Wall clock time and date at job start Mon Mar 30 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47330 * 2 1 4 4 C 1.38229 * 120.00230 * 270.27821 * 3 2 1 5 5 C 1.38238 * 120.00124 * 180.28369 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.45911 * 5 4 3 7 7 C 1.50703 * 120.00257 * 180.27927 * 6 5 4 8 8 N 1.46900 * 109.46725 * 89.99983 * 7 6 5 9 9 C 1.47846 * 111.00374 * 290.84573 * 8 7 6 10 10 C 1.54909 * 104.79528 * 213.63848 * 9 8 7 11 11 C 1.55142 * 101.65478 * 37.06870 * 10 9 8 12 12 O 1.42892 * 110.70341 * 82.72993 * 11 10 9 13 13 C 1.50699 * 110.85206 * 205.89219 * 11 10 9 14 14 H 1.08003 * 119.99450 * 113.69315 * 13 11 10 15 15 C 1.37867 * 120.00258 * 293.68610 * 13 11 10 16 16 N 1.31514 * 120.00167 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00197 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47224 * 89.99935 * 17 15 13 19 19 H 1.48501 * 109.47612 * 210.00133 * 17 15 13 20 20 H 1.48511 * 109.47012 * 330.00051 * 17 15 13 21 21 C 1.47443 * 110.99882 * 170.00243 * 8 7 6 22 22 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 23 23 C 1.38234 * 119.99755 * 90.00186 * 3 2 1 24 24 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47063 * 299.99607 * 1 2 3 26 26 H 1.09007 * 109.47367 * 59.99406 * 1 2 3 27 27 H 1.09007 * 109.46769 * 240.00134 * 2 1 3 28 28 H 1.08998 * 109.47623 * 120.00616 * 2 1 3 29 29 H 1.08004 * 120.00244 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.00519 * 179.74530 * 5 4 3 31 31 H 1.08988 * 109.47584 * 210.00457 * 7 6 5 32 32 H 1.09000 * 109.47013 * 330.00974 * 7 6 5 33 33 H 1.08998 * 110.37119 * 332.46588 * 9 8 7 34 34 H 1.08997 * 110.37140 * 94.81215 * 9 8 7 35 35 H 1.09005 * 110.98730 * 278.97811 * 10 9 8 36 36 H 1.08995 * 111.02285 * 155.18147 * 10 9 8 37 37 H 0.96705 * 113.99976 * 66.39670 * 12 11 10 38 38 H 0.97006 * 119.99922 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.89518 * 242.66726 * 21 8 7 40 40 H 1.09005 * 109.89084 * 3.69106 * 21 8 7 41 41 H 1.07997 * 120.00460 * 180.02562 * 22 6 5 42 42 H 1.08001 * 120.00274 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0744 -1.1971 5 6 2.7237 3.3757 -1.1971 6 6 2.9545 4.0271 0.0001 7 6 3.4570 5.4479 0.0002 8 7 2.3144 6.3713 0.0007 9 6 1.5932 6.3226 -1.2889 10 6 1.0822 7.7680 -1.5112 11 6 2.2604 8.6068 -0.9497 12 8 3.2897 8.7517 -1.9302 13 6 1.7819 9.9560 -0.4789 14 1 1.8192 10.2058 0.5712 15 6 1.2966 10.8713 -1.3885 16 7 1.2509 10.5670 -2.6671 17 14 0.7041 12.5440 -0.8049 18 1 1.8376 13.5033 -0.8192 19 1 -0.3689 13.0320 -1.7081 20 1 0.1726 12.4264 0.5769 21 6 2.7557 7.7577 0.2399 22 6 2.7241 3.3755 1.1973 23 6 2.2627 2.0724 1.1972 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0726 1.5670 -2.1324 30 1 2.9034 3.8850 -2.1323 31 1 4.0628 5.6190 0.8899 32 1 4.0621 5.6193 -0.8900 33 1 2.2707 6.0320 -2.0918 34 1 0.7547 5.6288 -1.2288 35 1 0.1686 7.9504 -0.9454 36 1 0.9294 7.9700 -2.5713 37 1 3.0293 9.2773 -2.6991 38 1 0.9098 11.2112 -3.3071 39 1 2.3214 8.1303 1.1676 40 1 3.8435 7.7958 0.2983 41 1 2.9040 3.8845 2.1326 42 1 2.0831 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:27 Heat of formation + Delta-G solvation = -35.465766 kcal Electronic energy + Delta-G solvation = -21250.834282 eV Core-core repulsion = 18194.822602 eV Total energy + Delta-G solvation = -3056.011680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.55714 -38.15335 -35.20062 -33.83606 -32.06519 -30.88995 -30.76842 -28.68592 -27.99345 -25.55518 -24.11348 -22.73771 -22.50773 -20.53151 -19.95716 -19.42563 -17.12950 -16.11191 -15.57527 -15.35403 -14.93389 -14.88355 -14.11849 -14.06329 -13.79747 -13.67031 -13.35428 -13.14576 -12.93716 -12.38054 -12.12946 -11.87263 -11.69584 -11.55699 -11.29817 -11.25104 -11.14741 -10.91412 -10.79876 -10.61902 -10.47254 -10.42787 -10.26472 -9.87295 -9.26271 -8.74870 -8.61955 -8.39700 -8.07697 -7.60890 -6.20826 -4.27768 1.48180 1.57632 3.23305 3.30350 3.34023 3.86422 4.31236 4.72719 4.80386 4.84292 5.05420 5.10343 5.14691 5.19435 5.25691 5.44945 5.52191 5.62308 5.71795 5.75574 5.77334 5.90329 5.96440 6.05987 6.12586 6.17021 6.23951 6.25991 6.32182 6.44487 6.53456 6.61751 6.71424 6.86565 6.96567 7.09263 7.17341 7.43666 7.49249 7.69093 7.78666 7.84377 8.15233 8.73608 9.40134 9.52876 10.86453 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.003614 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.169325 B = 7746.851646 C = 7845.090620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.067 4.067 7 C 0.087 3.913 8 N -0.524 5.524 9 C 0.045 3.955 10 C -0.131 4.131 11 C 0.237 3.763 12 O -0.593 6.593 13 C -0.531 4.531 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.057 3.943 22 C -0.099 4.099 23 C -0.121 4.121 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.383 0.617 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.121 0.879 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -16.869 3.513 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.138 4.138 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.041 4.041 8 N -0.248 5.248 9 C -0.082 4.082 10 C -0.170 4.170 11 C 0.196 3.804 12 O -0.403 6.403 13 C -0.569 4.569 14 H 0.081 0.919 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.070 4.070 22 C -0.117 4.117 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.235 0.765 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.139 0.861 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.884 -17.306 4.178 17.825 hybrid contribution -0.203 1.575 -0.859 1.806 sum 0.681 -15.731 3.318 16.092 Atomic orbital electron populations 1.21750 0.94878 1.01360 1.02427 1.20500 0.96099 0.92948 1.02387 1.19809 1.00060 0.96108 0.93327 1.20930 1.00622 0.94965 0.97272 1.21092 0.99229 0.94572 0.97827 1.19874 0.98433 0.95415 0.93005 1.21221 0.92730 0.89000 1.01182 1.63720 1.22185 1.06390 1.32486 1.23059 0.96878 0.99164 0.89146 1.23168 1.00106 0.91954 1.01785 1.19708 0.83668 0.92359 0.84640 1.86067 1.42373 1.76512 1.35364 1.21617 1.41672 0.99257 0.94385 0.91938 1.25011 0.94522 0.98849 0.94883 1.69594 1.47247 1.35881 1.01298 0.86452 0.78421 0.83518 0.78769 1.20532 1.21114 1.19735 1.22858 0.98364 0.86296 0.99488 1.20996 0.98768 0.94222 0.97758 1.20948 1.00742 0.95053 0.97203 0.92686 0.92509 0.92506 0.91369 0.91363 0.86564 0.86353 0.90705 0.93896 0.94580 0.92256 0.91883 0.90972 0.76487 0.92308 0.90220 0.93516 0.86125 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.15 0.37 -0.90 16 2 C -0.08 -0.74 6.06 -27.89 -0.17 -0.91 16 3 C -0.09 -1.10 5.13 -104.63 -0.54 -1.63 16 4 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 5 C -0.11 -1.56 8.93 -39.58 -0.35 -1.91 16 6 C -0.07 -1.02 5.09 -104.62 -0.53 -1.55 16 7 C 0.09 1.47 4.72 -4.97 -0.02 1.45 16 8 N -0.52 -10.34 5.15 -232.69 -1.20 -11.54 16 9 C 0.04 0.91 5.60 -2.30 -0.01 0.90 16 10 C -0.13 -3.09 5.67 -24.59 -0.14 -3.23 16 11 C 0.24 5.92 0.85 -89.95 -0.08 5.84 16 12 O -0.59 -15.56 13.08 -35.23 -0.46 -16.02 16 13 C -0.53 -14.32 8.22 -34.44 -0.28 -14.60 16 14 H 0.06 1.67 7.53 -52.48 -0.40 1.28 16 15 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 16 N -0.90 -24.14 10.69 55.43 0.59 -23.55 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.06 1.26 6.21 -2.84 -0.02 1.24 16 22 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 23 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.12 1.68 7.49 -52.49 -0.39 1.28 16 31 H 0.07 1.18 7.97 -51.94 -0.41 0.76 16 32 H 0.04 0.76 7.79 -51.93 -0.40 0.36 16 33 H 0.04 0.73 6.99 -51.93 -0.36 0.36 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 36 H 0.07 1.79 7.76 -51.93 -0.40 1.38 16 37 H 0.38 10.28 6.98 45.56 0.32 10.60 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 39 H 0.08 1.75 7.63 -51.93 -0.40 1.35 16 40 H 0.05 1.01 7.48 -51.93 -0.39 0.63 16 41 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -27.68 337.47 -10.22 -37.90 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.19 Total: 11.48 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -3.02 Total: -19.09 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.61 Total: -35.09 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.46 Total: -16.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.68 -10.22 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.435 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds