Wall clock time and date at job start Mon Mar 30 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47422 * 2 1 4 4 C 1.53004 * 109.47016 * 240.00191 * 2 1 3 5 5 C 1.50700 * 109.47372 * 60.00308 * 4 2 1 6 6 H 1.08000 * 119.99584 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99936 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99625 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00186 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.46953 * 90.00106 * 9 7 5 11 11 H 1.48498 * 109.46930 * 210.00492 * 9 7 5 12 12 H 1.48497 * 109.46978 * 329.99976 * 9 7 5 13 13 C 1.53001 * 109.47204 * 120.00107 * 2 1 3 14 14 N 1.46494 * 109.47133 * 300.00206 * 13 2 1 15 15 C 1.39966 * 120.00024 * 180.02562 * 14 13 2 16 16 C 1.38530 * 119.94354 * 359.97148 * 15 14 13 17 17 C 1.38222 * 120.26078 * 180.02562 * 16 15 14 18 18 C 1.38351 * 119.82882 * 0.19098 * 17 16 15 19 19 C 1.37881 * 120.11108 * 0.02562 * 18 17 16 20 20 C 1.38672 * 120.82802 * 359.60604 * 19 18 17 21 21 O 1.36238 * 111.26042 * 181.02600 * 20 19 18 22 22 C 1.43786 * 109.16862 * 340.67030 * 21 20 19 23 23 C 1.51659 * 132.10710 * 179.09056 * 19 18 17 24 24 H 1.09000 * 109.46685 * 300.00144 * 1 2 3 25 25 H 1.09001 * 109.46663 * 59.99552 * 1 2 3 26 26 H 1.08996 * 109.47388 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46743 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47017 * 300.00015 * 3 2 1 29 29 H 1.09000 * 109.46857 * 59.99951 * 3 2 1 30 30 H 1.09004 * 109.47053 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47031 * 299.99777 * 4 2 1 32 32 H 0.96997 * 119.99705 * 179.97438 * 8 7 5 33 33 H 1.08991 * 109.47258 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.46650 * 59.99534 * 13 2 1 35 35 H 0.97006 * 120.00254 * 359.97438 * 14 13 2 36 36 H 1.07996 * 119.87236 * 0.02743 * 16 15 14 37 37 H 1.08004 * 120.08086 * 180.21004 * 17 16 15 38 38 H 1.08003 * 119.94268 * 180.02562 * 18 17 16 39 39 H 1.08998 * 110.75813 * 269.53668 * 22 21 20 40 40 H 1.08998 * 110.91441 * 146.24102 * 22 21 20 41 41 H 1.09002 * 110.93416 * 313.77258 * 23 19 18 42 42 H 1.09004 * 110.92965 * 77.40739 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 1.4316 0.1376 -4.8058 9 14 2.9443 -2.0010 -3.9034 10 1 2.0857 -3.2117 -3.9483 11 1 3.7358 -1.9086 -5.1565 12 1 3.8650 -2.0898 -2.7418 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8903 -0.5087 3.7166 16 6 2.6867 -1.6351 3.8423 17 6 3.0247 -2.1130 5.0945 18 6 2.5619 -1.4655 6.2262 19 6 1.7652 -0.3466 6.1058 20 6 1.4227 0.1510 4.8576 21 8 0.6521 1.2693 4.9660 22 6 0.0726 1.3176 6.2810 23 6 1.1051 0.5475 7.1378 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7216 -1.2491 31 1 1.6767 -1.7489 -1.2493 32 1 1.6660 -0.1938 -5.6868 33 1 3.1299 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 3.0451 -2.1418 2.9585 37 1 3.6486 -2.9895 5.1891 38 1 2.8252 -1.8371 7.2055 39 1 -0.8940 0.8141 6.2959 40 1 -0.0245 2.3470 6.6259 41 1 0.6089 -0.0453 7.9063 42 1 1.8296 1.2299 7.5822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593932088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:13 Heat of formation + Delta-G solvation = -17.836125 kcal Electronic energy + Delta-G solvation = -21235.570576 eV Core-core repulsion = 18180.323375 eV Total energy + Delta-G solvation = -3055.247201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00987 -38.31496 -37.01415 -34.46519 -32.39015 -31.63490 -29.54302 -28.65203 -27.48620 -26.49716 -25.79473 -23.40185 -22.45428 -22.13157 -20.64636 -18.34376 -17.22805 -17.10991 -16.76534 -16.24009 -15.79606 -15.06681 -14.45815 -14.41002 -13.93561 -13.59823 -13.32426 -13.13436 -13.02833 -12.95330 -12.65219 -12.30596 -12.26808 -11.82016 -11.63515 -11.30448 -11.12765 -11.06205 -10.97494 -10.84942 -10.60220 -10.43405 -10.05207 -9.77983 -9.68732 -9.48780 -8.98149 -8.53518 -8.31396 -7.03502 -6.03736 -4.00884 1.36932 1.64274 3.28166 3.30336 3.38380 3.41074 3.71559 3.83958 4.35424 4.45102 4.54028 4.84135 5.00724 5.15653 5.28710 5.29511 5.34405 5.38642 5.50291 5.53624 5.59517 5.67046 5.70092 5.89914 6.07988 6.15244 6.16864 6.28794 6.38124 6.38274 6.59577 6.60831 6.64273 6.70256 6.90768 7.04713 7.06244 7.10302 7.20407 7.37331 7.58448 7.79614 7.99620 8.54236 9.00963 9.58693 11.09202 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031378 B = 0.003888 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.131542 B = 7199.350110 C = 7877.510450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.128 4.128 4 C -0.001 4.001 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.130 3.870 14 N -0.736 5.736 15 C 0.221 3.779 16 C -0.176 4.176 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.130 4.130 20 C 0.017 3.983 21 O -0.307 6.307 22 C 0.054 3.946 23 C -0.109 4.109 24 H 0.032 0.968 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -1.413 23.281 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.185 4.185 4 C -0.039 4.039 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.006 3.994 14 N -0.366 5.366 15 C 0.115 3.885 16 C -0.200 4.200 17 C -0.112 4.112 18 C -0.164 4.164 19 C -0.131 4.131 20 C -0.031 4.031 21 O -0.222 6.222 22 C -0.022 4.022 23 C -0.146 4.146 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.293 -1.340 22.736 22.777 hybrid contribution 0.357 -0.619 -0.132 0.727 sum 0.651 -1.960 22.604 22.699 Atomic orbital electron populations 1.21756 0.94840 1.01119 1.00798 1.20641 0.95831 0.95931 0.93729 1.21752 1.00283 0.95662 1.00806 1.19592 0.96154 0.95409 0.92745 1.21093 1.31756 1.13345 0.88638 0.90422 1.25009 0.95738 0.96773 0.95976 1.69906 1.45959 1.40590 0.97874 0.86842 0.81280 0.83920 0.77609 1.20397 1.21507 1.19058 1.21604 0.98033 0.95721 0.84004 1.44972 1.56816 1.33027 1.01778 1.17257 0.95442 0.92454 0.83310 1.20461 1.03346 0.97617 0.98545 1.20764 0.99435 0.99516 0.91528 1.19973 1.01518 0.96339 0.98528 1.20481 1.01443 0.97889 0.93309 1.18915 1.00038 0.90890 0.93287 1.86813 1.62250 1.38888 1.34220 1.23711 0.96196 1.01734 0.80521 1.21777 0.97888 0.97462 0.97512 0.94871 0.91037 0.93541 0.93527 0.91035 0.94849 0.96460 0.96920 0.92808 0.92660 0.92680 0.76030 0.85168 0.85845 0.86592 0.91062 0.88079 0.89440 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.06 -1.15 0.54 -154.50 -0.08 -1.23 16 3 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.80 8.20 -34.44 -0.28 -14.08 16 6 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.13 2.13 3.80 -4.04 -0.02 2.11 16 14 N -0.74 -11.35 5.15 -58.41 -0.30 -11.65 16 15 C 0.22 3.29 6.68 -83.43 -0.56 2.74 16 16 C -0.18 -2.38 9.29 -39.48 -0.37 -2.75 16 17 C -0.09 -1.09 10.06 -39.55 -0.40 -1.49 16 18 C -0.14 -1.62 10.03 -39.67 -0.40 -2.02 16 19 C -0.13 -1.58 6.27 -104.12 -0.65 -2.23 16 20 C 0.02 0.24 6.90 -38.82 -0.27 -0.02 16 21 O -0.31 -4.24 11.03 -20.50 -0.23 -4.46 16 22 C 0.05 0.50 8.01 38.05 0.30 0.81 16 23 C -0.11 -0.97 7.12 -26.52 -0.19 -1.16 16 24 H 0.03 0.54 6.86 -51.93 -0.36 0.18 16 25 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 29 H 0.03 0.54 6.86 -51.93 -0.36 0.19 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.06 0.90 7.94 -51.93 -0.41 0.48 16 34 H 0.05 0.89 7.94 -51.93 -0.41 0.47 16 35 H 0.40 6.29 6.11 -40.82 -0.25 6.04 16 36 H 0.13 1.68 6.70 -52.49 -0.35 1.33 16 37 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -30.27 329.53 -8.40 -38.67 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.45 Total: 4.17 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -2.49 Total: -21.79 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.47 Total: -38.28 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.23 Total: -4.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.27 -8.40 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.836 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds