Wall clock time and date at job start Mon Mar 30 2020 01:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99916 * 2 1 4 4 C 1.38811 * 120.01912 * 269.97877 * 3 2 1 5 5 C 1.50703 * 119.95462 * 0.02562 * 4 3 2 6 6 C 1.38170 * 120.09483 * 180.02562 * 4 3 2 7 7 C 1.38166 * 120.12471 * 359.74571 * 6 4 3 8 8 C 1.38933 * 120.03443 * 0.50728 * 7 6 4 9 9 N 1.39664 * 120.04281 * 179.76785 * 8 7 6 10 10 C 1.46490 * 120.00450 * 4.94249 * 9 8 7 11 11 C 1.53005 * 109.47407 * 184.38528 * 10 9 8 12 12 C 1.50700 * 115.55006 * 80.49990 * 11 10 9 13 13 H 1.07999 * 120.00158 * 219.68106 * 12 11 10 14 14 C 1.37878 * 119.99891 * 39.67241 * 12 11 10 15 15 N 1.31510 * 120.00303 * 19.64442 * 14 12 11 16 16 Si 1.86805 * 119.99750 * 199.64386 * 14 12 11 17 17 H 1.48496 * 109.46951 * 60.00524 * 16 14 12 18 18 H 1.48505 * 109.47102 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47454 * 299.99971 * 16 14 12 20 20 C 1.52996 * 117.49721 * 294.82703 * 11 10 9 21 21 C 1.52992 * 60.03219 * 252.49840 * 20 11 10 22 22 C 1.38573 * 120.01526 * 90.00039 * 3 2 1 23 23 C 1.50697 * 120.06590 * 359.95895 * 22 3 2 24 24 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47377 * 299.99486 * 1 2 3 26 26 H 1.09002 * 109.47555 * 59.99893 * 1 2 3 27 27 H 1.08995 * 109.47379 * 89.99947 * 5 4 3 28 28 H 1.09002 * 109.47101 * 209.99798 * 5 4 3 29 29 H 1.09000 * 109.46704 * 329.99727 * 5 4 3 30 30 H 1.07999 * 119.94198 * 180.02562 * 6 4 3 31 31 H 1.08003 * 119.98310 * 180.27622 * 7 6 4 32 32 H 0.97010 * 119.99727 * 184.94539 * 9 8 7 33 33 H 1.09006 * 109.47329 * 64.38316 * 10 9 8 34 34 H 1.08999 * 109.47390 * 304.38658 * 10 9 8 35 35 H 0.97000 * 120.00233 * 184.93248 * 15 14 12 36 36 H 1.08997 * 117.49900 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.49644 * 144.99738 * 20 11 10 38 38 H 1.08999 * 117.49892 * 107.50477 * 21 20 11 39 39 H 1.09002 * 117.50196 * 252.52256 * 21 20 11 40 40 H 1.09001 * 109.46936 * 264.72480 * 23 22 3 41 41 H 1.09001 * 109.47218 * 24.72045 * 23 22 3 42 42 H 1.08996 * 109.47664 * 144.72599 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3616 1.8294 -1.2019 5 6 2.0192 1.1576 -2.5067 6 6 2.9893 3.0603 -1.2037 7 6 3.3002 3.6819 -0.0096 8 6 2.9914 3.0652 1.1964 9 7 3.3100 3.6912 2.4036 10 6 3.8707 5.0446 2.4013 11 6 4.2286 5.4508 3.8324 12 6 5.5377 4.9148 4.3520 13 1 5.6138 4.5725 5.3735 14 6 6.6383 4.8612 3.5233 15 7 6.6821 5.6046 2.4393 16 14 8.0673 3.7326 3.9402 17 1 7.5894 2.3277 3.9930 18 1 9.1185 3.8595 2.8988 19 1 8.6305 4.1139 5.2602 20 6 3.0803 5.6016 4.8321 21 6 3.7989 6.8433 4.3006 22 6 2.3606 1.8285 1.1999 23 6 2.0186 1.1592 2.5060 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.0212 1.4624 -2.8214 28 1 2.7445 1.4486 -3.2666 29 1 2.0443 0.0757 -2.3758 30 1 3.2334 3.5395 -2.1403 31 1 3.7869 4.6461 -0.0137 32 1 3.1599 3.2298 3.2436 33 1 3.1358 5.7417 1.9988 34 1 4.7679 5.0652 1.7827 35 1 7.4226 5.5149 1.8192 36 1 2.0699 5.4111 4.4704 37 1 3.2717 5.3131 5.8656 38 1 3.2613 7.4701 3.5892 39 1 4.4634 7.3716 4.9844 40 1 1.0618 1.5359 2.8677 41 1 1.9513 0.0817 2.3555 42 1 2.7950 1.3758 3.2397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594701099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:50 Heat of formation + Delta-G solvation = 4.750151 kcal Electronic energy + Delta-G solvation = -21615.136164 eV Core-core repulsion = 18560.868377 eV Total energy + Delta-G solvation = -3054.267787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92595 -37.76769 -36.63514 -34.41517 -32.28023 -31.97987 -30.31758 -27.79536 -26.52432 -25.85757 -25.45162 -24.24735 -21.32694 -21.18165 -20.10061 -19.17871 -17.40324 -16.86839 -15.91437 -15.52035 -15.06345 -14.76353 -14.46730 -14.08541 -13.82616 -13.58561 -13.21777 -12.99792 -12.95313 -12.85715 -12.32161 -12.10873 -11.89315 -11.71118 -11.63318 -11.23710 -11.12827 -10.93045 -10.87526 -10.58409 -10.54677 -10.31959 -9.76479 -9.47065 -9.41214 -9.00235 -8.79999 -8.14443 -8.12041 -6.61743 -6.20385 -4.18140 1.67068 2.00964 3.25143 3.32334 3.36038 3.78889 4.19310 4.32993 4.42579 4.90943 5.18966 5.29158 5.33667 5.36330 5.43940 5.47171 5.56957 5.64111 5.79438 5.86996 5.90415 5.91339 5.97454 6.03986 6.19091 6.23619 6.28318 6.44077 6.53437 6.56059 6.59049 6.78821 6.84766 6.87954 6.94972 7.03418 7.10310 7.25624 7.47820 7.81181 7.85166 8.13298 8.28167 8.52472 8.77978 9.41277 10.84039 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.005224 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.518080 B = 5358.156545 C = 5673.096391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.337 6.337 3 C 0.135 3.865 4 C -0.183 4.183 5 C -0.095 4.095 6 C -0.062 4.062 7 C -0.199 4.199 8 C 0.244 3.756 9 N -0.719 5.719 10 C 0.149 3.851 11 C 0.041 3.959 12 C -0.494 4.494 13 H 0.061 0.939 14 C 0.078 3.922 15 N -0.867 5.867 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.209 4.209 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.099 4.099 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.397 0.603 33 H 0.025 0.975 34 H 0.108 0.892 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 -6.859 -6.115 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.254 6.254 3 C 0.091 3.909 4 C -0.186 4.186 5 C -0.152 4.152 6 C -0.081 4.081 7 C -0.222 4.222 8 C 0.135 3.865 9 N -0.343 5.343 10 C 0.026 3.974 11 C 0.040 3.960 12 C -0.531 4.531 13 H 0.079 0.921 14 C -0.126 4.126 15 N -0.503 5.503 16 Si 0.710 3.290 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.247 4.247 21 C -0.229 4.229 22 C -0.199 4.199 23 C -0.156 4.156 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.232 0.768 33 H 0.044 0.956 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.221 -6.703 -6.219 13.714 hybrid contribution 0.603 -0.416 0.562 0.924 sum -9.618 -7.119 -5.657 13.236 Atomic orbital electron populations 1.22872 0.79759 1.02377 1.00513 1.85911 1.19239 1.25872 1.94382 1.17921 0.96643 0.85128 0.91173 1.19677 1.07930 0.96736 0.94297 1.20466 1.00422 1.00302 0.93973 1.20566 0.96659 0.93592 0.97303 1.20741 1.07891 1.02714 0.90869 1.17585 0.91185 0.90370 0.87377 1.45075 1.67305 1.17424 1.04494 1.21199 0.97539 0.79812 0.98865 1.19101 0.92614 0.94459 0.89823 1.20429 0.92418 1.42052 0.98169 0.92105 1.24870 0.97737 0.94371 0.95665 1.69989 1.32292 1.34843 1.13140 0.86803 0.81934 0.82065 0.78230 1.20035 1.21140 1.20174 1.22860 0.96554 1.05669 0.99608 1.22937 1.03802 0.92106 1.04064 1.19465 1.09143 0.96079 0.95224 1.20433 1.00782 1.00341 0.94030 0.89471 0.93776 0.93881 0.92838 0.92365 0.91900 0.86421 0.85587 0.76780 0.95635 0.87457 0.92604 0.91345 0.90556 0.91622 0.90145 0.92503 0.91503 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.13 101.05 1.12 1.56 16 2 O -0.34 -5.02 8.41 -19.42 -0.16 -5.19 16 3 C 0.14 2.23 5.66 -39.25 -0.22 2.01 16 4 C -0.18 -2.88 5.90 -104.43 -0.62 -3.50 16 5 C -0.09 -1.19 9.79 36.01 0.35 -0.83 16 6 C -0.06 -1.00 9.69 -39.63 -0.38 -1.39 16 7 C -0.20 -3.66 9.29 -39.35 -0.37 -4.02 16 8 C 0.24 4.64 6.63 -83.81 -0.56 4.09 16 9 N -0.72 -14.41 5.60 -58.65 -0.33 -14.74 16 10 C 0.15 3.30 4.75 -4.04 -0.02 3.28 16 11 C 0.04 0.95 1.69 -155.62 -0.26 0.69 16 12 C -0.49 -12.84 8.96 -34.44 -0.31 -13.14 16 13 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 14 C 0.08 2.03 5.06 -17.82 -0.09 1.94 16 15 N -0.87 -23.26 11.26 55.43 0.62 -22.63 16 16 Si 0.88 20.63 29.59 -169.99 -5.03 15.60 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.21 -4.30 9.83 -26.74 -0.26 -4.56 16 21 C -0.19 -4.17 9.89 -26.70 -0.26 -4.43 16 22 C -0.19 -3.38 5.91 -104.28 -0.62 -3.99 16 23 C -0.10 -1.51 9.32 36.00 0.34 -1.17 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.13 2.38 6.64 -52.48 -0.35 2.03 16 32 H 0.40 7.74 6.49 -40.82 -0.26 7.48 16 33 H 0.03 0.55 7.95 -51.93 -0.41 0.14 16 34 H 0.11 2.67 4.97 -51.93 -0.26 2.41 16 35 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.96 7.37 -51.93 -0.38 0.58 16 42 H 0.06 0.98 6.76 -51.93 -0.35 0.63 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -27.17 342.93 -8.49 -35.66 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.60 Total: 9.61 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -2.15 Total: -23.47 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.30 Total: -37.37 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.16 Total: -5.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.17 -8.49 -35.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594701099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.406 kcal (2) G-P(sol) polarization free energy of solvation -27.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds