Wall clock time and date at job start Mon Mar 30 2020 02:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47233 * 2 1 4 4 C 1.38256 * 120.00583 * 265.45309 * 3 2 1 5 5 C 1.38215 * 120.00695 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.99305 * 0.02562 * 5 4 3 7 7 C 1.38209 * 120.00164 * 359.69753 * 6 5 4 8 8 C 1.38217 * 119.99813 * 85.42732 * 3 2 1 9 9 C 1.50691 * 120.00021 * 0.02562 * 8 3 2 10 10 N 1.46900 * 109.47345 * 214.62941 * 9 8 3 11 11 C 1.47902 * 110.99893 * 282.85670 * 10 9 8 12 12 C 1.53997 * 107.05867 * 145.84262 * 11 10 9 13 13 C 1.54599 * 105.22367 * 358.72515 * 12 11 10 14 14 O 1.42896 * 110.72162 * 96.45215 * 13 12 11 15 15 C 1.50700 * 110.71933 * 219.73068 * 13 12 11 16 16 H 1.08000 * 119.99945 * 28.58098 * 15 13 12 17 17 C 1.37881 * 119.99759 * 208.57173 * 15 13 12 18 18 N 1.31516 * 119.99790 * 177.98881 * 17 15 13 19 19 Si 1.86795 * 120.00048 * 357.99744 * 17 15 13 20 20 H 1.48507 * 109.47178 * 90.68997 * 19 17 15 21 21 H 1.48500 * 109.46926 * 210.69076 * 19 17 15 22 22 H 1.48500 * 109.47245 * 330.69073 * 19 17 15 23 23 C 1.48527 * 110.99834 * 40.25204 * 10 9 8 24 24 H 1.09002 * 109.46899 * 59.99943 * 1 2 3 25 25 H 1.08999 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46696 * 299.99911 * 1 2 3 27 27 H 1.08998 * 109.46696 * 240.00088 * 2 1 3 28 28 H 1.08995 * 109.47083 * 120.00377 * 2 1 3 29 29 H 1.08009 * 119.99235 * 359.97438 * 4 3 2 30 30 H 1.07994 * 120.00522 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.99151 * 179.97438 * 6 5 4 32 32 H 1.08001 * 119.99850 * 180.29783 * 7 6 5 33 33 H 1.09007 * 109.47446 * 94.62755 * 9 8 3 34 34 H 1.08999 * 109.47636 * 334.62902 * 9 8 3 35 35 H 1.08995 * 109.91831 * 26.48598 * 11 10 9 36 36 H 1.09008 * 110.08104 * 265.28936 * 11 10 9 37 37 H 1.09006 * 110.30746 * 117.69031 * 12 11 10 38 38 H 1.08993 * 110.30668 * 239.75875 * 12 11 10 39 39 H 0.96705 * 114.00581 * 56.37504 * 14 13 12 40 40 H 0.97000 * 120.00011 * 180.02562 * 18 17 15 41 41 H 1.09004 * 110.66895 * 318.71347 * 23 10 9 42 42 H 1.08995 * 110.67018 * 81.84620 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3524 2.0410 -1.1935 5 6 2.8126 3.3442 -1.1936 6 6 2.9535 4.0275 0.0001 7 6 2.6282 3.4095 1.1927 8 6 2.1728 2.1041 1.1932 9 6 1.8241 1.4282 2.4941 10 7 1.2569 2.4154 3.4223 11 6 2.3188 3.2580 4.0138 12 6 1.7229 4.6644 4.2100 13 6 0.2788 4.5729 3.6657 14 8 -0.6477 4.3363 4.7275 15 6 -0.0852 5.8231 2.9071 16 1 0.6836 6.3965 2.4105 17 6 -1.3997 6.2348 2.8469 18 7 -1.7123 7.3470 2.2184 19 14 -2.7365 5.2130 3.6581 20 1 -2.9314 5.6733 5.0566 21 1 -4.0060 5.3702 2.9038 22 1 -2.3350 3.7833 3.6590 23 6 0.3460 3.3503 2.7136 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2426 1.5069 -2.1259 30 1 3.0629 3.8285 -2.1258 31 1 3.3135 5.0457 0.0000 32 1 2.7338 3.9449 2.1247 33 1 2.7236 0.9940 2.9306 34 1 1.0932 0.6408 2.3101 35 1 3.1729 3.3075 3.3385 36 1 2.6292 2.8487 4.9753 37 1 1.7126 4.9266 5.2680 38 1 2.2947 5.3998 3.6442 39 1 -0.6147 4.9968 5.4330 40 1 -2.6370 7.6368 2.1763 41 1 0.7644 3.6381 1.7491 42 1 -0.6410 2.9051 2.5886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:42 Heat of formation + Delta-G solvation = -22.916827 kcal Electronic energy + Delta-G solvation = -22656.134359 eV Core-core repulsion = 19600.666842 eV Total energy + Delta-G solvation = -3055.467517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67954 -39.54327 -37.04015 -35.25036 -34.42315 -32.97036 -30.97069 -30.16421 -29.90916 -27.43053 -25.69947 -24.75632 -22.68018 -22.30460 -21.45666 -20.91112 -19.42828 -17.65224 -17.18400 -17.12250 -16.66007 -16.28507 -16.08191 -15.46777 -15.01183 -14.96214 -14.63664 -14.45686 -14.26748 -14.16290 -13.71682 -13.55987 -13.31854 -12.93806 -12.79559 -12.74663 -12.51969 -12.33453 -12.28893 -12.09010 -12.02975 -11.77355 -11.63908 -11.40245 -11.12335 -10.65232 -10.10703 -9.59988 -9.45549 -9.17566 -8.33498 -6.45455 0.43981 0.48924 1.43500 1.53124 1.80246 2.47269 2.81520 2.98860 3.20517 3.58231 3.79043 3.89005 3.98138 4.01276 4.12039 4.16459 4.31745 4.37957 4.42823 4.54269 4.58397 4.61382 4.68668 4.73280 4.80073 4.85945 4.98649 5.01895 5.07184 5.11161 5.18112 5.20839 5.23644 5.38501 5.42493 5.50129 5.59247 5.65779 5.70165 5.97331 6.09303 6.14478 6.21406 6.60959 6.99953 7.34082 8.79468 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.006796 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.740280 B = 4118.996109 C = 4186.796366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.085 4.085 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.143 4.143 7 C -0.139 4.139 8 C -0.123 4.123 9 C 0.080 3.920 10 N -0.513 5.513 11 C 0.029 3.971 12 C -0.146 4.146 13 C 0.219 3.781 14 O -0.554 6.554 15 C -0.541 4.541 16 H 0.042 0.958 17 C 0.018 3.982 18 N -0.940 5.940 19 Si 1.010 2.990 20 H -0.282 1.282 21 H -0.345 1.345 22 H -0.260 1.260 23 C 0.046 3.954 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.372 0.628 40 H 0.264 0.736 41 H 0.069 0.931 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 -14.543 -2.557 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.161 4.161 7 C -0.157 4.157 8 C -0.125 4.125 9 C -0.048 4.048 10 N -0.236 5.236 11 C -0.098 4.098 12 C -0.184 4.184 13 C 0.179 3.821 14 O -0.362 6.362 15 C -0.579 4.579 16 H 0.061 0.939 17 C -0.181 4.181 18 N -0.579 5.579 19 Si 0.845 3.155 20 H -0.208 1.208 21 H -0.279 1.279 22 H -0.186 1.186 23 C -0.081 4.081 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.221 0.779 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.410 -15.245 -2.538 18.094 hybrid contribution -0.293 1.563 -0.257 1.611 sum 9.117 -13.682 -2.795 16.677 Atomic orbital electron populations 1.21760 0.95061 1.02449 1.01277 1.20575 0.95757 0.91258 1.04071 1.20056 0.98753 0.97535 0.92254 1.21305 0.99756 0.95148 0.98196 1.21387 0.99703 0.95241 0.98139 1.21311 1.01315 1.00180 0.93260 1.21725 0.98827 0.95489 0.99628 1.20578 1.00029 0.94913 0.96943 1.21540 1.00511 0.95233 0.87534 1.65046 1.14924 1.14304 1.29294 1.23134 0.93735 0.92451 1.00455 1.23040 0.97114 0.96459 1.01830 1.19969 0.86106 0.91520 0.84510 1.86342 1.60394 1.54984 1.34521 1.21560 0.93691 1.08856 1.33801 0.93948 1.25926 1.01664 0.95506 0.94996 1.70091 1.19487 1.24049 1.44252 0.84632 0.74010 0.80360 0.76464 1.20843 1.27891 1.18601 1.23658 0.95811 0.91880 0.96765 0.93219 0.90355 0.94372 0.89153 0.89909 0.83853 0.84376 0.86268 0.85154 0.88235 0.88786 0.91999 0.89134 0.90112 0.92115 0.77881 0.92711 0.91362 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.70 71.98 0.70 -2.52 16 2 C -0.08 -1.59 5.36 29.85 0.16 -1.43 16 3 C -0.09 -2.26 5.13 -19.87 -0.10 -2.36 16 4 C -0.13 -3.19 9.68 22.27 0.22 -2.98 16 5 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 6 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 7 C -0.14 -4.67 6.27 22.27 0.14 -4.53 16 8 C -0.12 -3.73 4.59 -19.87 -0.09 -3.82 16 9 C 0.08 2.27 5.24 85.55 0.45 2.72 16 10 N -0.51 -17.91 5.54 -887.24 -4.91 -22.82 16 11 C 0.03 0.92 5.71 86.45 0.49 1.42 16 12 C -0.15 -5.41 5.70 31.48 0.18 -5.23 16 13 C 0.22 9.92 0.81 -10.28 -0.01 9.91 16 14 O -0.55 -24.51 7.90 -148.98 -1.18 -25.69 16 15 C -0.54 -30.04 8.85 25.60 0.23 -29.82 16 16 H 0.04 2.60 7.88 -2.91 -0.02 2.57 16 17 C 0.02 1.04 5.47 84.66 0.46 1.51 16 18 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 19 Si 1.01 50.79 25.09 68.60 1.72 52.51 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.34 -18.01 7.11 99.48 0.71 -17.30 16 22 H -0.26 -13.05 5.43 99.48 0.54 -12.51 16 23 C 0.05 2.00 4.99 86.71 0.43 2.43 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.00 7.07 -2.39 -0.02 0.99 16 27 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 28 H 0.08 1.49 6.88 -2.39 -0.02 1.47 16 29 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.13 4.58 3.16 -2.91 -0.01 4.57 16 33 H 0.10 2.39 7.98 -2.38 -0.02 2.37 16 34 H 0.09 2.54 5.32 -2.39 -0.01 2.53 16 35 H 0.06 1.82 5.16 -2.39 -0.01 1.81 16 36 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.08 2.68 8.00 -2.38 -0.02 2.66 16 38 H 0.06 2.34 7.36 -2.39 -0.02 2.32 16 39 H 0.37 14.33 8.52 -74.05 -0.63 13.70 16 40 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.07 3.08 4.19 -2.39 -0.01 3.07 16 42 H 0.05 2.25 7.35 -2.39 -0.02 2.23 16 Total: -1.00 -68.22 313.55 -0.14 -68.36 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.23 Total: 28.52 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 3.70 Total: -42.29 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -4.61 Total: -81.41 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -1.18 Total: -25.69 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 1.72 Total: 52.51 kcal Total: -68.22 -0.14 -68.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.438 kcal (2) G-P(sol) polarization free energy of solvation -68.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds