Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99916 * 2 1 4 4 C 1.38811 * 120.01912 * 269.97877 * 3 2 1 5 5 C 1.50703 * 119.95462 * 0.02562 * 4 3 2 6 6 C 1.38170 * 120.09483 * 180.02562 * 4 3 2 7 7 C 1.38166 * 120.12471 * 359.74571 * 6 4 3 8 8 C 1.38933 * 120.03443 * 0.50728 * 7 6 4 9 9 N 1.39664 * 120.04281 * 179.76785 * 8 7 6 10 10 C 1.46490 * 120.00450 * 4.94249 * 9 8 7 11 11 C 1.53005 * 109.47407 * 184.38528 * 10 9 8 12 12 C 1.50700 * 115.55006 * 80.49990 * 11 10 9 13 13 H 1.07999 * 120.00158 * 219.68106 * 12 11 10 14 14 C 1.37878 * 119.99891 * 39.67241 * 12 11 10 15 15 N 1.31510 * 120.00303 * 19.64442 * 14 12 11 16 16 Si 1.86805 * 119.99750 * 199.64386 * 14 12 11 17 17 H 1.48496 * 109.46951 * 60.00524 * 16 14 12 18 18 H 1.48505 * 109.47102 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47454 * 299.99971 * 16 14 12 20 20 C 1.52996 * 117.49721 * 294.82703 * 11 10 9 21 21 C 1.52992 * 60.03219 * 252.49840 * 20 11 10 22 22 C 1.38573 * 120.01526 * 90.00039 * 3 2 1 23 23 C 1.50697 * 120.06590 * 359.95895 * 22 3 2 24 24 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47377 * 299.99486 * 1 2 3 26 26 H 1.09002 * 109.47555 * 59.99893 * 1 2 3 27 27 H 1.08995 * 109.47379 * 89.99947 * 5 4 3 28 28 H 1.09002 * 109.47101 * 209.99798 * 5 4 3 29 29 H 1.09000 * 109.46704 * 329.99727 * 5 4 3 30 30 H 1.07999 * 119.94198 * 180.02562 * 6 4 3 31 31 H 1.08003 * 119.98310 * 180.27622 * 7 6 4 32 32 H 0.97010 * 119.99727 * 184.94539 * 9 8 7 33 33 H 1.09006 * 109.47329 * 64.38316 * 10 9 8 34 34 H 1.08999 * 109.47390 * 304.38658 * 10 9 8 35 35 H 0.97000 * 120.00233 * 184.93248 * 15 14 12 36 36 H 1.08997 * 117.49900 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.49644 * 144.99738 * 20 11 10 38 38 H 1.08999 * 117.49892 * 107.50477 * 21 20 11 39 39 H 1.09002 * 117.50196 * 252.52256 * 21 20 11 40 40 H 1.09001 * 109.46936 * 264.72480 * 23 22 3 41 41 H 1.09001 * 109.47218 * 24.72045 * 23 22 3 42 42 H 1.08996 * 109.47664 * 144.72599 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3616 1.8294 -1.2019 5 6 2.0192 1.1576 -2.5067 6 6 2.9893 3.0603 -1.2037 7 6 3.3002 3.6819 -0.0096 8 6 2.9914 3.0652 1.1964 9 7 3.3100 3.6912 2.4036 10 6 3.8707 5.0446 2.4013 11 6 4.2286 5.4508 3.8324 12 6 5.5377 4.9148 4.3520 13 1 5.6138 4.5725 5.3735 14 6 6.6383 4.8612 3.5233 15 7 6.6821 5.6046 2.4393 16 14 8.0673 3.7326 3.9402 17 1 7.5894 2.3277 3.9930 18 1 9.1185 3.8595 2.8988 19 1 8.6305 4.1139 5.2602 20 6 3.0803 5.6016 4.8321 21 6 3.7989 6.8433 4.3006 22 6 2.3606 1.8285 1.1999 23 6 2.0186 1.1592 2.5060 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.0212 1.4624 -2.8214 28 1 2.7445 1.4486 -3.2666 29 1 2.0443 0.0757 -2.3758 30 1 3.2334 3.5395 -2.1403 31 1 3.7869 4.6461 -0.0137 32 1 3.1599 3.2298 3.2436 33 1 3.1358 5.7417 1.9988 34 1 4.7679 5.0652 1.7827 35 1 7.4226 5.5149 1.8192 36 1 2.0699 5.4111 4.4704 37 1 3.2717 5.3131 5.8656 38 1 3.2613 7.4701 3.5892 39 1 4.4634 7.3716 4.9844 40 1 1.0618 1.5359 2.8677 41 1 1.9513 0.0817 2.3555 42 1 2.7950 1.3758 3.2397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594701099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -8.195410 kcal Electronic energy + Delta-G solvation = -21615.697526 eV Core-core repulsion = 18560.868377 eV Total energy + Delta-G solvation = -3054.829148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17977 -39.23190 -38.10446 -35.77508 -34.24491 -33.32299 -31.55881 -28.83870 -28.10681 -27.38247 -26.84509 -25.66535 -22.98617 -22.55667 -21.37912 -20.95987 -18.80852 -18.37598 -17.43077 -16.72653 -16.67435 -16.32074 -15.83811 -15.61505 -15.30427 -14.94602 -14.52885 -14.34302 -14.18601 -14.00046 -13.85118 -13.57156 -13.31967 -12.98611 -12.84730 -12.79966 -12.74140 -12.45350 -12.33767 -12.25808 -12.11305 -11.81547 -11.31616 -11.19308 -10.80787 -10.62630 -10.50289 -10.01082 -9.41558 -8.25010 -7.99562 -6.19980 0.38376 0.70221 1.37300 1.42463 1.47362 2.39471 2.54665 2.74072 2.98556 3.17537 3.64148 3.98754 4.12260 4.19262 4.21882 4.46637 4.50620 4.51110 4.56004 4.64421 4.69102 4.71335 4.75348 4.78257 4.80450 4.82803 4.91140 4.91700 4.98782 5.08502 5.20604 5.21551 5.38142 5.51493 5.53453 5.55322 5.58365 5.76026 5.82720 5.89212 6.34776 6.58427 6.70082 6.76472 7.07157 7.40129 8.84552 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.005224 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.518080 B = 5358.156545 C = 5673.096391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.348 6.348 3 C 0.131 3.869 4 C -0.183 4.183 5 C -0.092 4.092 6 C -0.063 4.063 7 C -0.219 4.219 8 C 0.220 3.780 9 N -0.724 5.724 10 C 0.167 3.833 11 C 0.012 3.988 12 C -0.507 4.507 13 H 0.052 0.948 14 C 0.039 3.961 15 N -0.888 5.888 16 Si 0.932 3.068 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.182 4.182 21 C -0.193 4.193 22 C -0.203 4.203 23 C -0.093 4.093 24 H 0.115 0.885 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.111 0.889 32 H 0.397 0.603 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.262 0.738 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 -8.280 -6.867 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.265 6.265 3 C 0.087 3.913 4 C -0.186 4.186 5 C -0.148 4.148 6 C -0.082 4.082 7 C -0.242 4.242 8 C 0.113 3.887 9 N -0.350 5.350 10 C 0.043 3.957 11 C 0.011 3.989 12 C -0.544 4.544 13 H 0.070 0.930 14 C -0.162 4.162 15 N -0.525 5.525 16 Si 0.759 3.241 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.219 4.219 21 C -0.232 4.232 22 C -0.209 4.209 23 C -0.150 4.150 24 H 0.133 0.867 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.232 0.768 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.655 -8.141 -6.981 15.838 hybrid contribution 0.954 -0.041 0.738 1.207 sum -10.701 -8.182 -6.243 14.847 Atomic orbital electron populations 1.23138 0.77488 1.04433 1.01015 1.85883 1.21340 1.24838 1.94415 1.18084 0.96541 0.85507 0.91118 1.20101 1.06452 0.96377 0.95635 1.20511 1.01846 1.00013 0.92461 1.20833 0.96067 0.93863 0.97407 1.20805 1.08871 1.02613 0.91888 1.17792 0.92495 0.91347 0.87077 1.44864 1.68342 1.16821 1.04983 1.20781 0.96312 0.81073 0.97572 1.19173 0.92914 0.95668 0.91135 1.20658 0.93757 1.42110 0.97889 0.92979 1.25423 0.99627 0.95369 0.95819 1.70078 1.32820 1.35785 1.13821 0.86017 0.79732 0.80337 0.78058 1.20329 1.21103 1.19668 1.22837 0.96505 1.03530 0.99075 1.22921 1.04017 0.92047 1.04184 1.19729 1.08816 0.95666 0.96672 1.20414 1.01119 1.00620 0.92874 0.86709 0.93688 0.92982 0.90996 0.90983 0.91772 0.84024 0.87139 0.76752 0.95661 0.90409 0.92833 0.89404 0.90128 0.90468 0.91139 0.91081 0.90721 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.13 113.37 1.26 1.89 16 2 O -0.35 -9.51 8.41 -92.41 -0.78 -10.29 16 3 C 0.13 4.13 5.66 22.49 0.13 4.26 16 4 C -0.18 -5.38 5.90 -19.74 -0.12 -5.50 16 5 C -0.09 -2.01 9.79 71.24 0.70 -1.31 16 6 C -0.06 -1.96 9.69 22.24 0.22 -1.74 16 7 C -0.22 -8.14 9.29 22.42 0.21 -7.93 16 8 C 0.22 8.42 6.63 38.20 0.25 8.68 16 9 N -0.72 -29.43 5.60 -339.48 -1.90 -31.33 16 10 C 0.17 7.55 4.75 86.38 0.41 7.96 16 11 C 0.01 0.56 1.69 -52.90 -0.09 0.47 16 12 C -0.51 -26.69 8.96 25.60 0.23 -26.46 16 13 H 0.05 2.75 7.89 -2.91 -0.02 2.73 16 14 C 0.04 2.09 5.06 84.66 0.43 2.52 16 15 N -0.89 -48.76 11.26 21.45 0.24 -48.51 16 16 Si 0.93 42.84 29.59 68.60 2.03 44.87 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 C -0.18 -7.28 9.83 30.59 0.30 -6.98 16 21 C -0.19 -8.40 9.89 30.61 0.30 -8.10 16 22 C -0.20 -6.95 5.91 -19.64 -0.12 -7.07 16 23 C -0.09 -2.75 9.32 71.24 0.66 -2.08 16 24 H 0.11 1.53 8.14 -2.38 -0.02 1.52 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 29 H 0.06 1.41 7.52 -2.39 -0.02 1.39 16 30 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.11 4.37 6.64 -2.91 -0.02 4.35 16 32 H 0.40 15.62 6.49 -92.70 -0.60 15.02 16 33 H 0.03 1.11 7.95 -2.38 -0.02 1.09 16 34 H 0.08 4.01 4.97 -2.39 -0.01 4.00 16 35 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.08 3.13 8.08 -2.39 -0.02 3.12 16 39 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.04 7.37 -2.39 -0.02 2.02 16 42 H 0.05 1.66 6.76 -2.39 -0.02 1.64 16 Total: -1.00 -58.02 342.93 4.78 -53.25 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.41 Total: 33.42 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 4.78 Total: -41.40 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -1.66 Total: -79.84 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.78 Total: -10.29 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -58.02 4.78 -53.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594701099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.052 kcal (2) G-P(sol) polarization free energy of solvation -58.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds