Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47737 * 2 1 4 4 C 1.52994 * 109.47404 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47062 * 180.02562 * 4 3 2 6 6 C 1.38367 * 119.84941 * 270.24898 * 5 4 3 7 7 C 1.37954 * 120.14173 * 180.25528 * 6 5 4 8 8 C 1.39581 * 119.85304 * 359.49191 * 7 6 5 9 9 C 1.47846 * 120.14415 * 180.27302 * 8 7 6 10 10 O 1.21558 * 119.99978 * 328.11092 * 9 8 7 11 11 N 1.34777 * 119.99957 * 148.11157 * 9 8 7 12 12 C 1.46497 * 119.99676 * 4.29405 * 11 9 8 13 13 C 1.46500 * 119.99778 * 184.29976 * 11 9 8 14 14 C 1.50702 * 109.47249 * 89.99600 * 13 11 9 15 15 H 1.08000 * 119.99664 * 359.97438 * 14 13 11 16 16 C 1.37871 * 119.99982 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00094 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47184 * 90.00096 * 18 16 14 20 20 H 1.48506 * 109.46910 * 210.00085 * 18 16 14 21 21 H 1.48496 * 109.47163 * 329.99849 * 18 16 14 22 22 C 1.39573 * 119.71225 * 0.25561 * 8 7 6 23 23 C 1.37955 * 119.85245 * 359.97438 * 22 8 7 24 24 H 1.08999 * 109.47426 * 60.00087 * 1 2 3 25 25 H 1.09002 * 109.47697 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47044 * 300.00515 * 1 2 3 27 27 H 1.09004 * 109.47044 * 239.99485 * 2 1 3 28 28 H 1.09006 * 109.46947 * 120.00407 * 2 1 3 29 29 H 1.08997 * 109.46926 * 59.99598 * 3 2 1 30 30 H 1.09005 * 109.46751 * 300.00011 * 3 2 1 31 31 H 1.08997 * 109.47552 * 59.99804 * 4 3 2 32 32 H 1.09005 * 109.47032 * 299.99663 * 4 3 2 33 33 H 1.07997 * 119.92715 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.07071 * 179.77053 * 7 6 5 35 35 H 1.09003 * 109.46683 * 94.49074 * 12 11 9 36 36 H 1.09003 * 109.46605 * 214.48789 * 12 11 9 37 37 H 1.08994 * 109.47647 * 334.48547 * 12 11 9 38 38 H 1.08996 * 109.46737 * 209.99608 * 13 11 9 39 39 H 1.09002 * 109.47242 * 329.99738 * 13 11 9 40 40 H 0.97000 * 119.99917 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.07760 * 180.02562 * 22 8 7 42 42 H 1.08004 * 119.93016 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8631 0.0000 6 6 4.2966 3.5149 -1.1998 7 6 4.7615 4.8137 -1.2063 8 6 4.9956 5.4739 0.0010 9 6 5.4881 6.8680 0.0016 10 8 6.2144 7.2563 -0.8924 11 7 5.1317 7.7082 0.9933 12 6 4.3343 7.2157 2.1193 13 6 5.5416 9.1138 0.9451 14 6 4.4903 9.9193 0.2261 15 1 3.6055 9.4327 -0.1571 16 6 4.6580 11.2774 0.0574 17 7 5.7356 11.8698 0.5236 18 14 3.3545 12.2760 -0.8332 19 1 2.3556 12.7724 0.1470 20 1 3.9947 13.4296 -1.5149 21 1 2.6771 11.4199 -1.8399 22 6 4.7624 4.8125 1.2077 23 6 4.3021 3.5120 1.2002 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9562 -0.8900 31 1 3.9330 0.9286 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 4.1108 3.0044 -2.1332 34 1 4.9396 5.3201 -2.1435 35 1 4.9967 6.9338 2.9377 36 1 3.6559 8.0003 2.4546 37 1 3.7570 6.3469 1.8033 38 1 5.6587 9.4930 1.9602 39 1 6.4898 9.1978 0.4142 40 1 5.8538 12.8252 0.4046 41 1 4.9412 5.3178 2.1453 42 1 4.1208 2.9991 2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592520338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -38.006645 kcal Electronic energy + Delta-G solvation = -20578.583238 eV Core-core repulsion = 17522.461378 eV Total energy + Delta-G solvation = -3056.121860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36680 -39.55588 -36.80132 -36.55339 -34.85695 -33.27357 -32.04397 -30.29055 -29.11171 -27.67060 -25.88774 -24.55543 -23.53917 -22.40092 -21.72516 -20.65731 -18.74347 -18.19682 -17.48764 -16.74761 -16.61941 -16.17124 -16.12718 -15.48704 -15.33615 -14.88215 -14.57938 -14.46884 -14.28757 -13.88131 -13.71731 -13.63456 -13.46480 -13.31327 -13.03238 -12.90439 -12.61456 -12.38210 -12.27612 -12.11113 -11.96813 -11.76435 -11.71152 -11.57133 -11.31523 -10.75173 -10.67812 -9.88599 -9.65793 -9.45680 -8.26365 -6.42076 -0.02681 0.43442 1.34183 1.37619 1.48136 1.85903 2.26377 2.40332 2.84867 3.02881 3.59896 3.82832 3.87310 4.02454 4.17126 4.23010 4.31109 4.39874 4.44068 4.49785 4.59342 4.65620 4.75680 4.87164 4.89393 4.92575 4.98426 4.99509 5.08351 5.13230 5.16709 5.22975 5.37018 5.37724 5.42738 5.46456 5.51007 5.57196 5.67779 5.77415 5.99851 6.00611 6.62770 6.68470 7.20975 7.36605 8.81060 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.003435 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.686168 B = 8149.263834 C = 8535.298948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.077 4.077 5 C -0.058 4.058 6 C -0.124 4.124 7 C -0.084 4.084 8 C -0.151 4.151 9 C 0.535 3.465 10 O -0.601 6.601 11 N -0.601 5.601 12 C 0.061 3.939 13 C 0.257 3.743 14 C -0.548 4.548 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.927 5.927 18 Si 0.971 3.029 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.274 1.274 22 C -0.098 4.098 23 C -0.120 4.120 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.030 0.970 39 H -0.001 1.001 40 H 0.269 0.731 41 H 0.157 0.843 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 -25.339 3.780 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.151 4.151 4 C -0.114 4.114 5 C -0.058 4.058 6 C -0.142 4.142 7 C -0.103 4.103 8 C -0.154 4.154 9 C 0.325 3.675 10 O -0.484 6.484 11 N -0.330 5.330 12 C -0.080 4.080 13 C 0.136 3.864 14 C -0.586 4.586 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.795 3.205 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.199 1.199 22 C -0.116 4.116 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.048 0.952 39 H 0.017 0.983 40 H 0.078 0.922 41 H 0.174 0.826 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.218 -24.933 3.390 26.798 hybrid contribution -0.074 1.457 -0.724 1.629 sum -9.292 -23.476 2.666 25.389 Atomic orbital electron populations 1.21801 0.96053 1.01839 1.01684 1.21524 0.95740 0.96076 1.02594 1.21587 0.93854 0.97420 1.02217 1.20709 0.95789 0.90491 1.04428 1.20437 0.95570 0.97276 0.92505 1.21181 1.00206 0.93200 0.99570 1.21226 0.96965 0.95554 0.96529 1.19910 1.06162 0.92796 0.96528 1.19120 0.80428 0.86610 0.81345 1.90682 1.39977 1.79130 1.38607 1.48065 1.51991 1.10471 1.22513 1.22604 0.95799 1.01441 0.88142 1.18832 0.94728 0.76419 0.96407 1.21671 1.05813 0.93556 1.37580 0.93078 1.25891 0.98189 0.98807 0.96223 1.70051 1.28394 1.11302 1.46893 0.85367 0.78674 0.77747 0.78728 1.18496 1.20350 1.19921 1.22065 0.96726 0.95597 0.97212 1.21354 0.99681 0.93411 0.99270 0.93202 0.92243 0.92831 0.91649 0.91169 0.91832 0.92659 0.89936 0.89076 0.83530 0.87309 0.90047 0.91475 0.87886 0.95235 0.98283 0.92228 0.82587 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.16 5.93 30.59 0.18 -0.98 16 3 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 4 C -0.08 -0.91 5.34 29.85 0.16 -0.75 16 5 C -0.06 -1.07 5.14 -19.80 -0.10 -1.17 16 6 C -0.12 -2.86 9.68 22.23 0.22 -2.64 16 7 C -0.08 -2.70 9.60 22.53 0.22 -2.48 16 8 C -0.15 -5.34 5.47 -20.09 -0.11 -5.45 16 9 C 0.53 25.34 7.44 86.79 0.65 25.98 16 10 O -0.60 -34.65 16.31 -3.90 -0.06 -34.71 16 11 N -0.60 -27.75 2.86 -854.57 -2.44 -30.19 16 12 C 0.06 1.98 8.80 127.77 1.12 3.10 16 13 C 0.26 14.62 5.21 85.63 0.45 15.06 16 14 C -0.55 -32.89 9.39 25.60 0.24 -32.65 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -57.25 13.29 21.44 0.28 -56.96 16 18 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 22 C -0.10 -2.51 7.44 22.52 0.17 -2.34 16 23 C -0.12 -2.25 9.68 22.23 0.22 -2.04 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.09 0.81 8.08 -2.38 -0.02 0.79 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.11 3.86 7.95 -2.91 -0.02 3.84 16 35 H 0.08 2.10 7.44 -2.39 -0.02 2.08 16 36 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 37 H 0.10 2.77 4.72 -2.39 -0.01 2.76 16 38 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 39 H 0.00 -0.06 7.37 -2.39 -0.02 -0.08 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.16 3.47 4.80 -2.91 -0.01 3.46 16 42 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -78.03 346.86 5.53 -72.50 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.98 Total: 8.90 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.74 Total: -7.47 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.16 Total: -87.15 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.06 Total: -34.71 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -78.03 5.53 -72.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592520338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.496 kcal (2) G-P(sol) polarization free energy of solvation -78.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds