Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50687 * 109.47298 * 2 1 4 4 C 1.38243 * 120.00113 * 90.00170 * 3 2 1 5 5 C 1.38228 * 120.00148 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00427 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00474 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47003 * 89.99893 * 7 6 5 9 9 C 1.47445 * 111.00124 * 290.13079 * 8 7 6 10 10 C 1.54322 * 107.36865 * 236.66052 * 9 8 7 11 11 C 1.55393 * 102.90044 * 337.89269 * 10 9 8 12 12 O 1.42897 * 110.90366 * 277.37916 * 11 10 9 13 13 C 1.50699 * 111.02866 * 153.63239 * 11 10 9 14 14 H 1.07993 * 120.00500 * 242.35775 * 13 11 10 15 15 C 1.37877 * 119.99608 * 62.35486 * 13 11 10 16 16 N 1.31514 * 120.00209 * 4.92938 * 15 13 11 17 17 Si 1.86798 * 120.00260 * 184.92391 * 15 13 11 18 18 H 1.48506 * 109.47129 * 94.99828 * 17 15 13 19 19 H 1.48498 * 109.47455 * 214.99931 * 17 15 13 20 20 H 1.48506 * 109.47007 * 335.00428 * 17 15 13 21 21 C 1.47845 * 111.00074 * 169.28704 * 8 7 6 22 22 C 1.38244 * 119.99555 * 0.27506 * 6 5 4 23 23 C 1.38233 * 119.99999 * 359.53782 * 22 6 5 24 24 H 1.09008 * 109.47508 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47262 * 299.99753 * 1 2 3 26 26 H 1.09000 * 109.47194 * 59.99668 * 1 2 3 27 27 H 1.09005 * 109.46608 * 239.99597 * 2 1 3 28 28 H 1.09003 * 109.46709 * 120.00227 * 2 1 3 29 29 H 1.08000 * 119.99338 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.99697 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47141 * 329.99968 * 7 6 5 32 32 H 1.08997 * 109.47462 * 209.99932 * 7 6 5 33 33 H 1.08996 * 109.88754 * 356.14192 * 9 8 7 34 34 H 1.08996 * 109.88845 * 117.17498 * 9 8 7 35 35 H 1.09004 * 110.70198 * 96.17743 * 10 9 8 36 36 H 1.08995 * 110.70285 * 219.41081 * 10 9 8 37 37 H 0.96697 * 114.00038 * 292.31879 * 12 11 10 38 38 H 0.97001 * 120.00744 * 180.02562 * 16 15 13 39 39 H 1.09009 * 110.37141 * 265.19326 * 21 8 7 40 40 H 1.08998 * 110.37293 * 27.53325 * 21 8 7 41 41 H 1.07998 * 119.99923 * 179.72965 * 22 6 5 42 42 H 1.08000 * 120.00045 * 180.23081 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3754 1.1972 6 6 2.9555 4.0268 0.0001 7 6 3.4590 5.4472 0.0001 8 7 4.9280 5.4460 0.0007 9 6 5.4555 4.9720 1.2934 10 6 6.3770 6.0784 1.8486 11 6 6.7647 6.8787 0.5742 12 8 7.8468 6.2485 -0.1140 13 6 7.1041 8.3069 0.9150 14 1 6.5110 9.1140 0.5113 15 6 8.1719 8.5831 1.7424 16 7 8.9526 7.6088 2.1559 17 14 8.5100 10.3410 2.2759 18 1 7.8785 10.5875 3.5972 19 1 9.9759 10.5534 2.3806 20 1 7.9440 11.2799 1.2740 21 6 5.4591 6.8017 -0.2558 22 6 2.7201 3.3768 -1.1971 23 6 2.2625 2.0725 -1.1971 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0824 1.5633 2.1325 30 1 2.9037 3.8846 2.1325 31 1 3.0957 5.9614 0.8899 32 1 3.0965 5.9612 -0.8900 33 1 4.6332 4.7922 1.9860 34 1 6.0247 4.0540 1.1475 35 1 5.8372 6.7125 2.5520 36 1 7.2600 5.6449 2.3180 37 1 8.6855 6.2716 0.3667 38 1 9.7036 7.8030 2.7383 39 1 5.6755 6.9300 -1.3165 40 1 4.7496 7.5572 0.0817 41 1 2.8968 3.8872 -2.1324 42 1 2.0822 1.5635 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = -50.654238 kcal Electronic energy + Delta-G solvation = -21181.172035 eV Core-core repulsion = 18124.501734 eV Total energy + Delta-G solvation = -3056.670301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74969 -39.67339 -36.79689 -34.99822 -34.15345 -32.18162 -31.79441 -30.11187 -29.73599 -27.09830 -25.75294 -23.82455 -23.53781 -21.78965 -21.40959 -21.16753 -19.06301 -17.10478 -16.99864 -16.91241 -16.53505 -16.14191 -16.09022 -15.69417 -14.74889 -14.59934 -14.40617 -14.37447 -14.19802 -13.86466 -13.74736 -13.45984 -13.20259 -13.10355 -12.77848 -12.62064 -12.55559 -12.36775 -12.27561 -12.20766 -12.05421 -11.71941 -11.58434 -11.52335 -11.12943 -10.58973 -10.08770 -9.75072 -9.43762 -9.13056 -8.23699 -6.39514 0.45437 0.56768 1.39188 1.41681 1.51675 2.36929 2.79494 3.00970 3.35713 3.80235 3.90480 3.97750 4.04955 4.07431 4.18626 4.21070 4.33211 4.40242 4.52222 4.54758 4.62091 4.66783 4.76111 4.78379 4.80137 4.89406 5.04809 5.10341 5.11981 5.19816 5.24902 5.27840 5.42036 5.48040 5.51463 5.56726 5.75881 5.77334 5.79895 5.96303 6.16343 6.21462 6.27728 6.66796 7.32113 7.49091 8.81986 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044837 B = 0.003475 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.330837 B = 8054.974979 C = 8134.402381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.088 4.088 7 C 0.087 3.913 8 N -0.526 5.526 9 C 0.058 3.942 10 C -0.137 4.137 11 C 0.234 3.766 12 O -0.591 6.591 13 C -0.562 4.562 14 H 0.056 0.944 15 C 0.029 3.971 16 N -0.912 5.912 17 Si 0.962 3.038 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.271 1.271 21 C 0.066 3.934 22 C -0.109 4.109 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.374 0.626 38 H 0.270 0.730 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.192 -11.882 -1.923 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.040 4.040 8 N -0.250 5.250 9 C -0.069 4.069 10 C -0.177 4.177 11 C 0.194 3.806 12 O -0.399 6.399 13 C -0.600 4.600 14 H 0.075 0.925 15 C -0.171 4.171 16 N -0.551 5.551 17 Si 0.787 3.213 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.062 4.062 22 C -0.128 4.128 23 C -0.143 4.143 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.137 0.863 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.223 0.777 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.363 -12.357 -2.669 19.896 hybrid contribution 0.857 1.792 1.507 2.493 sum -14.506 -10.565 -1.162 17.983 Atomic orbital electron populations 1.21726 0.94028 1.02398 1.01885 1.20573 0.96666 0.91222 1.03523 1.20188 0.98751 0.97271 0.92861 1.21196 1.00175 0.94417 0.98557 1.21189 0.99751 0.95689 0.97401 1.19780 0.99279 0.95779 0.93994 1.21238 0.87590 0.93616 1.01551 1.63581 1.06798 1.23181 1.31475 1.22681 0.97269 0.97521 0.89441 1.23113 0.98354 0.96861 0.99345 1.19854 0.84068 0.89571 0.87122 1.86107 1.22030 1.81291 1.50495 1.21832 1.14892 0.93170 1.30142 0.92535 1.25728 0.95066 1.01395 0.94948 1.69748 1.16985 1.33313 1.35096 0.85493 0.77385 0.79900 0.78516 1.20029 1.20620 1.19558 1.22866 0.94948 0.88549 0.99803 1.21160 0.98646 0.95370 0.97586 1.21240 1.00063 0.94459 0.98516 0.91031 0.92995 0.92859 0.90293 0.90448 0.84649 0.86328 0.94064 0.89582 0.92134 0.92803 0.93470 0.92872 0.77668 0.92087 0.91750 0.92830 0.85727 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.16 16 2 C -0.08 -1.26 6.06 29.84 0.18 -1.08 16 3 C -0.09 -1.93 5.13 -19.87 -0.10 -2.04 16 4 C -0.13 -2.90 9.70 22.27 0.22 -2.68 16 5 C -0.12 -3.27 8.74 22.27 0.19 -3.08 16 6 C -0.09 -2.56 5.11 -19.86 -0.10 -2.66 16 7 C 0.09 2.79 4.75 85.56 0.41 3.20 16 8 N -0.53 -20.81 5.15 -890.09 -4.58 -25.39 16 9 C 0.06 2.37 6.25 86.65 0.54 2.91 16 10 C -0.14 -6.54 5.51 31.87 0.18 -6.36 16 11 C 0.23 11.97 0.89 -10.06 -0.01 11.96 16 12 O -0.59 -32.50 13.18 -148.98 -1.96 -34.46 16 13 C -0.56 -30.56 8.26 25.60 0.21 -30.35 16 14 H 0.06 3.04 7.79 -2.91 -0.02 3.02 16 15 C 0.03 1.56 5.26 84.65 0.44 2.00 16 16 N -0.91 -49.46 10.76 21.45 0.23 -49.23 16 17 Si 0.96 42.27 29.54 68.60 2.03 44.29 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.07 2.91 5.86 86.77 0.51 3.42 16 22 C -0.11 -2.90 9.70 22.27 0.22 -2.68 16 23 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 24 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 1.08 8.09 -2.38 -0.02 1.06 16 28 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 29 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.12 3.08 6.92 -2.91 -0.02 3.06 16 31 H 0.04 1.29 7.90 -2.39 -0.02 1.27 16 32 H 0.09 2.53 8.01 -2.39 -0.02 2.52 16 33 H 0.06 2.15 5.50 -2.39 -0.01 2.14 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 2.25 8.04 -2.39 -0.02 2.23 16 36 H 0.05 2.71 7.71 -2.39 -0.02 2.69 16 37 H 0.37 20.98 7.18 -74.06 -0.53 20.45 16 38 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 39 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 40 H 0.05 2.26 7.70 -2.39 -0.02 2.24 16 41 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -59.38 336.90 -0.01 -59.40 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.46 Total: 36.61 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 3.81 Total: -31.22 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -4.35 Total: -74.62 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -1.96 Total: -34.46 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -59.38 -0.01 -59.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.743 kcal (2) G-P(sol) polarization free energy of solvation -59.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds