Wall clock time and date at job start Mon Mar 30 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47330 * 2 1 4 4 C 1.38229 * 120.00230 * 270.27821 * 3 2 1 5 5 C 1.38238 * 120.00124 * 180.28369 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.45911 * 5 4 3 7 7 C 1.50703 * 120.00257 * 180.27927 * 6 5 4 8 8 N 1.46900 * 109.46725 * 89.99983 * 7 6 5 9 9 C 1.47846 * 111.00374 * 290.84573 * 8 7 6 10 10 C 1.54909 * 104.79528 * 213.63848 * 9 8 7 11 11 C 1.55142 * 101.65478 * 37.06870 * 10 9 8 12 12 O 1.42892 * 110.70341 * 82.72993 * 11 10 9 13 13 C 1.50699 * 110.85206 * 205.89219 * 11 10 9 14 14 H 1.08003 * 119.99450 * 113.69315 * 13 11 10 15 15 C 1.37867 * 120.00258 * 293.68610 * 13 11 10 16 16 N 1.31514 * 120.00167 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00197 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47224 * 89.99935 * 17 15 13 19 19 H 1.48501 * 109.47612 * 210.00133 * 17 15 13 20 20 H 1.48511 * 109.47012 * 330.00051 * 17 15 13 21 21 C 1.47443 * 110.99882 * 170.00243 * 8 7 6 22 22 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 23 23 C 1.38234 * 119.99755 * 90.00186 * 3 2 1 24 24 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47063 * 299.99607 * 1 2 3 26 26 H 1.09007 * 109.47367 * 59.99406 * 1 2 3 27 27 H 1.09007 * 109.46769 * 240.00134 * 2 1 3 28 28 H 1.08998 * 109.47623 * 120.00616 * 2 1 3 29 29 H 1.08004 * 120.00244 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.00519 * 179.74530 * 5 4 3 31 31 H 1.08988 * 109.47584 * 210.00457 * 7 6 5 32 32 H 1.09000 * 109.47013 * 330.00974 * 7 6 5 33 33 H 1.08998 * 110.37119 * 332.46588 * 9 8 7 34 34 H 1.08997 * 110.37140 * 94.81215 * 9 8 7 35 35 H 1.09005 * 110.98730 * 278.97811 * 10 9 8 36 36 H 1.08995 * 111.02285 * 155.18147 * 10 9 8 37 37 H 0.96705 * 113.99976 * 66.39670 * 12 11 10 38 38 H 0.97006 * 119.99922 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.89518 * 242.66726 * 21 8 7 40 40 H 1.09005 * 109.89084 * 3.69106 * 21 8 7 41 41 H 1.07997 * 120.00460 * 180.02562 * 22 6 5 42 42 H 1.08001 * 120.00274 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0744 -1.1971 5 6 2.7237 3.3757 -1.1971 6 6 2.9545 4.0271 0.0001 7 6 3.4570 5.4479 0.0002 8 7 2.3144 6.3713 0.0007 9 6 1.5932 6.3226 -1.2889 10 6 1.0822 7.7680 -1.5112 11 6 2.2604 8.6068 -0.9497 12 8 3.2897 8.7517 -1.9302 13 6 1.7819 9.9560 -0.4789 14 1 1.8192 10.2058 0.5712 15 6 1.2966 10.8713 -1.3885 16 7 1.2509 10.5670 -2.6671 17 14 0.7041 12.5440 -0.8049 18 1 1.8376 13.5033 -0.8192 19 1 -0.3689 13.0320 -1.7081 20 1 0.1726 12.4264 0.5769 21 6 2.7557 7.7577 0.2399 22 6 2.7241 3.3755 1.1973 23 6 2.2627 2.0724 1.1972 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0726 1.5670 -2.1324 30 1 2.9034 3.8850 -2.1323 31 1 4.0628 5.6190 0.8899 32 1 4.0621 5.6193 -0.8900 33 1 2.2707 6.0320 -2.0918 34 1 0.7547 5.6288 -1.2288 35 1 0.1686 7.9504 -0.9454 36 1 0.9294 7.9700 -2.5713 37 1 3.0293 9.2773 -2.6991 38 1 0.9098 11.2112 -3.3071 39 1 2.3214 8.1303 1.1676 40 1 3.8435 7.7958 0.2983 41 1 2.9040 3.8845 2.1326 42 1 2.0831 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:27 Heat of formation + Delta-G solvation = -51.849458 kcal Electronic energy + Delta-G solvation = -21251.544732 eV Core-core repulsion = 18194.822602 eV Total energy + Delta-G solvation = -3056.722130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75458 -39.72119 -36.79655 -35.01748 -34.13416 -32.25015 -31.78521 -30.12698 -29.75207 -27.04703 -25.73804 -23.78575 -23.52469 -21.89502 -21.33090 -21.24013 -19.15694 -17.32063 -16.94282 -16.81801 -16.49337 -16.23931 -15.87103 -15.57509 -15.07696 -14.57994 -14.54129 -14.32430 -14.10105 -13.86126 -13.71660 -13.46907 -13.21164 -13.06190 -12.79186 -12.60203 -12.51968 -12.37895 -12.27768 -12.13628 -12.01994 -11.87513 -11.60176 -11.51051 -11.16771 -10.63905 -10.11977 -9.75567 -9.47555 -9.19302 -8.23191 -6.38111 0.44970 0.56724 1.40414 1.42197 1.52072 2.38026 2.78517 3.01155 3.32100 3.81325 3.87979 3.92311 4.01959 4.16777 4.19551 4.30039 4.36519 4.44476 4.52666 4.56511 4.59865 4.63084 4.71483 4.78854 4.80178 4.83192 5.09045 5.10846 5.11500 5.19848 5.24603 5.28102 5.42598 5.46545 5.51587 5.56768 5.77211 5.77690 5.79455 5.95688 6.15278 6.18915 6.22206 6.66323 7.32637 7.42246 8.82402 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.003614 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.169325 B = 7746.851646 C = 7845.090620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.090 4.090 4 C -0.125 4.125 5 C -0.122 4.122 6 C -0.087 4.087 7 C 0.090 3.910 8 N -0.521 5.521 9 C 0.060 3.940 10 C -0.125 4.125 11 C 0.221 3.779 12 O -0.599 6.599 13 C -0.558 4.558 14 H 0.057 0.943 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 0.962 3.038 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.270 1.270 21 C 0.064 3.936 22 C -0.107 4.107 23 C -0.123 4.123 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.377 0.623 38 H 0.270 0.730 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.128 0.872 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -18.519 4.376 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.090 4.090 4 C -0.143 4.143 5 C -0.141 4.141 6 C -0.088 4.088 7 C -0.037 4.037 8 N -0.245 5.245 9 C -0.067 4.067 10 C -0.163 4.163 11 C 0.181 3.819 12 O -0.409 6.409 13 C -0.596 4.596 14 H 0.076 0.924 15 C -0.173 4.173 16 N -0.556 5.556 17 Si 0.788 3.212 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.064 4.064 22 C -0.125 4.125 23 C -0.141 4.141 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.146 0.854 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.429 -18.973 5.045 19.637 hybrid contribution -0.054 2.015 -1.137 2.314 sum 0.375 -16.958 3.908 17.407 Atomic orbital electron populations 1.21743 0.94517 1.02362 1.01703 1.20565 0.96254 0.91187 1.03748 1.20195 0.98589 0.97411 0.92807 1.21180 1.00108 0.94365 0.98639 1.21151 1.00011 0.95553 0.97349 1.19748 1.00473 0.94498 0.94074 1.21221 0.91731 0.89681 1.01087 1.63734 1.23404 1.05468 1.31895 1.22897 0.97204 0.97128 0.89515 1.22983 0.99202 0.93985 1.00178 1.19950 0.84067 0.92559 0.85298 1.86061 1.43088 1.76362 1.35389 1.21892 1.42659 1.00662 0.94394 0.92445 1.25723 0.94491 1.02018 0.95037 1.69677 1.47177 1.36809 1.01950 0.85492 0.77952 0.79410 0.78365 1.20221 1.20572 1.19436 1.22728 0.98207 0.87265 0.98182 1.21155 0.98861 0.95060 0.97465 1.21254 0.99842 0.94491 0.98522 0.90880 0.93088 0.93389 0.90229 0.89867 0.84755 0.86994 0.89618 0.95137 0.94619 0.90992 0.93132 0.92806 0.77191 0.92095 0.90333 0.93549 0.85437 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 71.98 0.71 -1.40 16 2 C -0.08 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 4 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 5 C -0.12 -3.41 8.93 22.27 0.20 -3.21 16 6 C -0.09 -2.59 5.09 -19.87 -0.10 -2.69 16 7 C 0.09 3.04 4.72 85.56 0.40 3.44 16 8 N -0.52 -20.48 5.15 -890.10 -4.59 -25.06 16 9 C 0.06 2.44 5.60 86.77 0.49 2.93 16 10 C -0.12 -5.97 5.67 31.98 0.18 -5.79 16 11 C 0.22 11.27 0.85 -10.36 -0.01 11.26 16 12 O -0.60 -32.16 13.08 -148.98 -1.95 -34.11 16 13 C -0.56 -30.49 8.22 25.60 0.21 -30.28 16 14 H 0.06 3.11 7.53 -2.91 -0.02 3.09 16 15 C 0.03 1.46 5.28 84.65 0.45 1.90 16 16 N -0.92 -49.66 10.69 21.44 0.23 -49.44 16 17 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 C 0.06 2.83 6.21 86.65 0.54 3.37 16 22 C -0.11 -2.78 9.70 22.27 0.22 -2.56 16 23 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.08 1.03 8.09 -2.38 -0.02 1.01 16 28 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 29 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.11 3.18 7.49 -2.91 -0.02 3.16 16 31 H 0.09 2.65 7.97 -2.39 -0.02 2.63 16 32 H 0.03 1.09 7.79 -2.39 -0.02 1.08 16 33 H 0.04 1.45 6.99 -2.39 -0.02 1.43 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.05 2.50 8.05 -2.38 -0.02 2.48 16 36 H 0.05 2.73 7.76 -2.39 -0.02 2.71 16 37 H 0.38 20.82 6.98 -74.05 -0.52 20.30 16 38 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 39 H 0.08 3.47 7.63 -2.39 -0.02 3.46 16 40 H 0.05 2.03 7.48 -2.38 -0.02 2.01 16 41 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 42 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -58.55 337.47 -0.01 -58.56 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.47 Total: 36.66 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.79 Total: -31.25 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -4.36 Total: -74.50 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.95 Total: -34.11 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -58.55 -0.01 -58.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.713 kcal (2) G-P(sol) polarization free energy of solvation -58.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds