Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50687 * 109.47298 * 2 1 4 4 C 1.38243 * 120.00113 * 90.00170 * 3 2 1 5 5 C 1.38228 * 120.00148 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00427 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00474 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47003 * 89.99893 * 7 6 5 9 9 C 1.47445 * 111.00124 * 290.13079 * 8 7 6 10 10 C 1.54322 * 107.36865 * 236.66052 * 9 8 7 11 11 C 1.55393 * 102.90044 * 337.89269 * 10 9 8 12 12 O 1.42897 * 110.90366 * 277.37916 * 11 10 9 13 13 C 1.50699 * 111.02866 * 153.63239 * 11 10 9 14 14 H 1.07993 * 120.00500 * 242.35775 * 13 11 10 15 15 C 1.37877 * 119.99608 * 62.35486 * 13 11 10 16 16 N 1.31514 * 120.00209 * 4.92938 * 15 13 11 17 17 Si 1.86798 * 120.00260 * 184.92391 * 15 13 11 18 18 H 1.48506 * 109.47129 * 94.99828 * 17 15 13 19 19 H 1.48498 * 109.47455 * 214.99931 * 17 15 13 20 20 H 1.48506 * 109.47007 * 335.00428 * 17 15 13 21 21 C 1.47845 * 111.00074 * 169.28704 * 8 7 6 22 22 C 1.38244 * 119.99555 * 0.27506 * 6 5 4 23 23 C 1.38233 * 119.99999 * 359.53782 * 22 6 5 24 24 H 1.09008 * 109.47508 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47262 * 299.99753 * 1 2 3 26 26 H 1.09000 * 109.47194 * 59.99668 * 1 2 3 27 27 H 1.09005 * 109.46608 * 239.99597 * 2 1 3 28 28 H 1.09003 * 109.46709 * 120.00227 * 2 1 3 29 29 H 1.08000 * 119.99338 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.99697 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47141 * 329.99968 * 7 6 5 32 32 H 1.08997 * 109.47462 * 209.99932 * 7 6 5 33 33 H 1.08996 * 109.88754 * 356.14192 * 9 8 7 34 34 H 1.08996 * 109.88845 * 117.17498 * 9 8 7 35 35 H 1.09004 * 110.70198 * 96.17743 * 10 9 8 36 36 H 1.08995 * 110.70285 * 219.41081 * 10 9 8 37 37 H 0.96697 * 114.00038 * 292.31879 * 12 11 10 38 38 H 0.97001 * 120.00744 * 180.02562 * 16 15 13 39 39 H 1.09009 * 110.37141 * 265.19326 * 21 8 7 40 40 H 1.08998 * 110.37293 * 27.53325 * 21 8 7 41 41 H 1.07998 * 119.99923 * 179.72965 * 22 6 5 42 42 H 1.08000 * 120.00045 * 180.23081 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3754 1.1972 6 6 2.9555 4.0268 0.0001 7 6 3.4590 5.4472 0.0001 8 7 4.9280 5.4460 0.0007 9 6 5.4555 4.9720 1.2934 10 6 6.3770 6.0784 1.8486 11 6 6.7647 6.8787 0.5742 12 8 7.8468 6.2485 -0.1140 13 6 7.1041 8.3069 0.9150 14 1 6.5110 9.1140 0.5113 15 6 8.1719 8.5831 1.7424 16 7 8.9526 7.6088 2.1559 17 14 8.5100 10.3410 2.2759 18 1 7.8785 10.5875 3.5972 19 1 9.9759 10.5534 2.3806 20 1 7.9440 11.2799 1.2740 21 6 5.4591 6.8017 -0.2558 22 6 2.7201 3.3768 -1.1971 23 6 2.2625 2.0725 -1.1971 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0824 1.5633 2.1325 30 1 2.9037 3.8846 2.1325 31 1 3.0957 5.9614 0.8899 32 1 3.0965 5.9612 -0.8900 33 1 4.6332 4.7922 1.9860 34 1 6.0247 4.0540 1.1475 35 1 5.8372 6.7125 2.5520 36 1 7.2600 5.6449 2.3180 37 1 8.6855 6.2716 0.3667 38 1 9.7036 7.8030 2.7383 39 1 5.6755 6.9300 -1.3165 40 1 4.7496 7.5572 0.0817 41 1 2.8968 3.8872 -2.1324 42 1 2.0822 1.5635 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = -33.816723 kcal Electronic energy + Delta-G solvation = -21180.441906 eV Core-core repulsion = 18124.501734 eV Total energy + Delta-G solvation = -3055.940172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57656 -38.11454 -35.20676 -33.82561 -32.08422 -30.86670 -30.76445 -28.68163 -27.97714 -25.62979 -24.14455 -22.79784 -22.53061 -20.55726 -19.80846 -19.49213 -17.06061 -15.99330 -15.68452 -15.20328 -15.02987 -14.89101 -14.54595 -13.95261 -13.75061 -13.71127 -13.24413 -13.10392 -12.74931 -12.44201 -12.35593 -11.91184 -11.71033 -11.48192 -11.35320 -11.25593 -11.07021 -11.04295 -10.78994 -10.74575 -10.51773 -10.42730 -10.21067 -9.83067 -9.21317 -8.75208 -8.58227 -8.39439 -8.03240 -7.56048 -6.22063 -4.29880 1.47576 1.57092 3.20809 3.28828 3.32352 3.85740 4.29122 4.70649 4.79389 4.85409 5.04955 5.08144 5.13030 5.16330 5.23598 5.42366 5.48287 5.60716 5.71096 5.72368 5.74980 5.88245 5.90290 6.00601 6.03302 6.11562 6.18495 6.22437 6.25694 6.50225 6.56770 6.69632 6.71109 6.85239 6.89897 7.09190 7.16462 7.44919 7.49448 7.66720 7.79041 7.84017 8.16082 8.72777 9.38817 9.61081 10.85004 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044837 B = 0.003475 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.330837 B = 8054.974979 C = 8134.402381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.120 4.120 5 C -0.110 4.110 6 C -0.067 4.067 7 C 0.085 3.915 8 N -0.520 5.520 9 C 0.046 3.954 10 C -0.146 4.146 11 C 0.253 3.747 12 O -0.581 6.581 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.058 3.942 22 C -0.098 4.098 23 C -0.121 4.121 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.380 0.620 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.121 0.879 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 -11.005 -2.013 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.138 4.138 5 C -0.129 4.129 6 C -0.067 4.067 7 C -0.043 4.043 8 N -0.244 5.244 9 C -0.082 4.082 10 C -0.185 4.185 11 C 0.212 3.788 12 O -0.389 6.389 13 C -0.576 4.576 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.069 4.069 22 C -0.116 4.116 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.230 0.770 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.139 0.861 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.928 -11.471 -2.754 18.252 hybrid contribution 0.444 1.591 1.557 2.270 sum -13.484 -9.879 -1.197 16.758 Atomic orbital electron populations 1.21746 0.94999 1.01378 1.02171 1.20506 0.95935 0.93016 1.02596 1.19805 1.00116 0.96002 0.93320 1.20924 1.00690 0.94897 0.97275 1.21081 0.99222 0.94864 0.97704 1.19849 0.97499 0.96336 0.93032 1.21204 0.90095 0.92061 1.00950 1.63645 1.04295 1.24669 1.31823 1.22844 0.97265 0.99233 0.88825 1.23299 0.98682 0.96310 1.00243 1.19565 0.83501 0.89967 0.85770 1.86116 1.21822 1.80988 1.50004 1.21579 1.14241 0.92373 1.29372 0.92048 1.25011 0.95343 0.97696 0.95088 1.69660 1.16882 1.31757 1.35108 0.86463 0.77541 0.84385 0.78917 1.20630 1.21024 1.19731 1.23020 0.96115 0.87028 1.00753 1.21000 0.98322 0.94523 0.97775 1.20954 1.00723 0.94958 0.97230 0.92662 0.92631 0.92621 0.91250 0.91277 0.86569 0.86374 0.94315 0.90586 0.94437 0.91900 0.92773 0.90727 0.76960 0.92293 0.91066 0.93563 0.86088 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.76 6.06 -27.89 -0.17 -0.93 16 3 C -0.09 -1.09 5.13 -104.63 -0.54 -1.63 16 4 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 5 C -0.11 -1.55 8.74 -39.59 -0.35 -1.90 16 6 C -0.07 -1.01 5.11 -104.62 -0.53 -1.54 16 7 C 0.08 1.39 4.75 -4.98 -0.02 1.37 16 8 N -0.52 -10.38 5.15 -232.69 -1.20 -11.58 16 9 C 0.05 0.93 6.25 -2.83 -0.02 0.91 16 10 C -0.15 -3.42 5.51 -24.77 -0.14 -3.56 16 11 C 0.25 6.36 0.89 -89.49 -0.08 6.28 16 12 O -0.58 -15.61 13.18 -35.23 -0.46 -16.07 16 13 C -0.54 -14.44 8.26 -34.44 -0.28 -14.73 16 14 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 15 C 0.07 1.88 5.26 -17.82 -0.09 1.79 16 16 N -0.89 -24.01 10.76 55.43 0.60 -23.41 16 17 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.06 1.28 5.86 -2.30 -0.01 1.26 16 22 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 23 C -0.12 -1.49 9.70 -39.58 -0.38 -1.88 16 24 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.60 6.92 -52.49 -0.36 1.24 16 31 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 32 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 33 H 0.04 0.68 5.50 -51.93 -0.29 0.40 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 36 H 0.07 1.86 7.71 -51.93 -0.40 1.46 16 37 H 0.38 10.34 7.18 45.56 0.33 10.67 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.07 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 41 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -28.08 336.90 -10.16 -38.24 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.13 Total: 11.11 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -3.02 Total: -18.97 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: -0.60 Total: -34.99 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.46 Total: -16.07 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.08 -10.16 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.422 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds