -0.02 1.03 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.11 6.43 -2.39 -0.02 1.09 16 32 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.05 1.41 6.39 -2.39 -0.02 1.40 16 34 H 0.07 0.90 6.43 -2.39 -0.02 0.89 16 35 H 0.07 0.89 6.43 -2.39 -0.02 0.87 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.42 11.02 7.68 -92.71 -0.71 10.31 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 40 H 0.10 5.94 6.16 -2.92 -0.02 5.93 16 41 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 42 H 0.08 4.74 6.48 -2.91 -0.02 4.72 16 Total: -1.00 -73.40 330.23 5.17 -68.22 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.31 Total: 32.31 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 4.19 Total: -46.61 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.32 Total: -69.34 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.04 Total: -27.54 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -73.40 5.17 -68.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.285 kcal (2) G-P(sol) polarization free energy of solvation -73.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds