Wall clock time and date at job start Mon Mar 30 2020 01:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35895 * 116.99842 * 2 1 4 4 C 1.38810 * 120.02114 * 359.97438 * 3 2 1 5 5 C 1.38168 * 120.09493 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.93614 * 180.02562 * 5 4 3 7 7 C 1.38156 * 120.12798 * 359.74865 * 5 4 3 8 8 C 1.38931 * 120.03486 * 0.50588 * 7 5 4 9 9 N 1.39662 * 120.04694 * 179.76577 * 8 7 5 10 10 C 1.46499 * 120.00425 * 354.61559 * 9 8 7 11 11 C 1.52992 * 109.47584 * 184.88902 * 10 9 8 12 12 C 1.50697 * 115.54911 * 80.63221 * 11 10 9 13 13 H 1.08006 * 120.00234 * 269.07475 * 12 11 10 14 14 C 1.37879 * 119.99971 * 89.07591 * 12 11 10 15 15 N 1.31519 * 120.00007 * 175.93915 * 14 12 11 16 16 Si 1.86799 * 120.00050 * 355.94496 * 14 12 11 17 17 H 1.48508 * 109.46961 * 89.77255 * 16 14 12 18 18 H 1.48500 * 109.47007 * 209.77039 * 16 14 12 19 19 H 1.48500 * 109.47189 * 329.77321 * 16 14 12 20 20 C 1.53006 * 117.50045 * 294.96310 * 11 10 9 21 21 C 1.53000 * 60.03212 * 252.49819 * 20 11 10 22 22 C 1.38578 * 120.01648 * 180.02562 * 3 2 1 23 23 C 1.50696 * 120.05984 * 359.97438 * 22 3 2 24 24 H 1.08999 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46711 * 300.00084 * 1 2 3 26 26 H 1.09000 * 109.47043 * 59.99677 * 1 2 3 27 27 H 1.08006 * 119.95405 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.46964 * 90.00197 * 6 5 4 29 29 H 1.09000 * 109.47432 * 209.99888 * 6 5 4 30 30 H 1.08996 * 109.47575 * 330.00482 * 6 5 4 31 31 H 1.08004 * 119.98331 * 180.27602 * 7 5 4 32 32 H 0.97005 * 120.00401 * 174.61532 * 9 8 7 33 33 H 1.09009 * 109.46986 * 64.88860 * 10 9 8 34 34 H 1.09003 * 109.47275 * 304.89610 * 10 9 8 35 35 H 0.96997 * 120.00000 * 179.97438 * 15 14 12 36 36 H 1.09003 * 117.49681 * 0.02562 * 20 11 10 37 37 H 1.08999 * 117.50063 * 144.99528 * 20 11 10 38 38 H 1.08997 * 117.49912 * 107.50228 * 21 20 11 39 39 H 1.09010 * 117.49970 * 252.52338 * 21 20 11 40 40 H 1.09001 * 109.47226 * 273.32676 * 23 22 3 41 41 H 1.09001 * 109.47613 * 33.33319 * 23 22 3 42 42 H 1.09007 * 109.46779 * 153.33377 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9160 3.6072 -0.0011 6 6 1.0922 4.8691 -0.0011 7 6 3.2954 3.6844 0.0042 8 6 4.0570 2.5224 -0.0006 9 7 5.4514 2.6002 -0.0003 10 6 6.1125 3.9026 -0.1139 11 6 7.6258 3.6997 -0.2111 12 6 8.1452 3.3261 -1.5756 13 1 8.2372 2.2861 -1.8522 14 6 8.5028 4.3118 -2.4708 15 7 9.0306 3.9867 -3.6307 16 14 8.2379 6.1091 -2.0361 17 1 9.4445 6.6352 -1.3485 18 1 7.9962 6.8881 -3.2770 19 1 7.0624 6.2329 -1.1371 20 6 8.3380 3.1018 1.0039 21 6 8.5156 4.5835 0.6666 22 6 3.4299 1.2838 -0.0005 23 6 4.2523 0.0211 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2118 2.3182 -0.0005 28 1 0.8940 5.1736 1.0267 29 1 1.6385 5.6598 -0.5153 30 1 0.1481 4.6867 -0.5144 31 1 3.7820 4.6486 0.0082 32 1 5.9823 1.7918 0.0752 33 1 5.8824 4.5048 0.7651 34 1 5.7563 4.4141 -1.0081 35 1 9.2819 4.6802 -4.2606 36 1 7.7282 2.8525 1.8724 37 1 9.1821 2.4382 0.8164 38 1 8.0229 5.3095 1.3133 39 1 9.4766 4.8947 0.2567 40 1 4.4010 -0.3157 1.0254 41 1 3.7310 -0.7522 -0.5648 42 1 5.2200 0.2178 -0.4622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594707409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:55 Heat of formation + Delta-G solvation = 5.119328 kcal Electronic energy + Delta-G solvation = -21373.945550 eV Core-core repulsion = 18319.693772 eV Total energy + Delta-G solvation = -3054.251778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09513 -38.13831 -37.02887 -34.65950 -32.61505 -32.10637 -29.00104 -28.73951 -27.51826 -26.37694 -25.11368 -24.10690 -21.78346 -21.24750 -20.42968 -19.06925 -17.33083 -16.84575 -16.00525 -15.66873 -15.40734 -15.08882 -14.91965 -14.44636 -13.87979 -13.69663 -13.24165 -13.18628 -12.94226 -12.69019 -12.63147 -12.46924 -12.23439 -11.76699 -11.68776 -11.64374 -11.20203 -11.07947 -10.91366 -10.73931 -10.58922 -10.47951 -10.15358 -9.70752 -9.44779 -8.99390 -8.63706 -8.63000 -7.79533 -6.88724 -6.15563 -4.19198 1.73990 1.98057 3.25550 3.33162 3.35855 3.38768 4.06755 4.12895 4.37632 4.89218 4.95026 5.11949 5.13260 5.14501 5.24949 5.31762 5.44024 5.44941 5.63876 5.68319 5.73089 5.84453 5.87942 6.00295 6.01416 6.01854 6.04869 6.08994 6.18342 6.35700 6.40586 6.51006 6.60604 6.66422 6.77160 6.92368 6.95503 7.02788 7.07305 7.64531 7.67262 7.90012 8.33246 8.42813 8.86515 9.46879 10.96266 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.004890 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.289638 B = 5724.222767 C = 6162.827411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.170 3.830 4 C -0.276 4.276 5 C -0.010 4.010 6 C -0.112 4.112 7 C -0.233 4.233 8 C 0.267 3.733 9 N -0.717 5.717 10 C 0.158 3.842 11 C -0.013 4.013 12 C -0.488 4.488 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.895 5.895 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.294 1.294 19 H -0.261 1.261 20 C -0.179 4.179 21 C -0.193 4.193 22 C -0.208 4.208 23 C -0.092 4.092 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.402 0.598 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 -2.479 8.879 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.230 6.230 3 C 0.124 3.876 4 C -0.297 4.297 5 C -0.011 4.011 6 C -0.169 4.169 7 C -0.256 4.256 8 C 0.159 3.841 9 N -0.343 5.343 10 C 0.034 3.966 11 C -0.014 4.014 12 C -0.525 4.525 13 H 0.095 0.905 14 C -0.124 4.124 15 N -0.532 5.532 16 Si 0.709 3.291 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.185 1.185 20 C -0.216 4.216 21 C -0.231 4.231 22 C -0.214 4.214 23 C -0.149 4.149 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.239 0.761 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.924 -2.396 8.667 17.424 hybrid contribution -0.095 0.948 0.066 0.955 sum -15.019 -1.449 8.733 17.434 Atomic orbital electron populations 1.22960 0.79103 1.03185 1.01185 1.86022 1.20728 1.27487 1.88787 1.18375 0.91021 0.83567 0.94611 1.20614 0.98880 0.91679 1.18492 1.19287 0.93104 0.94109 0.94588 1.20776 0.99076 0.95085 1.01981 1.20403 0.92912 0.97117 1.15137 1.17386 0.84351 0.92135 0.90249 1.44926 1.01672 1.09812 1.77884 1.21274 0.92787 0.83601 0.98903 1.19612 0.88726 1.00309 0.92783 1.20208 1.42861 0.94982 0.94467 0.90459 1.24978 0.93798 0.99042 0.94623 1.69893 1.41371 1.33749 1.08204 0.86819 0.79524 0.85155 0.77588 1.20352 1.22047 1.18498 1.22810 1.03655 0.95700 0.99460 1.22978 1.02520 0.93087 1.04504 1.18455 0.90737 0.94398 1.17824 1.20349 0.98776 0.94495 1.01286 0.88815 0.92969 0.92893 0.86522 0.91345 0.91506 0.91897 0.86205 0.76098 0.94616 0.91889 0.92489 0.90845 0.89390 0.90806 0.89143 0.92488 0.91739 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.44 9.60 -19.41 -0.19 -4.63 16 3 C 0.17 2.67 6.66 -39.24 -0.26 2.41 16 4 C -0.28 -3.97 8.69 -39.40 -0.34 -4.31 16 5 C -0.01 -0.15 5.87 -104.68 -0.61 -0.76 16 6 C -0.11 -1.28 10.01 36.01 0.36 -0.92 16 7 C -0.23 -3.94 8.95 -39.35 -0.35 -4.29 16 8 C 0.27 4.79 6.62 -83.82 -0.56 4.23 16 9 N -0.72 -13.41 5.56 -58.65 -0.33 -13.74 16 10 C 0.16 3.20 4.15 -4.05 -0.02 3.19 16 11 C -0.01 -0.29 0.83 -155.62 -0.13 -0.42 16 12 C -0.49 -13.07 9.41 -34.44 -0.32 -13.39 16 13 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 15 N -0.90 -26.74 13.96 55.43 0.77 -25.96 16 16 Si 0.88 21.13 24.86 -169.99 -4.23 16.91 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.26 -5.87 6.16 56.52 0.35 -5.52 16 20 C -0.18 -3.46 9.82 -26.73 -0.26 -3.72 16 21 C -0.19 -3.93 7.58 -26.69 -0.20 -4.13 16 22 C -0.21 -3.52 5.91 -104.28 -0.62 -4.14 16 23 C -0.09 -1.40 9.35 36.00 0.34 -1.06 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 27 H 0.12 1.38 6.29 -52.48 -0.33 1.05 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.12 2.01 6.75 -52.48 -0.35 1.65 16 32 H 0.40 7.36 6.39 -40.82 -0.26 7.10 16 33 H 0.04 0.67 7.78 -51.92 -0.40 0.27 16 34 H 0.06 1.39 7.15 -51.93 -0.37 1.01 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.09 1.95 7.22 -51.92 -0.37 1.57 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.94 7.64 -51.93 -0.40 0.55 16 42 H 0.06 0.96 6.46 -51.93 -0.34 0.63 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -29.70 335.82 -7.60 -37.30 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.61 Total: 9.02 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -2.09 Total: -23.96 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.45 Total: -39.70 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.19 Total: -4.63 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.23 Total: 16.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.70 -7.60 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594707409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.420 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds