Wall clock time and date at job start Mon Mar 30 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47106 * 2 1 4 4 C 1.38258 * 119.99911 * 267.25017 * 3 2 1 5 5 C 1.38206 * 119.99988 * 180.22802 * 4 3 2 6 6 C 1.38260 * 120.00009 * 359.81753 * 5 4 3 7 7 C 1.38207 * 120.00105 * 359.97438 * 6 5 4 8 8 C 1.38215 * 120.00230 * 87.04105 * 3 2 1 9 9 C 1.50696 * 119.99763 * 359.97438 * 8 3 2 10 10 N 1.46906 * 109.47265 * 280.55451 * 9 8 3 11 11 C 1.47444 * 110.99911 * 284.43233 * 10 9 8 12 12 C 1.54317 * 107.23302 * 236.73919 * 11 10 9 13 13 C 1.55139 * 103.17792 * 337.63163 * 12 11 10 14 14 O 1.42897 * 110.98987 * 277.64853 * 13 12 11 15 15 C 1.50695 * 110.98867 * 153.83247 * 13 12 11 16 16 H 1.08005 * 119.99702 * 241.44946 * 15 13 12 17 17 C 1.37874 * 120.00389 * 61.45475 * 15 13 12 18 18 N 1.31518 * 119.99725 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00111 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46928 * 119.99940 * 19 17 15 22 22 H 1.48493 * 109.47130 * 239.99660 * 19 17 15 23 23 C 1.47838 * 111.00046 * 163.59183 * 10 9 8 24 24 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47313 * 300.00080 * 1 2 3 26 26 H 1.08999 * 109.46935 * 60.00004 * 1 2 3 27 27 H 1.09000 * 109.47313 * 239.99920 * 2 1 3 28 28 H 1.09006 * 109.47129 * 119.99648 * 2 1 3 29 29 H 1.08000 * 119.99976 * 0.06571 * 4 3 2 30 30 H 1.07999 * 120.00016 * 179.83579 * 5 4 3 31 31 H 1.08000 * 120.00072 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.00476 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47120 * 160.55441 * 9 8 3 34 34 H 1.08998 * 109.47454 * 40.55558 * 9 8 3 35 35 H 1.08997 * 109.88652 * 117.33491 * 11 10 9 36 36 H 1.09000 * 110.02561 * 356.22191 * 11 10 9 37 37 H 1.09006 * 110.70252 * 96.10069 * 12 11 10 38 38 H 1.08995 * 110.70282 * 219.15581 * 12 11 10 39 39 H 0.96706 * 114.00218 * 298.54678 * 14 13 12 40 40 H 0.96994 * 119.99628 * 180.02562 * 18 17 15 41 41 H 1.09007 * 110.37231 * 265.19205 * 23 10 9 42 42 H 1.09001 * 110.37686 * 27.42293 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3169 2.0534 -1.1960 5 6 2.7821 3.3548 -1.1958 6 6 2.9593 4.0255 0.0002 7 6 2.6707 3.3946 1.1956 8 6 2.2045 2.0930 1.1954 9 6 1.8893 1.4053 2.4987 10 7 0.4379 1.4262 2.7249 11 6 -0.0110 2.7642 3.1520 12 6 -0.7322 2.5939 4.5057 13 6 -1.1529 1.1007 4.4969 14 8 -2.3652 0.9148 3.7636 15 6 -1.2867 0.5694 5.9007 16 1 -0.6585 -0.2442 6.2323 17 6 -2.2112 1.1217 6.7617 18 7 -2.9758 2.1126 6.3580 19 14 -2.3775 0.4625 8.5017 20 1 -1.4091 -0.6446 8.7063 21 1 -2.0966 1.5509 9.4722 22 1 -3.7584 -0.0421 8.7099 23 6 0.0490 0.4462 3.7612 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 2.1782 1.5297 -2.1303 30 1 3.0069 3.8481 -2.1299 31 1 3.3232 5.0423 0.0004 32 1 2.8087 3.9185 2.1298 33 1 2.3917 1.9250 3.3145 34 1 2.2357 0.3726 2.4577 35 1 -0.6993 3.1772 2.4146 36 1 0.8471 3.4259 3.2697 37 1 -0.0522 2.7979 5.3329 38 1 -1.6077 3.2408 4.5599 39 1 -3.1237 1.3895 4.1306 40 1 -3.6259 2.5014 6.9639 41 1 -0.2550 -0.4934 3.2999 42 1 0.8739 0.2786 4.4537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:47 Heat of formation + Delta-G solvation = -28.025497 kcal Electronic energy + Delta-G solvation = -22020.298365 eV Core-core repulsion = 18964.609320 eV Total energy + Delta-G solvation = -3055.689045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68695 -38.01177 -34.86414 -33.78457 -32.13128 -31.71425 -29.36784 -28.83676 -28.00266 -25.50030 -23.95672 -23.53863 -21.65636 -20.62852 -19.56271 -19.46447 -17.02400 -16.22164 -15.83001 -15.10860 -14.88479 -14.82709 -14.50630 -13.93910 -13.60166 -13.34597 -13.04294 -12.88596 -12.48229 -12.38068 -12.16763 -11.82905 -11.63631 -11.43935 -11.27754 -11.20608 -11.07884 -10.81858 -10.74207 -10.42387 -10.39971 -10.25098 -10.24493 -9.78698 -9.18490 -8.66129 -8.59446 -8.39208 -8.05322 -7.56057 -6.21075 -4.29197 1.53808 1.56867 3.20400 3.29379 3.33243 3.90020 4.29541 4.77710 4.94634 5.00123 5.07093 5.12128 5.19926 5.39426 5.47682 5.70486 5.73147 5.76494 5.81251 5.86769 5.89574 6.00178 6.12049 6.18948 6.21133 6.28144 6.33873 6.43716 6.49868 6.64423 6.65749 6.68585 6.88933 6.91573 7.04654 7.14483 7.20084 7.42761 7.50750 7.65601 7.76834 7.83294 8.17686 8.73540 9.39701 9.52746 10.85781 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031629 B = 0.004601 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.061405 B = 6083.526038 C = 6411.309638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.057 4.057 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.064 4.064 9 C 0.084 3.916 10 N -0.514 5.514 11 C 0.046 3.954 12 C -0.145 4.145 13 C 0.254 3.746 14 O -0.579 6.579 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.057 3.943 24 H 0.046 0.954 25 H 0.103 0.897 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.377 0.623 40 H 0.265 0.735 41 H 0.071 0.929 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.799 1.482 -10.809 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.115 4.115 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.148 4.148 7 C -0.130 4.130 8 C -0.065 4.065 9 C -0.044 4.044 10 N -0.237 5.237 11 C -0.082 4.082 12 C -0.184 4.184 13 C 0.213 3.787 14 O -0.386 6.386 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.070 4.070 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.226 0.774 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.818 1.086 -11.581 15.222 hybrid contribution -0.034 0.499 2.063 2.123 sum 9.785 1.585 -9.518 13.742 Atomic orbital electron populations 1.21948 0.93609 1.01547 1.04373 1.20484 0.97435 0.92028 1.01520 1.19775 0.97122 0.96620 0.92272 1.20977 1.00684 0.95175 0.97367 1.21024 1.00608 0.95001 0.97704 1.21014 1.01563 0.99623 0.92624 1.21049 0.99575 0.94442 0.97954 1.19716 0.97914 0.94022 0.94844 1.21222 0.90524 0.99758 0.92888 1.63567 1.10124 1.06103 1.43943 1.22841 0.98055 0.89558 0.97734 1.23263 0.99972 1.01712 0.93452 1.19586 0.81760 0.88990 0.88329 1.86135 1.20443 1.75283 1.56760 1.21580 1.20581 1.18615 0.96619 0.92115 1.24989 0.94999 0.94230 0.98822 1.69751 1.22751 1.24345 1.36511 0.86446 0.78109 0.78919 0.83961 1.19696 1.20960 1.20788 1.23098 0.97053 0.95470 0.91366 0.93493 0.87863 0.94026 0.92501 0.91180 0.86567 0.86676 0.86623 0.86551 0.94298 0.90412 0.91902 0.94586 0.92792 0.90540 0.77449 0.92468 0.91066 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.89 37.16 0.37 -1.99 16 2 C -0.08 -1.04 5.61 -27.88 -0.16 -1.20 16 3 C -0.06 -0.81 5.13 -104.62 -0.54 -1.35 16 4 C -0.12 -1.58 9.69 -39.59 -0.38 -1.97 16 5 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 6 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 7 C -0.11 -1.55 9.15 -39.59 -0.36 -1.91 16 8 C -0.06 -0.96 5.08 -104.63 -0.53 -1.49 16 9 C 0.08 1.33 4.12 -4.97 -0.02 1.31 16 10 N -0.51 -9.57 2.86 -232.38 -0.66 -10.23 16 11 C 0.05 0.89 6.50 -2.84 -0.02 0.88 16 12 C -0.14 -3.31 5.36 -24.91 -0.13 -3.44 16 13 C 0.25 6.18 0.88 -89.38 -0.08 6.10 16 14 O -0.58 -14.93 13.16 -35.23 -0.46 -15.40 16 15 C -0.54 -14.20 8.28 -34.44 -0.29 -14.48 16 16 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 17 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 18 N -0.89 -23.75 10.75 55.43 0.60 -23.15 16 19 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 C 0.06 1.20 5.84 -2.05 -0.01 1.19 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 1.86 5.74 -51.93 -0.30 1.56 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.07 0.95 6.25 -51.93 -0.32 0.62 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.51 7.81 -52.49 -0.41 1.10 16 33 H 0.04 0.61 7.64 -51.93 -0.40 0.22 16 34 H 0.08 1.16 6.31 -51.93 -0.33 0.84 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.04 0.64 6.66 -51.93 -0.35 0.30 16 37 H 0.05 1.26 8.03 -51.93 -0.42 0.85 16 38 H 0.08 1.87 7.53 -51.93 -0.39 1.48 16 39 H 0.38 9.85 7.57 45.56 0.34 10.20 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.05 0.94 7.71 -51.93 -0.40 0.54 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -26.98 330.70 -9.50 -36.48 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.89 Total: 12.27 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.04 Total: -20.45 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: -0.07 Total: -33.38 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.46 Total: -15.40 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.98 -9.50 -36.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.453 kcal (2) G-P(sol) polarization free energy of solvation -26.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds