Wall clock time and date at job start Mon Mar 30 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47382 * 2 1 4 4 C 1.53006 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46624 * 60.00275 * 4 3 2 6 6 C 1.52994 * 109.47318 * 300.00244 * 4 3 2 7 7 C 1.50694 * 109.47064 * 179.97438 * 4 3 2 8 8 O 1.21294 * 120.00246 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99983 * 179.97438 * 7 4 3 10 10 C 1.39938 * 120.00022 * 174.40296 * 9 7 4 11 11 C 1.39293 * 119.95012 * 145.35712 * 10 9 7 12 12 C 1.38481 * 120.43331 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32226 * 0.27585 * 12 11 10 14 14 C 1.40743 * 119.88203 * 359.45377 * 13 12 11 15 15 C 1.41409 * 120.21195 * 180.27061 * 14 13 12 16 16 H 1.07994 * 120.00901 * 214.59288 * 15 14 13 17 17 C 1.39932 * 119.99628 * 34.59343 * 15 14 13 18 18 N 1.30835 * 120.00303 * 5.45214 * 17 15 14 19 19 Si 1.86805 * 120.00027 * 185.45234 * 17 15 14 20 20 H 1.48493 * 109.47058 * 90.00378 * 19 17 15 21 21 H 1.48503 * 109.46984 * 209.99794 * 19 17 15 22 22 H 1.48500 * 109.46976 * 329.99869 * 19 17 15 23 23 C 1.38248 * 119.95014 * 325.33799 * 10 9 7 24 24 H 1.08999 * 109.47343 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47298 * 300.00623 * 1 2 3 26 26 H 1.09003 * 109.46615 * 59.99507 * 1 2 3 27 27 H 1.09000 * 109.47298 * 239.99377 * 2 1 3 28 28 H 1.09003 * 109.46615 * 120.00493 * 2 1 3 29 29 H 1.09004 * 109.47016 * 60.00069 * 3 2 1 30 30 H 1.08997 * 109.47433 * 299.99525 * 3 2 1 31 31 H 1.09003 * 109.46962 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47440 * 299.99818 * 5 4 3 33 33 H 1.08997 * 109.47463 * 60.00301 * 5 4 3 34 34 H 1.09004 * 109.47300 * 299.99789 * 6 4 3 35 35 H 1.08998 * 109.47400 * 59.99690 * 6 4 3 36 36 H 1.08998 * 109.46922 * 180.02562 * 6 4 3 37 37 H 0.96995 * 120.00055 * 354.41017 * 9 7 4 38 38 H 1.08006 * 119.77967 * 0.02562 * 11 10 9 39 39 H 1.08003 * 119.83887 * 180.02562 * 12 11 10 40 40 H 1.07996 * 120.05851 * 179.70078 * 13 12 11 41 41 H 0.96992 * 120.00185 * 180.02562 * 18 17 15 42 42 H 1.08002 * 120.15542 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0805 0.7209 -1.2483 6 6 4.0796 0.7212 1.2501 7 6 4.0725 2.8631 0.0000 8 8 3.2844 3.7851 -0.0004 9 7 5.3976 3.1093 0.0009 10 6 5.8653 4.4228 -0.1178 11 6 7.0205 4.8132 0.5553 12 6 7.4926 6.1104 0.4445 13 6 6.8211 7.0307 -0.3287 14 6 5.6556 6.6492 -1.0193 15 6 4.9637 7.5872 -1.8200 16 1 3.8868 7.5472 -1.8901 17 6 5.6745 8.5674 -2.5215 18 7 6.9828 8.5516 -2.5229 19 14 4.7555 9.8986 -3.4558 20 1 4.5232 11.0607 -2.5612 21 1 5.5621 10.3285 -4.6263 22 1 3.4509 9.3646 -3.9229 23 6 5.1802 5.3310 -0.9035 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6769 1.9562 -0.8900 31 1 5.1705 0.7204 -1.2477 32 1 3.7171 -0.3067 -1.2484 33 1 3.7176 1.2347 -2.1385 34 1 3.7160 1.2352 2.1399 35 1 3.7162 -0.3064 1.2502 36 1 5.1696 0.7216 1.2507 37 1 6.0271 2.3760 0.0838 38 1 7.5521 4.0993 1.1671 39 1 8.3895 6.4026 0.9703 40 1 7.1903 8.0425 -0.4083 41 1 7.4754 9.2313 -3.0089 42 1 4.2843 5.0293 -1.4257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593169883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:35 Heat of formation + Delta-G solvation = -61.540274 kcal Electronic energy + Delta-G solvation = -21224.494579 eV Core-core repulsion = 18167.352224 eV Total energy + Delta-G solvation = -3057.142355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63752 -39.33835 -37.59199 -36.19967 -34.88479 -33.39394 -31.75730 -29.91242 -28.27789 -27.44499 -27.24809 -25.04656 -23.14530 -22.70290 -21.57199 -19.96016 -19.46024 -17.83951 -17.37901 -16.97817 -16.52384 -16.32518 -15.86319 -15.70851 -15.17398 -14.93783 -14.68102 -14.17560 -13.94645 -13.91902 -13.57221 -13.33499 -13.11682 -12.97999 -12.90173 -12.84186 -12.72085 -12.62474 -12.20513 -12.01421 -11.95695 -11.78971 -11.59350 -11.48425 -11.31752 -11.18645 -10.86035 -10.49402 -9.34623 -8.76126 -8.54674 -6.42799 0.84252 0.96788 1.34606 1.44363 1.49072 1.80878 2.20300 2.24162 2.76789 3.56478 3.66317 3.72915 3.87861 4.18172 4.27731 4.33142 4.43857 4.56540 4.58185 4.73903 4.78856 4.80778 4.92681 4.92944 5.00946 5.04988 5.07028 5.09922 5.11969 5.18211 5.23228 5.24686 5.31393 5.36835 5.47068 5.52650 5.75936 5.82528 6.03059 6.10067 6.33954 6.63600 6.67136 6.92841 6.98500 7.33227 8.39959 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.004325 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.199462 B = 6472.913054 C = 7409.677803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.071 4.071 5 C -0.141 4.141 6 C -0.139 4.139 7 C 0.506 3.494 8 O -0.572 6.572 9 N -0.656 5.656 10 C 0.152 3.848 11 C -0.239 4.239 12 C -0.095 4.095 13 C -0.184 4.184 14 C 0.090 3.910 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.035 3.965 18 N -0.838 5.838 19 Si 0.984 3.016 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.267 1.267 23 C -0.228 4.228 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.419 0.581 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.287 0.713 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 -17.822 4.277 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.133 4.133 4 C -0.074 4.074 5 C -0.198 4.198 6 C -0.197 4.197 7 C 0.295 3.705 8 O -0.450 6.450 9 N -0.302 5.302 10 C 0.059 3.941 11 C -0.260 4.260 12 C -0.113 4.113 13 C -0.204 4.204 14 C 0.087 3.913 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.178 4.178 18 N -0.465 5.465 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.186 1.186 22 H -0.191 1.191 23 C -0.249 4.249 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.793 -17.108 4.167 18.012 hybrid contribution -0.164 0.984 -0.590 1.159 sum -3.957 -16.124 3.577 16.983 Atomic orbital electron populations 1.21790 0.95851 1.02241 1.01340 1.21648 0.95898 0.94351 1.03619 1.21432 0.92021 0.98515 1.01368 1.20847 0.97358 0.88950 1.00219 1.21958 1.01971 1.01653 0.94191 1.21962 1.02057 1.01662 0.93976 1.21720 0.81669 0.92874 0.74265 1.90723 1.56360 1.48324 1.49620 1.43410 1.07703 1.06924 1.72150 1.17585 0.95420 0.84719 0.96405 1.20561 1.00200 0.97516 1.07698 1.20884 0.98982 0.93241 0.98227 1.21312 0.99203 0.99433 1.00403 1.17823 0.92421 0.91172 0.89868 1.19681 0.94364 1.13123 1.26969 0.92262 1.26638 0.95705 0.99127 0.96285 1.69822 1.08133 1.32653 1.35896 0.85189 0.78701 0.77565 0.78087 1.18402 1.18571 1.19145 1.21027 1.03371 0.94312 1.06212 0.91035 0.93336 0.93674 0.90276 0.89840 0.93256 0.93881 0.90996 0.87897 0.93948 0.93120 0.88048 0.90753 0.74271 0.84707 0.85594 0.88022 0.90290 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.76 16 2 C -0.12 -1.87 5.23 30.59 0.16 -1.71 16 3 C -0.10 -2.34 3.56 30.59 0.11 -2.23 16 4 C -0.07 -1.66 0.65 -52.93 -0.03 -1.70 16 5 C -0.14 -2.64 8.02 71.98 0.58 -2.06 16 6 C -0.14 -2.31 8.02 71.98 0.58 -1.73 16 7 C 0.51 18.30 6.20 87.65 0.54 18.84 16 8 O -0.57 -27.43 13.77 -3.07 -0.04 -27.47 16 9 N -0.66 -22.98 5.11 -303.64 -1.55 -24.54 16 10 C 0.15 6.96 6.25 38.10 0.24 7.20 16 11 C -0.24 -10.08 9.97 22.58 0.23 -9.85 16 12 C -0.09 -4.36 10.01 22.20 0.22 -4.14 16 13 C -0.18 -10.07 8.62 22.75 0.20 -9.88 16 14 C 0.09 5.30 5.50 -21.31 -0.12 5.18 16 15 C -0.51 -30.56 9.04 23.46 0.21 -30.35 16 16 H 0.06 3.58 7.85 -2.91 -0.02 3.56 16 17 C 0.04 1.90 5.31 85.25 0.45 2.36 16 18 N -0.84 -46.09 10.98 21.82 0.24 -45.85 16 19 Si 0.98 41.54 29.56 68.60 2.03 43.57 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 C -0.23 -12.64 8.39 22.85 0.19 -12.44 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.05 6.43 -2.39 -0.02 1.03 16 28 H 0.08 1.03 6.43 -2.39 -0.02 1.01 16 29 H 0.05 1.38 8.10 -2.38 -0.02 1.36 16 30 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 31 H 0.07 1.19 7.70 -2.39 -0.02 1.17 16 32 H 0.10 1.27 6.43 -2.39 -0.02 1.25 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.10 1.08 6.43 -2.39 -0.02 1.07 16 36 H 0.07 1.02 7.45 -2.39 -0.02 1.01 16 37 H 0.42 10.69 7.69 -92.71 -0.71 9.97 16 38 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.10 5.80 6.49 -2.91 -0.02 5.78 16 41 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 42 H 0.08 4.76 6.51 -2.91 -0.02 4.74 16 Total: -1.00 -73.41 336.15 5.24 -68.18 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.30 Total: 30.37 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 4.27 Total: -44.27 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.31 Total: -70.38 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.04 Total: -27.47 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -73.41 5.24 -68.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593169883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.636 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds