Wall clock time and date at job start Mon Mar 30 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47106 * 2 1 4 4 C 1.38258 * 119.99911 * 267.25017 * 3 2 1 5 5 C 1.38206 * 119.99988 * 180.22802 * 4 3 2 6 6 C 1.38260 * 120.00009 * 359.81753 * 5 4 3 7 7 C 1.38207 * 120.00105 * 359.97438 * 6 5 4 8 8 C 1.38215 * 120.00230 * 87.04105 * 3 2 1 9 9 C 1.50696 * 119.99763 * 359.97438 * 8 3 2 10 10 N 1.46906 * 109.47265 * 280.55451 * 9 8 3 11 11 C 1.47444 * 110.99911 * 284.43233 * 10 9 8 12 12 C 1.54317 * 107.23302 * 236.73919 * 11 10 9 13 13 C 1.55139 * 103.17792 * 337.63163 * 12 11 10 14 14 O 1.42897 * 110.98987 * 277.64853 * 13 12 11 15 15 C 1.50695 * 110.98867 * 153.83247 * 13 12 11 16 16 H 1.08005 * 119.99702 * 241.44946 * 15 13 12 17 17 C 1.37874 * 120.00389 * 61.45475 * 15 13 12 18 18 N 1.31518 * 119.99725 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00111 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46928 * 119.99940 * 19 17 15 22 22 H 1.48493 * 109.47130 * 239.99660 * 19 17 15 23 23 C 1.47838 * 111.00046 * 163.59183 * 10 9 8 24 24 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47313 * 300.00080 * 1 2 3 26 26 H 1.08999 * 109.46935 * 60.00004 * 1 2 3 27 27 H 1.09000 * 109.47313 * 239.99920 * 2 1 3 28 28 H 1.09006 * 109.47129 * 119.99648 * 2 1 3 29 29 H 1.08000 * 119.99976 * 0.06571 * 4 3 2 30 30 H 1.07999 * 120.00016 * 179.83579 * 5 4 3 31 31 H 1.08000 * 120.00072 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.00476 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47120 * 160.55441 * 9 8 3 34 34 H 1.08998 * 109.47454 * 40.55558 * 9 8 3 35 35 H 1.08997 * 109.88652 * 117.33491 * 11 10 9 36 36 H 1.09000 * 110.02561 * 356.22191 * 11 10 9 37 37 H 1.09006 * 110.70252 * 96.10069 * 12 11 10 38 38 H 1.08995 * 110.70282 * 219.15581 * 12 11 10 39 39 H 0.96706 * 114.00218 * 298.54678 * 14 13 12 40 40 H 0.96994 * 119.99628 * 180.02562 * 18 17 15 41 41 H 1.09007 * 110.37231 * 265.19205 * 23 10 9 42 42 H 1.09001 * 110.37686 * 27.42293 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3169 2.0534 -1.1960 5 6 2.7821 3.3548 -1.1958 6 6 2.9593 4.0255 0.0002 7 6 2.6707 3.3946 1.1956 8 6 2.2045 2.0930 1.1954 9 6 1.8893 1.4053 2.4987 10 7 0.4379 1.4262 2.7249 11 6 -0.0110 2.7642 3.1520 12 6 -0.7322 2.5939 4.5057 13 6 -1.1529 1.1007 4.4969 14 8 -2.3652 0.9148 3.7636 15 6 -1.2867 0.5694 5.9007 16 1 -0.6585 -0.2442 6.2323 17 6 -2.2112 1.1217 6.7617 18 7 -2.9758 2.1126 6.3580 19 14 -2.3775 0.4625 8.5017 20 1 -1.4091 -0.6446 8.7063 21 1 -2.0966 1.5509 9.4722 22 1 -3.7584 -0.0421 8.7099 23 6 0.0490 0.4462 3.7612 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 2.1782 1.5297 -2.1303 30 1 3.0069 3.8481 -2.1299 31 1 3.3232 5.0423 0.0004 32 1 2.8087 3.9185 2.1298 33 1 2.3917 1.9250 3.3145 34 1 2.2357 0.3726 2.4577 35 1 -0.6993 3.1772 2.4146 36 1 0.8471 3.4259 3.2697 37 1 -0.0522 2.7979 5.3329 38 1 -1.6077 3.2408 4.5599 39 1 -3.1237 1.3895 4.1306 40 1 -3.6259 2.5014 6.9639 41 1 -0.2550 -0.4934 3.2999 42 1 0.8739 0.2786 4.4537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:46 Heat of formation + Delta-G solvation = -42.545393 kcal Electronic energy + Delta-G solvation = -22020.927995 eV Core-core repulsion = 18964.609320 eV Total energy + Delta-G solvation = -3056.318675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86280 -39.56615 -36.56459 -34.89632 -34.17170 -33.02652 -30.69489 -30.10426 -29.78417 -27.09107 -25.59815 -24.60837 -22.73352 -22.04141 -21.39861 -20.75192 -18.99050 -17.23340 -17.19509 -16.88241 -16.55796 -16.10074 -15.92296 -15.65911 -14.85000 -14.55032 -14.33167 -14.16686 -13.94594 -13.79714 -13.72614 -13.30539 -13.13139 -12.99445 -12.81746 -12.69793 -12.54336 -12.45214 -12.22992 -12.22035 -11.96326 -11.62195 -11.49782 -11.31496 -11.05594 -10.59934 -10.06700 -9.64241 -9.41892 -9.07146 -8.21276 -6.37041 0.52540 0.58006 1.38374 1.42126 1.52272 2.37898 2.84837 3.03644 3.35704 3.83064 3.94398 4.04387 4.08058 4.14015 4.22517 4.27501 4.40850 4.43761 4.50037 4.61961 4.73431 4.75184 4.79821 4.81333 4.84904 4.92531 5.09536 5.14445 5.23883 5.24315 5.28335 5.38092 5.49384 5.55672 5.66150 5.68755 5.77616 5.82953 5.92296 6.00234 6.20405 6.25816 6.31092 6.69372 7.34946 7.46712 8.83991 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031629 B = 0.004601 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.061405 B = 6083.526038 C = 6411.309638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 C -0.072 4.072 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.124 4.124 8 C -0.084 4.084 9 C 0.086 3.914 10 N -0.509 5.509 11 C 0.058 3.942 12 C -0.135 4.135 13 C 0.237 3.763 14 O -0.586 6.586 15 C -0.561 4.561 16 H 0.054 0.946 17 C 0.032 3.968 18 N -0.911 5.911 19 Si 0.958 3.042 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.067 3.933 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.370 0.630 40 H 0.268 0.732 41 H 0.066 0.934 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.147 1.765 -11.911 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 C -0.072 4.072 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.151 4.151 7 C -0.143 4.143 8 C -0.084 4.084 9 C -0.041 4.041 10 N -0.233 5.233 11 C -0.070 4.070 12 C -0.175 4.175 13 C 0.197 3.803 14 O -0.394 6.394 15 C -0.599 4.599 16 H 0.072 0.928 17 C -0.169 4.169 18 N -0.550 5.550 19 Si 0.783 3.217 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.060 4.060 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.138 0.862 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.219 0.781 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.181 1.368 -12.693 16.970 hybrid contribution -0.442 0.438 2.346 2.427 sum 10.739 1.806 -10.347 15.022 Atomic orbital electron populations 1.21853 0.94936 1.01334 1.02937 1.20447 0.96103 0.92169 1.02320 1.19926 0.97655 0.96946 0.92681 1.21272 1.00149 0.95716 0.97595 1.21409 0.99227 0.94721 0.98778 1.21335 1.00850 1.00689 0.92216 1.21211 0.99912 0.94221 0.98959 1.19671 0.99598 0.94741 0.94408 1.21241 0.88373 1.00605 0.93879 1.63540 1.12409 1.04834 1.42474 1.22675 0.98276 0.90542 0.95459 1.23063 0.99100 1.00361 0.94940 1.19822 0.82095 0.90250 0.88088 1.86132 1.20859 1.75346 1.57015 1.21857 1.21096 1.18901 0.98031 0.92758 1.25668 0.94666 0.94410 1.02163 1.69840 1.22851 1.24811 1.37541 0.85518 0.77957 0.78371 0.79807 1.19491 1.20454 1.20529 1.22915 0.95842 0.95615 0.91648 0.93125 0.90945 0.93665 0.90362 0.91702 0.84593 0.83855 0.84315 0.86215 0.94190 0.89700 0.92642 0.92647 0.93894 0.92729 0.78149 0.92297 0.91607 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.89 71.98 0.71 -3.75 16 2 C -0.07 -1.85 5.61 29.85 0.17 -1.69 16 3 C -0.07 -1.90 5.13 -19.86 -0.10 -2.00 16 4 C -0.13 -2.93 9.69 22.27 0.22 -2.72 16 5 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 6 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 7 C -0.12 -3.22 9.15 22.27 0.20 -3.02 16 8 C -0.08 -2.38 5.08 -19.87 -0.10 -2.48 16 9 C 0.09 2.68 4.12 85.55 0.35 3.03 16 10 N -0.51 -18.90 2.86 -889.10 -2.54 -21.44 16 11 C 0.06 2.28 6.50 86.65 0.56 2.84 16 12 C -0.14 -6.31 5.36 31.77 0.17 -6.14 16 13 C 0.24 11.81 0.88 -9.99 -0.01 11.80 16 14 O -0.59 -31.09 13.16 -148.98 -1.96 -33.05 16 15 C -0.56 -30.18 8.28 25.60 0.21 -29.97 16 16 H 0.05 2.91 7.79 -2.91 -0.02 2.89 16 17 C 0.03 1.67 5.29 84.65 0.45 2.12 16 18 N -0.91 -49.04 10.75 21.45 0.23 -48.81 16 19 Si 0.96 42.22 29.54 68.60 2.03 44.24 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 C 0.07 2.86 5.84 86.94 0.51 3.37 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 2.60 5.74 -2.39 -0.01 2.58 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.62 8.07 -2.39 -0.02 1.61 16 28 H 0.06 1.69 6.25 -2.38 -0.01 1.67 16 29 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.12 2.92 7.81 -2.91 -0.02 2.89 16 33 H 0.04 1.23 7.64 -2.38 -0.02 1.21 16 34 H 0.08 2.48 6.31 -2.39 -0.02 2.47 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 1.94 6.66 -2.39 -0.02 1.93 16 37 H 0.04 2.05 8.03 -2.38 -0.02 2.03 16 38 H 0.05 2.75 7.53 -2.39 -0.02 2.73 16 39 H 0.37 20.06 7.57 -74.05 -0.56 19.50 16 40 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 41 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 42 H 0.05 2.03 7.71 -2.39 -0.02 2.01 16 Total: -1.00 -57.50 330.70 1.99 -55.52 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.44 Total: 37.16 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 3.79 Total: -33.61 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -2.31 Total: -70.26 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.96 Total: -33.05 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -57.50 1.99 -55.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.970 kcal (2) G-P(sol) polarization free energy of solvation -57.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds