Wall clock time and date at job start Mon Mar 30 2020 02:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47565 * 2 1 4 4 C 1.52995 * 109.47565 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47031 * 59.99553 * 4 3 2 6 6 C 1.53006 * 109.46883 * 299.99908 * 4 3 2 7 7 C 1.50697 * 109.47038 * 179.97438 * 4 3 2 8 8 O 1.21278 * 120.00295 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99678 * 179.97438 * 7 4 3 10 10 C 1.39245 * 119.99818 * 184.29341 * 9 7 4 11 11 C 1.39478 * 119.83133 * 324.71393 * 10 9 7 12 12 C 1.36376 * 120.16851 * 180.30000 * 11 10 9 13 13 C 1.40870 * 119.82435 * 359.48078 * 12 11 10 14 14 C 1.41152 * 120.16559 * 180.25164 * 13 12 11 15 15 H 1.08005 * 120.00309 * 215.01209 * 14 13 12 16 16 C 1.39911 * 119.99818 * 35.01274 * 14 13 12 17 17 N 1.30870 * 120.00156 * 355.54750 * 16 14 13 18 18 Si 1.86801 * 119.99934 * 175.54588 * 16 14 13 19 19 H 1.48498 * 109.47355 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47104 * 120.00313 * 18 16 14 21 21 H 1.48503 * 109.46847 * 239.99816 * 18 16 14 22 22 C 1.40868 * 119.67258 * 0.51483 * 13 12 11 23 23 C 1.36372 * 119.83061 * 359.73921 * 22 13 12 24 24 H 1.08999 * 109.47238 * 300.00480 * 1 2 3 25 25 H 1.08995 * 109.46983 * 60.00182 * 1 2 3 26 26 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47238 * 239.99520 * 2 1 3 28 28 H 1.09009 * 109.47013 * 119.99961 * 2 1 3 29 29 H 1.08999 * 109.47234 * 59.99518 * 3 2 1 30 30 H 1.09001 * 109.47042 * 300.00310 * 3 2 1 31 31 H 1.09003 * 109.46333 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47220 * 300.00276 * 5 4 3 33 33 H 1.09001 * 109.46590 * 60.00294 * 5 4 3 34 34 H 1.08999 * 109.46867 * 299.99839 * 6 4 3 35 35 H 1.08998 * 109.47257 * 59.99792 * 6 4 3 36 36 H 1.08995 * 109.46800 * 180.02562 * 6 4 3 37 37 H 0.97000 * 120.00176 * 4.29900 * 9 7 4 38 38 H 1.07996 * 119.91740 * 0.02562 * 11 10 9 39 39 H 1.07993 * 120.08812 * 179.69823 * 12 11 10 40 40 H 0.96992 * 120.00291 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.08601 * 179.71268 * 22 13 12 42 42 H 1.07999 * 119.91808 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7209 -1.2483 6 6 4.0795 0.7214 1.2503 7 6 4.0723 2.8633 0.0000 8 8 3.2843 3.7851 -0.0004 9 7 5.3974 3.1095 0.0009 10 6 5.8621 4.4190 0.0906 11 6 5.1538 5.4504 -0.5258 12 6 5.6059 6.7346 -0.4475 13 6 6.7858 7.0196 0.2675 14 6 7.2574 8.3469 0.3576 15 1 8.3194 8.5433 0.3665 16 6 6.3491 9.4083 0.4355 17 7 5.0645 9.1787 0.3372 18 14 6.9701 11.1530 0.6800 19 1 8.4529 11.1441 0.7599 20 1 6.5416 11.9959 -0.4651 21 1 6.4093 11.7061 1.9389 22 6 7.4957 5.9726 0.8874 23 6 7.0339 4.6927 0.7960 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 5.1706 0.7214 -1.2479 32 1 3.7172 -0.3067 -1.2482 33 1 3.7176 1.2346 -2.1384 34 1 3.7157 1.2354 2.1400 35 1 3.7161 -0.3062 1.2503 36 1 5.1694 0.7218 1.2510 37 1 6.0274 2.3745 -0.0609 38 1 4.2473 5.2308 -1.0702 39 1 5.0591 7.5315 -0.9293 40 1 4.4348 9.9144 0.3916 41 1 8.4035 6.1829 1.4333 42 1 7.5768 3.8890 1.2710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593015721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:32 Heat of formation + Delta-G solvation = -40.877030 kcal Electronic energy + Delta-G solvation = -21108.938985 eV Core-core repulsion = 18052.692656 eV Total energy + Delta-G solvation = -3056.246330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14856 -37.70591 -36.29685 -34.42063 -33.11842 -32.30020 -29.48178 -28.85588 -27.44920 -26.56491 -25.19522 -23.42307 -21.56543 -21.08353 -20.04877 -18.58076 -17.26311 -16.89230 -16.03228 -15.36958 -15.17703 -14.69524 -14.54725 -14.04437 -13.89231 -13.33009 -13.15851 -12.82739 -12.66731 -12.34528 -12.32326 -12.02016 -11.94634 -11.75469 -11.68140 -11.42274 -11.17662 -11.07425 -10.91650 -10.87890 -10.66983 -10.48235 -10.45979 -9.87104 -9.81605 -9.34584 -8.92592 -8.65646 -7.49467 -6.84710 -6.56582 -4.30268 2.62305 3.03045 3.12175 3.12530 3.17636 3.39436 3.75908 4.01234 4.62563 4.73934 4.78963 4.83164 5.05658 5.08918 5.21162 5.40193 5.49176 5.60578 5.63457 5.69403 5.76381 5.76628 5.82739 5.91723 6.03381 6.05581 6.12445 6.16139 6.31838 6.40727 6.42123 6.84780 7.04338 7.07715 7.23749 7.33565 7.66788 7.71817 8.02220 8.12627 8.24892 8.37796 8.70402 8.83870 8.96513 9.05442 10.34565 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033856 B = 0.003665 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.841210 B = 7638.176619 C = 8174.504505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.095 4.095 4 C -0.081 4.081 5 C -0.142 4.142 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.527 6.527 9 N -0.652 5.652 10 C 0.007 3.993 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.099 3.901 14 C -0.463 4.463 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.808 5.808 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.115 4.115 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.393 0.607 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.277 0.723 41 H 0.096 0.904 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -16.054 -1.020 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.133 4.133 4 C -0.084 4.084 5 C -0.199 4.199 6 C -0.198 4.198 7 C 0.293 3.707 8 O -0.403 6.403 9 N -0.295 5.295 10 C -0.085 4.085 11 C -0.114 4.114 12 C -0.164 4.164 13 C 0.097 3.903 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.435 5.435 18 Si 0.740 3.260 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.224 4.224 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.226 0.774 38 H 0.125 0.875 39 H 0.147 0.853 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.134 -15.267 -1.004 15.849 hybrid contribution 0.533 0.476 0.279 0.767 sum -3.601 -14.791 -0.725 15.241 Atomic orbital electron populations 1.21764 0.95980 1.01202 1.02031 1.21677 0.95772 0.96990 1.01989 1.21425 0.91979 0.96310 1.03581 1.20792 0.97449 0.92832 0.97370 1.21916 1.01049 1.00507 0.96454 1.21899 1.01096 1.00378 0.96445 1.20479 0.82559 0.90677 0.76940 1.90697 1.55210 1.45785 1.48587 1.43015 1.06558 1.07685 1.72272 1.17316 0.99277 0.83014 1.08914 1.20643 0.98734 0.92855 0.99194 1.21303 0.99220 0.94633 1.01199 1.17725 0.91566 0.92595 0.88453 1.19507 0.94222 0.90615 1.45093 0.90638 1.25892 0.94598 1.01211 0.92949 1.69797 1.02215 1.33631 1.37873 0.86165 0.79956 0.81451 0.78477 1.18641 1.20013 1.20020 1.20687 1.02934 0.92603 1.06147 1.20072 0.96794 0.96453 1.00210 0.92725 0.92728 0.93023 0.91822 0.91818 0.91223 0.91238 0.92294 0.91362 0.92051 0.92067 0.91405 0.92273 0.77351 0.87531 0.85252 0.91169 0.88581 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.17 5.23 -26.73 -0.14 -1.31 16 3 C -0.10 -1.18 3.56 -26.73 -0.10 -1.27 16 4 C -0.08 -1.01 0.65 -155.66 -0.10 -1.11 16 5 C -0.14 -1.44 8.01 37.16 0.30 -1.14 16 6 C -0.14 -1.48 8.02 37.16 0.30 -1.18 16 7 C 0.51 9.06 6.31 -10.99 -0.07 8.99 16 8 O -0.53 -11.88 13.40 5.56 0.07 -11.81 16 9 N -0.65 -11.63 5.08 -9.74 -0.05 -11.68 16 10 C 0.01 0.16 6.31 -83.57 -0.53 -0.37 16 11 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 12 C -0.14 -3.92 8.61 -39.26 -0.34 -4.26 16 13 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 14 C -0.46 -12.54 9.02 -37.85 -0.34 -12.88 16 15 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 16 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 17 N -0.81 -21.89 10.61 55.55 0.59 -21.30 16 18 Si 0.91 19.37 29.56 -169.99 -5.03 14.35 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.20 -4.99 9.74 -39.26 -0.38 -5.37 16 23 C -0.12 -2.55 9.90 -39.79 -0.39 -2.94 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 28 H 0.06 0.54 6.43 -51.92 -0.33 0.20 16 29 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 30 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.06 0.55 7.47 -51.93 -0.39 0.16 16 32 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 36 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 37 H 0.39 5.53 7.67 -40.82 -0.31 5.21 16 38 H 0.11 2.73 6.22 -52.49 -0.33 2.41 16 39 H 0.13 3.70 6.15 -52.49 -0.32 3.37 16 40 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 41 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 42 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -30.64 334.90 -8.25 -38.89 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.43 Total: 9.27 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.45 Total: -22.76 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.54 Total: -32.98 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.64 -8.25 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593015721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.989 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds