Wall clock time and date at job start Mon Mar 30 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35895 * 116.99842 * 2 1 4 4 C 1.38810 * 120.02114 * 359.97438 * 3 2 1 5 5 C 1.38168 * 120.09493 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.93614 * 180.02562 * 5 4 3 7 7 C 1.38156 * 120.12798 * 359.74865 * 5 4 3 8 8 C 1.38931 * 120.03486 * 0.50588 * 7 5 4 9 9 N 1.39662 * 120.04694 * 179.76577 * 8 7 5 10 10 C 1.46499 * 120.00425 * 354.61559 * 9 8 7 11 11 C 1.52992 * 109.47584 * 184.88902 * 10 9 8 12 12 C 1.50697 * 115.54911 * 80.63221 * 11 10 9 13 13 H 1.08006 * 120.00234 * 269.07475 * 12 11 10 14 14 C 1.37879 * 119.99971 * 89.07591 * 12 11 10 15 15 N 1.31519 * 120.00007 * 175.93915 * 14 12 11 16 16 Si 1.86799 * 120.00050 * 355.94496 * 14 12 11 17 17 H 1.48508 * 109.46961 * 89.77255 * 16 14 12 18 18 H 1.48500 * 109.47007 * 209.77039 * 16 14 12 19 19 H 1.48500 * 109.47189 * 329.77321 * 16 14 12 20 20 C 1.53006 * 117.50045 * 294.96310 * 11 10 9 21 21 C 1.53000 * 60.03212 * 252.49819 * 20 11 10 22 22 C 1.38578 * 120.01648 * 180.02562 * 3 2 1 23 23 C 1.50696 * 120.05984 * 359.97438 * 22 3 2 24 24 H 1.08999 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46711 * 300.00084 * 1 2 3 26 26 H 1.09000 * 109.47043 * 59.99677 * 1 2 3 27 27 H 1.08006 * 119.95405 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.46964 * 90.00197 * 6 5 4 29 29 H 1.09000 * 109.47432 * 209.99888 * 6 5 4 30 30 H 1.08996 * 109.47575 * 330.00482 * 6 5 4 31 31 H 1.08004 * 119.98331 * 180.27602 * 7 5 4 32 32 H 0.97005 * 120.00401 * 174.61532 * 9 8 7 33 33 H 1.09009 * 109.46986 * 64.88860 * 10 9 8 34 34 H 1.09003 * 109.47275 * 304.89610 * 10 9 8 35 35 H 0.96997 * 120.00000 * 179.97438 * 15 14 12 36 36 H 1.09003 * 117.49681 * 0.02562 * 20 11 10 37 37 H 1.08999 * 117.50063 * 144.99528 * 20 11 10 38 38 H 1.08997 * 117.49912 * 107.50228 * 21 20 11 39 39 H 1.09010 * 117.49970 * 252.52338 * 21 20 11 40 40 H 1.09001 * 109.47226 * 273.32676 * 23 22 3 41 41 H 1.09001 * 109.47613 * 33.33319 * 23 22 3 42 42 H 1.09007 * 109.46779 * 153.33377 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9160 3.6072 -0.0011 6 6 1.0922 4.8691 -0.0011 7 6 3.2954 3.6844 0.0042 8 6 4.0570 2.5224 -0.0006 9 7 5.4514 2.6002 -0.0003 10 6 6.1125 3.9026 -0.1139 11 6 7.6258 3.6997 -0.2111 12 6 8.1452 3.3261 -1.5756 13 1 8.2372 2.2861 -1.8522 14 6 8.5028 4.3118 -2.4708 15 7 9.0306 3.9867 -3.6307 16 14 8.2379 6.1091 -2.0361 17 1 9.4445 6.6352 -1.3485 18 1 7.9962 6.8881 -3.2770 19 1 7.0624 6.2329 -1.1371 20 6 8.3380 3.1018 1.0039 21 6 8.5156 4.5835 0.6666 22 6 3.4299 1.2838 -0.0005 23 6 4.2523 0.0211 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2118 2.3182 -0.0005 28 1 0.8940 5.1736 1.0267 29 1 1.6385 5.6598 -0.5153 30 1 0.1481 4.6867 -0.5144 31 1 3.7820 4.6486 0.0082 32 1 5.9823 1.7918 0.0752 33 1 5.8824 4.5048 0.7651 34 1 5.7563 4.4141 -1.0081 35 1 9.2819 4.6802 -4.2606 36 1 7.7282 2.8525 1.8724 37 1 9.1821 2.4382 0.8164 38 1 8.0229 5.3095 1.3133 39 1 9.4766 4.8947 0.2567 40 1 4.4010 -0.3157 1.0254 41 1 3.7310 -0.7522 -0.5648 42 1 5.2200 0.2178 -0.4622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594707409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:54 Heat of formation + Delta-G solvation = -12.431052 kcal Electronic energy + Delta-G solvation = -21374.706592 eV Core-core repulsion = 18319.693772 eV Total energy + Delta-G solvation = -3055.012819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24229 -39.48780 -38.42953 -35.93028 -34.26943 -33.78999 -30.06648 -30.00015 -28.41848 -28.09978 -26.78211 -25.26816 -23.36834 -22.47647 -21.66119 -20.82394 -18.60148 -18.37911 -17.48422 -16.93826 -16.63284 -16.53043 -16.26498 -15.76183 -15.34993 -15.03637 -14.77056 -14.44804 -14.33797 -14.06347 -13.84489 -13.72186 -13.52197 -13.08168 -12.84989 -12.75008 -12.64282 -12.58358 -12.23517 -12.14365 -12.02768 -11.87543 -11.68865 -11.57280 -10.97163 -10.68589 -10.46421 -10.39044 -8.96033 -8.30170 -8.21917 -6.37417 0.55004 0.76293 1.35607 1.38884 1.50467 2.26560 2.36783 2.75775 2.91787 3.04856 3.30267 3.91848 4.02767 4.13226 4.22923 4.29729 4.34459 4.42143 4.45245 4.46327 4.51169 4.55279 4.69831 4.77703 4.80475 4.82421 4.83328 4.84547 4.87531 4.90950 5.07192 5.11108 5.34421 5.36338 5.41070 5.46997 5.55570 5.69033 5.76680 5.82367 6.26792 6.51046 6.59904 6.70052 6.93800 7.32273 8.85642 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.004890 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.289638 B = 5724.222767 C = 6162.827411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.332 6.332 3 C 0.165 3.835 4 C -0.272 4.272 5 C -0.012 4.012 6 C -0.111 4.111 7 C -0.252 4.252 8 C 0.246 3.754 9 N -0.725 5.725 10 C 0.172 3.828 11 C -0.038 4.038 12 C -0.484 4.484 13 H 0.030 0.970 14 C 0.020 3.980 15 N -0.950 5.950 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.301 1.301 19 H -0.234 1.234 20 C -0.159 4.159 21 C -0.186 4.186 22 C -0.231 4.231 23 C -0.086 4.086 24 H 0.118 0.882 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.146 0.854 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.400 0.600 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 -1.320 11.112 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.119 3.881 4 C -0.293 4.293 5 C -0.013 4.013 6 C -0.167 4.167 7 C -0.275 4.275 8 C 0.139 3.861 9 N -0.352 5.352 10 C 0.048 3.952 11 C -0.039 4.039 12 C -0.521 4.521 13 H 0.048 0.952 14 C -0.178 4.178 15 N -0.590 5.590 16 Si 0.765 3.235 17 H -0.190 1.190 18 H -0.228 1.228 19 H -0.157 1.157 20 C -0.196 4.196 21 C -0.224 4.224 22 C -0.236 4.236 23 C -0.143 4.143 24 H 0.136 0.864 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.164 0.836 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.236 0.764 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.569 -1.255 10.932 20.731 hybrid contribution 0.599 0.402 -0.643 0.966 sum -16.971 -0.853 10.289 19.864 Atomic orbital electron populations 1.23307 0.76637 1.05262 1.02169 1.86007 1.23269 1.26798 1.88455 1.18530 0.90861 0.84713 0.94023 1.20972 1.00341 0.91014 1.16939 1.19711 0.92664 0.95830 0.93061 1.20840 0.99241 0.93285 1.03334 1.20574 0.94051 0.96648 1.16233 1.17604 0.83941 0.93065 0.91462 1.44821 1.02193 1.09086 1.79142 1.20958 0.91111 0.84449 0.98705 1.19457 0.90094 1.03270 0.91078 1.20375 1.41909 0.92799 0.97050 0.95195 1.25845 0.93685 1.03874 0.94356 1.70053 1.43867 1.35190 1.09850 0.85860 0.80797 0.79291 0.77586 1.19043 1.22805 1.15669 1.22811 1.02857 0.95203 0.98756 1.23043 1.01396 0.94159 1.03754 1.18700 0.91867 0.94481 1.18577 1.20293 0.97979 0.94210 1.01818 0.86411 0.91665 0.92071 0.83635 0.89658 0.91506 0.89981 0.86478 0.76388 0.92416 0.94312 0.92633 0.87928 0.90299 0.87642 0.90538 0.91437 0.91545 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.67 9.60 -92.37 -0.89 -9.56 16 3 C 0.16 4.92 6.66 22.49 0.15 5.07 16 4 C -0.27 -7.12 8.69 22.39 0.19 -6.93 16 5 C -0.01 -0.32 5.87 -19.90 -0.12 -0.44 16 6 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 7 C -0.25 -8.27 8.95 22.42 0.20 -8.07 16 8 C 0.25 8.75 6.62 38.20 0.25 9.00 16 9 N -0.73 -27.18 5.56 -339.48 -1.89 -29.07 16 10 C 0.17 6.81 4.15 86.38 0.36 7.17 16 11 C -0.04 -1.64 0.83 -52.90 -0.04 -1.69 16 12 C -0.48 -26.84 9.41 25.60 0.24 -26.60 16 13 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 14 C 0.02 1.13 5.47 84.65 0.46 1.59 16 15 N -0.95 -59.28 13.96 21.45 0.30 -58.99 16 16 Si 0.94 43.61 24.86 68.60 1.71 45.32 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.23 -9.75 6.16 99.48 0.61 -9.14 16 20 C -0.16 -5.89 9.82 30.60 0.30 -5.59 16 21 C -0.19 -7.11 7.58 30.62 0.23 -6.88 16 22 C -0.23 -7.72 5.91 -19.64 -0.12 -7.84 16 23 C -0.09 -2.64 9.35 71.23 0.67 -1.97 16 24 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 0.87 7.66 -2.39 -0.02 0.86 16 26 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 27 H 0.15 2.87 6.29 -2.91 -0.02 2.85 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 30 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 31 H 0.12 3.80 6.75 -2.91 -0.02 3.78 16 32 H 0.40 14.94 6.39 -92.70 -0.59 14.35 16 33 H 0.06 2.02 7.78 -2.38 -0.02 2.00 16 34 H 0.04 1.69 7.15 -2.39 -0.02 1.68 16 35 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.11 3.40 8.08 -2.39 -0.02 3.38 16 39 H 0.08 3.15 7.22 -2.38 -0.02 3.14 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 1.95 7.64 -2.39 -0.02 1.93 16 42 H 0.05 1.60 6.46 -2.38 -0.02 1.58 16 Total: -1.00 -66.90 335.82 4.16 -62.74 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.32 Total: 32.72 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 4.61 Total: -43.16 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -1.59 Total: -88.06 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.89 Total: -9.56 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.71 Total: 45.32 kcal Total: -66.90 4.16 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594707409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.306 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds