Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47737 * 2 1 4 4 C 1.52994 * 109.47404 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47062 * 180.02562 * 4 3 2 6 6 C 1.38367 * 119.84941 * 270.24898 * 5 4 3 7 7 C 1.37954 * 120.14173 * 180.25528 * 6 5 4 8 8 C 1.39581 * 119.85304 * 359.49191 * 7 6 5 9 9 C 1.47846 * 120.14415 * 180.27302 * 8 7 6 10 10 O 1.21558 * 119.99978 * 328.11092 * 9 8 7 11 11 N 1.34777 * 119.99957 * 148.11157 * 9 8 7 12 12 C 1.46497 * 119.99676 * 4.29405 * 11 9 8 13 13 C 1.46500 * 119.99778 * 184.29976 * 11 9 8 14 14 C 1.50702 * 109.47249 * 89.99600 * 13 11 9 15 15 H 1.08000 * 119.99664 * 359.97438 * 14 13 11 16 16 C 1.37871 * 119.99982 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00094 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47184 * 90.00096 * 18 16 14 20 20 H 1.48506 * 109.46910 * 210.00085 * 18 16 14 21 21 H 1.48496 * 109.47163 * 329.99849 * 18 16 14 22 22 C 1.39573 * 119.71225 * 0.25561 * 8 7 6 23 23 C 1.37955 * 119.85245 * 359.97438 * 22 8 7 24 24 H 1.08999 * 109.47426 * 60.00087 * 1 2 3 25 25 H 1.09002 * 109.47697 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47044 * 300.00515 * 1 2 3 27 27 H 1.09004 * 109.47044 * 239.99485 * 2 1 3 28 28 H 1.09006 * 109.46947 * 120.00407 * 2 1 3 29 29 H 1.08997 * 109.46926 * 59.99598 * 3 2 1 30 30 H 1.09005 * 109.46751 * 300.00011 * 3 2 1 31 31 H 1.08997 * 109.47552 * 59.99804 * 4 3 2 32 32 H 1.09005 * 109.47032 * 299.99663 * 4 3 2 33 33 H 1.07997 * 119.92715 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.07071 * 179.77053 * 7 6 5 35 35 H 1.09003 * 109.46683 * 94.49074 * 12 11 9 36 36 H 1.09003 * 109.46605 * 214.48789 * 12 11 9 37 37 H 1.08994 * 109.47647 * 334.48547 * 12 11 9 38 38 H 1.08996 * 109.46737 * 209.99608 * 13 11 9 39 39 H 1.09002 * 109.47242 * 329.99738 * 13 11 9 40 40 H 0.97000 * 119.99917 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.07760 * 180.02562 * 22 8 7 42 42 H 1.08004 * 119.93016 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8631 0.0000 6 6 4.2966 3.5149 -1.1998 7 6 4.7615 4.8137 -1.2063 8 6 4.9956 5.4739 0.0010 9 6 5.4881 6.8680 0.0016 10 8 6.2144 7.2563 -0.8924 11 7 5.1317 7.7082 0.9933 12 6 4.3343 7.2157 2.1193 13 6 5.5416 9.1138 0.9451 14 6 4.4903 9.9193 0.2261 15 1 3.6055 9.4327 -0.1571 16 6 4.6580 11.2774 0.0574 17 7 5.7356 11.8698 0.5236 18 14 3.3545 12.2760 -0.8332 19 1 2.3556 12.7724 0.1470 20 1 3.9947 13.4296 -1.5149 21 1 2.6771 11.4199 -1.8399 22 6 4.7624 4.8125 1.2077 23 6 4.3021 3.5120 1.2002 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9562 -0.8900 31 1 3.9330 0.9286 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 4.1108 3.0044 -2.1332 34 1 4.9396 5.3201 -2.1435 35 1 4.9967 6.9338 2.9377 36 1 3.6559 8.0003 2.4546 37 1 3.7570 6.3469 1.8033 38 1 5.6587 9.4930 1.9602 39 1 6.4898 9.1978 0.4142 40 1 5.8538 12.8252 0.4046 41 1 4.9412 5.3178 2.1453 42 1 4.1208 2.9991 2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592520338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = -18.805082 kcal Electronic energy + Delta-G solvation = -20577.750596 eV Core-core repulsion = 17522.461378 eV Total energy + Delta-G solvation = -3055.289218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99252 -38.20018 -35.85845 -34.95227 -32.89590 -32.18896 -30.91412 -29.05212 -27.55621 -26.12325 -24.64259 -23.01662 -22.41289 -21.52205 -20.95751 -19.11347 -16.70976 -16.51881 -16.11086 -15.72447 -15.31456 -14.78595 -14.53316 -14.30547 -14.09999 -14.06136 -13.50337 -13.11932 -13.03765 -12.76778 -12.49532 -12.32195 -12.12497 -11.94613 -11.58450 -11.44853 -11.37146 -11.16963 -10.93006 -10.89550 -10.81643 -10.64028 -10.51825 -10.15977 -9.64150 -9.02292 -8.81735 -8.51283 -8.42989 -7.65205 -6.04353 -4.09392 1.13288 1.47789 3.30356 3.34624 3.37358 3.42504 3.86369 4.16049 4.44711 4.49155 4.62943 4.79806 4.86021 4.96634 5.03167 5.08389 5.18561 5.30277 5.42267 5.42645 5.44518 5.48129 5.55222 5.66045 5.71895 5.74477 5.86081 5.86771 5.97840 5.99963 6.09720 6.11239 6.22993 6.40118 6.56536 6.60565 6.98786 7.09064 7.44377 7.52633 7.92098 8.22733 8.38802 8.88955 9.06713 9.55705 11.03751 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.003435 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.686168 B = 8149.263834 C = 8535.298948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.081 4.081 5 C -0.072 4.072 6 C -0.127 4.127 7 C -0.064 4.064 8 C -0.120 4.120 9 C 0.544 3.456 10 O -0.539 6.539 11 N -0.593 5.593 12 C 0.066 3.934 13 C 0.244 3.756 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.101 4.101 23 C -0.129 4.129 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.143 0.857 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 -22.622 2.653 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.118 4.118 5 C -0.072 4.072 6 C -0.145 4.145 7 C -0.083 4.083 8 C -0.124 4.124 9 C 0.331 3.669 10 O -0.417 6.417 11 N -0.324 5.324 12 C -0.078 4.078 13 C 0.125 3.875 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.119 4.119 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.160 0.840 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.022 -22.184 2.217 23.374 hybrid contribution -0.753 0.744 -0.395 1.130 sum -7.775 -21.440 1.822 22.878 Atomic orbital electron populations 1.21781 0.95905 1.01467 1.01976 1.21547 0.95880 0.96866 1.01935 1.21617 0.94306 0.96668 1.02704 1.20636 0.95656 0.92667 1.02826 1.19996 0.98008 0.95952 0.93267 1.20943 1.01275 0.94749 0.97578 1.21240 0.95358 0.93967 0.97760 1.20248 1.02570 0.95344 0.94210 1.18231 0.81500 0.84583 0.82545 1.90742 1.37231 1.77434 1.36337 1.48054 1.51491 1.12187 1.20712 1.22267 0.95547 1.00760 0.89179 1.19339 0.97000 0.73421 0.97758 1.21436 1.05618 0.92727 1.36877 0.92419 1.24940 0.95847 0.97674 0.95650 1.69935 1.26625 1.10719 1.46059 0.86481 0.81395 0.79631 0.79838 1.20607 1.21042 1.19868 1.21942 0.97114 0.94542 0.98327 1.20938 1.01671 0.94647 0.97494 0.92702 0.92897 0.92700 0.92071 0.92062 0.91687 0.91712 0.91040 0.91032 0.85896 0.85126 0.93289 0.91019 0.90569 0.94812 0.93559 0.92682 0.83951 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.82 5.93 -26.74 -0.16 -0.97 16 3 C -0.12 -0.90 5.20 -26.74 -0.14 -1.03 16 4 C -0.08 -0.66 5.34 -27.88 -0.15 -0.81 16 5 C -0.07 -0.80 5.14 -104.53 -0.54 -1.34 16 6 C -0.13 -1.59 9.68 -39.64 -0.38 -1.98 16 7 C -0.06 -1.02 9.60 -39.18 -0.38 -1.40 16 8 C -0.12 -2.11 5.47 -104.97 -0.57 -2.68 16 9 C 0.54 12.22 7.44 -12.33 -0.09 12.13 16 10 O -0.54 -14.35 16.31 5.32 0.09 -14.27 16 11 N -0.59 -13.19 2.86 -184.08 -0.53 -13.72 16 12 C 0.07 1.09 8.80 59.85 0.53 1.62 16 13 C 0.24 6.55 5.21 -5.19 -0.03 6.52 16 14 C -0.53 -15.26 9.39 -34.44 -0.32 -15.59 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 18 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 22 C -0.10 -1.41 7.44 -39.19 -0.29 -1.70 16 23 C -0.13 -1.49 9.68 -39.64 -0.38 -1.87 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.13 2.14 7.95 -52.49 -0.42 1.72 16 35 H 0.05 0.68 7.44 -51.93 -0.39 0.29 16 36 H 0.07 1.21 8.11 -51.93 -0.42 0.78 16 37 H 0.08 1.10 4.72 -51.93 -0.25 0.85 16 38 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.05 1.40 7.37 -51.93 -0.38 1.01 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.14 1.79 4.80 -52.49 -0.25 1.54 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -33.47 346.86 -8.85 -42.32 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.71 Total: -2.44 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.64 Total: -8.05 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.21 Total: -39.86 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.47 -8.85 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592520338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.516 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds