Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50708 * 109.46775 * 2 1 4 4 C 1.38254 * 119.99823 * 270.02321 * 3 2 1 5 5 C 1.38216 * 119.99725 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.38208 * 119.99920 * 359.73680 * 6 5 4 8 8 C 1.50698 * 120.00309 * 180.28024 * 7 6 5 9 9 N 1.46904 * 109.47140 * 270.24051 * 8 7 6 10 10 C 1.47898 * 111.00442 * 69.86870 * 9 8 7 11 11 C 1.53986 * 107.05992 * 214.15826 * 10 9 8 12 12 C 1.54593 * 105.14043 * 1.22294 * 11 10 9 13 13 O 1.42898 * 110.72716 * 263.41812 * 12 11 10 14 14 C 1.50709 * 110.72252 * 140.31804 * 12 11 10 15 15 H 1.07997 * 119.99604 * 241.45312 * 14 12 11 16 16 C 1.37873 * 120.00166 * 61.45257 * 14 12 11 17 17 N 1.31522 * 119.99910 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00251 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46631 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47171 * 119.99839 * 18 16 14 21 21 H 1.48503 * 109.47222 * 240.00455 * 18 16 14 22 22 C 1.48539 * 110.99701 * 312.47161 * 9 8 7 23 23 C 1.38212 * 119.99857 * 90.00725 * 3 2 1 24 24 H 1.08998 * 109.46599 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46647 * 299.99691 * 1 2 3 26 26 H 1.08991 * 109.47157 * 59.99485 * 1 2 3 27 27 H 1.09001 * 109.46647 * 240.00308 * 2 1 3 28 28 H 1.08992 * 109.47295 * 119.99979 * 2 1 3 29 29 H 1.07997 * 120.00472 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99666 * 180.02562 * 5 4 3 31 31 H 1.07999 * 120.00076 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47001 * 30.23537 * 8 7 6 33 33 H 1.08993 * 109.47431 * 150.24031 * 8 7 6 34 34 H 1.08996 * 109.91640 * 333.51297 * 10 9 8 35 35 H 1.09005 * 109.91734 * 94.80203 * 10 9 8 36 36 H 1.09002 * 110.31026 * 120.14291 * 11 10 9 37 37 H 1.09003 * 110.30660 * 242.20780 * 11 10 9 38 38 H 0.96698 * 114.00542 * 298.54988 * 13 12 11 39 39 H 0.96999 * 119.99407 * 179.97438 * 17 16 14 40 40 H 1.09000 * 110.66768 * 278.15710 * 22 9 8 41 41 H 1.08998 * 110.66307 * 41.29043 * 22 9 8 42 42 H 1.08002 * 119.99812 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0728 -1.1973 5 6 2.7224 3.3761 -1.1973 6 6 2.9532 4.0277 0.0000 7 6 2.7187 3.3777 1.1969 8 6 2.9643 4.0899 2.5020 9 7 4.3519 3.8654 2.9289 10 6 5.3001 4.5801 2.0472 11 6 6.5660 3.7094 1.9449 12 6 6.2615 2.4531 2.7928 13 8 6.8013 2.5883 4.1090 14 6 6.7987 1.2146 2.1230 15 1 6.1236 0.4267 1.8236 16 6 8.1521 1.0875 1.8923 17 7 8.9743 2.0469 2.2573 18 14 8.8179 -0.4473 1.0613 19 1 7.6953 -1.3689 0.7515 20 1 9.5086 -0.0686 -0.1975 21 1 9.7787 -1.1244 1.9689 22 6 4.7128 2.4279 2.8311 23 6 2.2628 2.0724 1.1970 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0816 1.5640 -2.1326 30 1 2.9016 3.8855 -2.1327 31 1 3.3124 5.0462 0.0000 32 1 2.7930 5.1584 2.3707 33 1 2.2838 3.7034 3.2606 34 1 4.8600 4.7130 1.0589 35 1 5.5499 5.5495 2.4787 36 1 6.7504 3.4302 0.9075 37 1 7.4256 4.2426 2.3510 38 1 7.7632 2.6851 4.1317 39 1 9.9265 1.9572 2.0953 40 1 4.3584 1.8818 3.7053 41 1 4.3125 1.9922 1.9156 42 1 2.0825 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -28.470071 kcal Electronic energy + Delta-G solvation = -22145.273064 eV Core-core repulsion = 19089.564740 eV Total energy + Delta-G solvation = -3055.708324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85874 -37.87512 -35.10461 -33.76200 -32.05913 -31.56008 -29.56840 -28.84603 -27.88848 -25.58479 -24.07233 -23.58664 -21.84618 -20.54149 -19.72638 -19.18694 -16.98468 -16.31834 -15.51387 -15.28448 -14.92864 -14.69258 -14.56603 -13.94247 -13.74312 -13.50192 -13.18373 -13.10326 -12.80081 -12.40663 -11.89856 -11.88440 -11.70890 -11.45091 -11.25566 -11.14537 -10.99955 -10.92376 -10.70612 -10.59176 -10.55941 -10.37543 -10.26685 -9.72696 -9.08449 -8.54436 -8.48475 -8.41041 -8.02669 -7.64278 -6.15819 -4.23064 1.57040 1.61837 3.23082 3.31589 3.35971 3.95592 4.33535 4.78470 4.83045 4.96222 5.08532 5.13692 5.23984 5.30184 5.36883 5.45316 5.55353 5.68209 5.76368 5.81748 5.90427 5.92050 5.99995 6.09835 6.12026 6.16204 6.26988 6.30986 6.32104 6.57306 6.65509 6.69619 6.78081 6.83919 6.97761 7.13006 7.23710 7.47109 7.57686 7.62026 7.76020 7.87982 8.25834 8.79491 9.45393 9.61712 10.91332 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.006623 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.028853 B = 4226.943552 C = 5126.527909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.106 4.106 8 C 0.080 3.920 9 N -0.503 5.503 10 C 0.026 3.974 11 C -0.126 4.126 12 C 0.256 3.744 13 O -0.581 6.581 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.070 3.930 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.044 3.956 23 C -0.100 4.100 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.376 0.624 39 H 0.265 0.735 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.204 1.512 -5.576 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.133 4.133 7 C -0.108 4.108 8 C -0.048 4.048 9 N -0.224 5.224 10 C -0.102 4.102 11 C -0.165 4.165 12 C 0.216 3.784 13 O -0.389 6.389 14 C -0.570 4.570 15 H 0.077 0.923 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.083 4.083 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.612 1.719 -4.840 14.548 hybrid contribution 1.124 -0.970 -1.649 2.219 sum -12.488 0.749 -6.489 14.093 Atomic orbital electron populations 1.21731 0.94994 1.01395 1.01990 1.20539 0.95827 0.92947 1.03027 1.19823 0.99288 0.95998 0.93184 1.20923 1.00826 0.94969 0.97251 1.21048 0.99820 0.95074 0.97769 1.21022 1.00194 0.99941 0.92120 1.20642 0.98291 0.95253 0.96645 1.21412 0.92775 0.99252 0.91410 1.65171 1.00092 1.09570 1.47596 1.23046 0.94633 0.98102 0.94370 1.22880 0.94789 0.97513 1.01323 1.19337 0.87328 0.91243 0.80501 1.86138 1.26659 1.96222 1.29888 1.21633 0.92687 1.03942 1.38773 0.92260 1.24985 0.96909 0.96395 0.94865 1.69751 1.03673 1.32354 1.47701 0.86483 0.78966 0.83131 0.79103 1.19704 1.20974 1.20799 1.23427 0.97435 0.87348 1.00133 1.20916 0.99141 0.94268 0.97510 0.92617 0.92610 0.92799 0.91185 0.90847 0.86643 0.86490 0.86413 0.90758 0.90393 0.94319 0.92087 0.92336 0.91723 0.77483 0.92526 0.91442 0.92019 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.90 37.16 0.37 -1.05 16 2 C -0.09 -1.02 6.06 -27.88 -0.17 -1.19 16 3 C -0.08 -1.18 5.13 -104.62 -0.54 -1.72 16 4 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 5 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 6 C -0.11 -1.71 8.19 -39.59 -0.32 -2.04 16 7 C -0.11 -1.68 3.96 -104.63 -0.41 -2.10 16 8 C 0.08 1.28 5.69 -4.97 -0.03 1.25 16 9 N -0.50 -10.03 5.54 -231.90 -1.28 -11.31 16 10 C 0.03 0.53 6.46 -2.76 -0.02 0.51 16 11 C -0.13 -3.02 5.26 -25.38 -0.13 -3.15 16 12 C 0.26 6.55 0.95 -89.91 -0.09 6.46 16 13 O -0.58 -15.74 13.10 -35.23 -0.46 -16.20 16 14 C -0.53 -14.59 8.14 -34.44 -0.28 -14.87 16 15 H 0.06 1.63 7.78 -52.49 -0.41 1.23 16 16 C 0.07 1.90 5.28 -17.82 -0.09 1.81 16 17 N -0.90 -24.40 11.00 55.43 0.61 -23.79 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.04 0.97 5.20 -1.90 -0.01 0.96 16 23 C -0.10 -1.54 7.15 -39.58 -0.28 -1.82 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.62 7.15 -52.49 -0.38 1.25 16 32 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 33 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.04 0.72 4.84 -51.93 -0.25 0.46 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.48 7.84 -51.93 -0.41 1.07 16 37 H 0.06 1.62 7.99 -51.93 -0.41 1.20 16 38 H 0.38 10.24 7.46 45.56 0.34 10.58 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.06 1.36 4.75 -51.93 -0.25 1.11 16 42 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -28.80 330.90 -9.92 -38.72 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -5.96 Total: 12.60 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.79 Total: -21.05 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.67 Total: -35.10 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.46 Total: -16.20 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.80 -9.92 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.251 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds