Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50708 * 109.46775 * 2 1 4 4 C 1.38254 * 119.99823 * 270.02321 * 3 2 1 5 5 C 1.38216 * 119.99725 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.38208 * 119.99920 * 359.73680 * 6 5 4 8 8 C 1.50698 * 120.00309 * 180.28024 * 7 6 5 9 9 N 1.46904 * 109.47140 * 270.24051 * 8 7 6 10 10 C 1.47898 * 111.00442 * 69.86870 * 9 8 7 11 11 C 1.53986 * 107.05992 * 214.15826 * 10 9 8 12 12 C 1.54593 * 105.14043 * 1.22294 * 11 10 9 13 13 O 1.42898 * 110.72716 * 263.41812 * 12 11 10 14 14 C 1.50709 * 110.72252 * 140.31804 * 12 11 10 15 15 H 1.07997 * 119.99604 * 241.45312 * 14 12 11 16 16 C 1.37873 * 120.00166 * 61.45257 * 14 12 11 17 17 N 1.31522 * 119.99910 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00251 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46631 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47171 * 119.99839 * 18 16 14 21 21 H 1.48503 * 109.47222 * 240.00455 * 18 16 14 22 22 C 1.48539 * 110.99701 * 312.47161 * 9 8 7 23 23 C 1.38212 * 119.99857 * 90.00725 * 3 2 1 24 24 H 1.08998 * 109.46599 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46647 * 299.99691 * 1 2 3 26 26 H 1.08991 * 109.47157 * 59.99485 * 1 2 3 27 27 H 1.09001 * 109.46647 * 240.00308 * 2 1 3 28 28 H 1.08992 * 109.47295 * 119.99979 * 2 1 3 29 29 H 1.07997 * 120.00472 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99666 * 180.02562 * 5 4 3 31 31 H 1.07999 * 120.00076 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47001 * 30.23537 * 8 7 6 33 33 H 1.08993 * 109.47431 * 150.24031 * 8 7 6 34 34 H 1.08996 * 109.91640 * 333.51297 * 10 9 8 35 35 H 1.09005 * 109.91734 * 94.80203 * 10 9 8 36 36 H 1.09002 * 110.31026 * 120.14291 * 11 10 9 37 37 H 1.09003 * 110.30660 * 242.20780 * 11 10 9 38 38 H 0.96698 * 114.00542 * 298.54988 * 13 12 11 39 39 H 0.96999 * 119.99407 * 179.97438 * 17 16 14 40 40 H 1.09000 * 110.66768 * 278.15710 * 22 9 8 41 41 H 1.08998 * 110.66307 * 41.29043 * 22 9 8 42 42 H 1.08002 * 119.99812 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0728 -1.1973 5 6 2.7224 3.3761 -1.1973 6 6 2.9532 4.0277 0.0000 7 6 2.7187 3.3777 1.1969 8 6 2.9643 4.0899 2.5020 9 7 4.3519 3.8654 2.9289 10 6 5.3001 4.5801 2.0472 11 6 6.5660 3.7094 1.9449 12 6 6.2615 2.4531 2.7928 13 8 6.8013 2.5883 4.1090 14 6 6.7987 1.2146 2.1230 15 1 6.1236 0.4267 1.8236 16 6 8.1521 1.0875 1.8923 17 7 8.9743 2.0469 2.2573 18 14 8.8179 -0.4473 1.0613 19 1 7.6953 -1.3689 0.7515 20 1 9.5086 -0.0686 -0.1975 21 1 9.7787 -1.1244 1.9689 22 6 4.7128 2.4279 2.8311 23 6 2.2628 2.0724 1.1970 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0816 1.5640 -2.1326 30 1 2.9016 3.8855 -2.1327 31 1 3.3124 5.0462 0.0000 32 1 2.7930 5.1584 2.3707 33 1 2.2838 3.7034 3.2606 34 1 4.8600 4.7130 1.0589 35 1 5.5499 5.5495 2.4787 36 1 6.7504 3.4302 0.9075 37 1 7.4256 4.2426 2.3510 38 1 7.7632 2.6851 4.1317 39 1 9.9265 1.9572 2.0953 40 1 4.3584 1.8818 3.7053 41 1 4.3125 1.9922 1.9156 42 1 2.0825 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -46.597812 kcal Electronic energy + Delta-G solvation = -22146.059141 eV Core-core repulsion = 19089.564740 eV Total energy + Delta-G solvation = -3056.494401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15170 -39.42300 -36.80021 -34.90154 -34.16448 -32.97114 -30.84420 -30.21609 -29.62395 -27.28530 -25.58364 -24.72549 -23.02567 -21.92833 -21.45633 -20.69350 -19.02155 -17.48749 -16.98369 -16.90191 -16.50822 -16.17690 -16.06431 -15.52342 -15.00096 -14.81764 -14.57962 -14.32889 -14.08211 -13.92356 -13.50384 -13.37672 -13.18230 -12.87512 -12.82525 -12.57401 -12.54368 -12.30843 -12.22976 -12.21502 -12.15030 -11.75591 -11.67873 -11.54181 -11.05132 -10.60045 -10.09851 -9.62759 -9.51837 -9.20536 -8.21649 -6.36721 0.45049 0.50538 1.36119 1.39207 1.49814 2.36851 2.83187 3.02921 3.30127 3.80694 3.86446 3.97596 4.00578 4.16874 4.20309 4.22449 4.31120 4.46929 4.50227 4.53552 4.57865 4.68879 4.75556 4.80133 4.85419 4.93059 5.01928 5.08233 5.10285 5.20140 5.22394 5.26606 5.37759 5.49775 5.55647 5.58813 5.64304 5.72988 5.78901 5.94382 6.15183 6.18991 6.30152 6.68900 7.34681 7.48573 8.84115 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.006623 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.028853 B = 4226.943552 C = 5126.527909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 C -0.091 4.091 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.120 4.120 8 C 0.081 3.919 9 N -0.511 5.511 10 C 0.035 3.965 11 C -0.116 4.116 12 C 0.238 3.762 13 O -0.591 6.591 14 C -0.556 4.556 15 H 0.049 0.951 16 C 0.030 3.970 17 N -0.911 5.911 18 Si 0.955 3.045 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.277 1.277 22 C 0.057 3.943 23 C -0.118 4.118 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.370 0.630 39 H 0.268 0.732 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.233 1.408 -6.949 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.091 4.091 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.122 4.122 8 C -0.047 4.047 9 N -0.233 5.233 10 C -0.093 4.093 11 C -0.155 4.155 12 C 0.198 3.802 13 O -0.398 6.398 14 C -0.595 4.595 15 H 0.067 0.933 16 C -0.170 4.170 17 N -0.551 5.551 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.071 4.071 23 C -0.136 4.136 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.219 0.781 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.658 1.624 -6.212 16.003 hybrid contribution 1.423 -0.942 -1.236 2.107 sum -13.235 0.682 -7.448 15.202 Atomic orbital electron populations 1.21686 0.93343 1.02445 1.02034 1.20594 0.97241 0.91592 1.03034 1.20143 0.98819 0.97054 0.93071 1.21270 1.00175 0.95149 0.97996 1.21394 0.98993 0.95283 0.98460 1.21241 1.00481 1.00626 0.92265 1.20641 0.99306 0.95521 0.96731 1.21485 0.90394 1.00717 0.92056 1.65106 1.02139 1.07739 1.48286 1.22962 0.92956 0.97662 0.95722 1.22655 0.96070 0.97397 0.99415 1.19613 0.89266 0.91405 0.79905 1.86132 1.26241 1.96301 1.31149 1.21850 0.93209 1.04665 1.39744 0.93254 1.25666 0.97044 0.99036 0.95288 1.69832 1.03900 1.33513 1.47836 0.85564 0.78253 0.79863 0.78302 1.19578 1.20322 1.20299 1.23191 0.95090 0.89054 0.99732 1.21045 1.00018 0.94531 0.98055 0.91080 0.93048 0.92249 0.90358 0.91651 0.84407 0.84132 0.85331 0.88689 0.89488 0.92437 0.90770 0.94350 0.93646 0.78127 0.92262 0.92481 0.91839 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.90 71.98 0.71 -1.76 16 2 C -0.09 -1.96 6.06 29.85 0.18 -1.78 16 3 C -0.09 -2.48 5.13 -19.86 -0.10 -2.58 16 4 C -0.13 -3.25 9.70 22.27 0.22 -3.03 16 5 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 6 C -0.13 -3.58 8.19 22.27 0.18 -3.40 16 7 C -0.12 -3.65 3.96 -19.87 -0.08 -3.73 16 8 C 0.08 2.47 5.69 85.56 0.49 2.96 16 9 N -0.51 -19.92 5.54 -887.59 -4.91 -24.84 16 10 C 0.03 1.35 6.46 86.44 0.56 1.91 16 11 C -0.12 -5.62 5.26 31.47 0.17 -5.46 16 12 C 0.24 12.35 0.95 -10.33 -0.01 12.34 16 13 O -0.59 -32.66 13.10 -148.98 -1.95 -34.61 16 14 C -0.56 -30.95 8.14 25.60 0.21 -30.74 16 15 H 0.05 2.76 7.78 -2.91 -0.02 2.74 16 16 C 0.03 1.63 5.28 84.65 0.45 2.08 16 17 N -0.91 -50.12 11.00 21.45 0.24 -49.88 16 18 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.06 2.55 5.20 86.65 0.45 3.00 16 23 C -0.12 -3.55 7.15 22.27 0.16 -3.39 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 29 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.13 3.24 7.15 -2.91 -0.02 3.22 16 32 H 0.09 2.50 8.03 -2.39 -0.02 2.48 16 33 H 0.09 2.48 8.08 -2.39 -0.02 2.46 16 34 H 0.06 2.03 4.84 -2.39 -0.01 2.02 16 35 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 36 H 0.04 1.95 7.84 -2.39 -0.02 1.93 16 37 H 0.04 2.31 7.99 -2.39 -0.02 2.29 16 38 H 0.37 20.75 7.46 -74.06 -0.55 20.20 16 39 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.06 2.82 4.75 -2.39 -0.01 2.81 16 42 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -61.04 330.90 -0.35 -61.40 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.45 Total: 39.27 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 3.80 Total: -36.53 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -4.68 Total: -74.72 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.95 Total: -34.61 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -61.04 -0.35 -61.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.799 kcal (2) G-P(sol) polarization free energy of solvation -61.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds