Wall clock time and date at job start Mon Mar 30 2020 01:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.99334 * 2 1 4 4 C 1.54106 * 109.87866 * 238.91813 * 2 1 3 5 5 C 1.54805 * 104.18735 * 242.60254 * 4 2 1 6 6 H 1.08997 * 110.94095 * 262.67144 * 5 4 2 7 7 N 1.46501 * 110.90831 * 139.07635 * 5 4 2 8 8 C 1.36941 * 119.99900 * 305.84566 * 7 5 4 9 9 H 1.07993 * 119.99910 * 36.52095 * 8 7 5 10 10 C 1.38816 * 119.99599 * 216.52378 * 8 7 5 11 11 N 1.31623 * 119.99570 * 213.85717 * 10 8 7 12 12 Si 1.86800 * 120.00312 * 33.85663 * 10 8 7 13 13 H 1.48505 * 109.46845 * 95.09906 * 12 10 8 14 14 H 1.48501 * 109.47029 * 215.09831 * 12 10 8 15 15 H 1.48496 * 109.46885 * 335.09976 * 12 10 8 16 16 C 1.46504 * 120.00118 * 125.84156 * 7 5 4 17 17 C 1.50695 * 109.46900 * 275.77240 * 16 7 5 18 18 C 1.38241 * 119.99922 * 274.18958 * 17 16 7 19 19 C 1.38234 * 119.99780 * 179.79173 * 18 17 16 20 20 C 1.38240 * 119.99918 * 0.44055 * 19 18 17 21 21 C 1.38229 * 120.00329 * 359.81267 * 20 19 18 22 22 C 1.38233 * 120.00087 * 94.46449 * 17 16 7 23 23 C 1.55002 * 102.09515 * 20.88081 * 5 4 2 24 24 O 1.43741 * 109.88044 * 121.08334 * 2 1 3 25 25 H 1.09002 * 109.46822 * 300.37063 * 1 2 3 26 26 H 1.09004 * 109.46973 * 60.36701 * 1 2 3 27 27 H 1.08995 * 109.46983 * 180.36921 * 1 2 3 28 28 H 1.08993 * 109.47317 * 179.63369 * 3 2 1 29 29 H 1.08999 * 109.46856 * 299.63303 * 3 2 1 30 30 H 1.08999 * 109.46651 * 59.63006 * 3 2 1 31 31 H 1.09000 * 110.48516 * 123.92743 * 4 2 1 32 32 H 1.08997 * 110.48800 * 1.28239 * 4 2 1 33 33 H 0.97003 * 119.99890 * 179.97438 * 11 10 8 34 34 H 1.08994 * 109.46875 * 35.77203 * 16 7 5 35 35 H 1.08996 * 109.46797 * 155.77063 * 16 7 5 36 36 H 1.08000 * 119.99950 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.00339 * 180.27411 * 19 18 17 38 38 H 1.08007 * 119.99723 * 179.83669 * 20 19 18 39 39 H 1.07996 * 120.00169 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.99889 * 359.97438 * 22 17 16 41 41 H 1.09003 * 110.61623 * 81.47310 * 23 5 4 42 42 H 1.08997 * 110.61976 * 204.47483 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0540 -0.7482 -1.2412 5 6 2.8325 -1.9523 -0.6577 6 1 3.9004 -1.7396 -0.6100 7 7 2.5781 -3.1665 -1.4370 8 6 1.2920 -3.5835 -1.6547 9 1 0.5087 -2.8574 -1.8141 10 6 0.9954 -4.9395 -1.6704 11 7 0.0564 -5.3985 -2.4704 12 14 1.9288 -6.1128 -0.5562 13 1 1.1598 -6.3228 0.6968 14 1 2.1112 -7.4136 -1.2490 15 1 3.2574 -5.5348 -0.2307 16 6 3.6996 -3.9346 -1.9836 17 6 4.1264 -3.3340 -3.2981 18 6 3.4925 -3.7094 -4.4678 19 6 3.8812 -3.1552 -5.6731 20 6 4.9098 -2.2324 -5.7098 21 6 5.5472 -1.8609 -4.5409 22 6 5.1556 -2.4119 -3.3350 23 6 2.2282 -2.0714 0.7647 24 8 2.0188 -0.6979 1.1577 25 1 -0.3633 0.5196 0.8867 26 1 -0.3633 0.5081 -0.8933 27 1 -0.3633 -1.0276 0.0066 28 1 3.1430 1.4280 0.0066 29 1 1.6998 1.9530 -0.8933 30 1 1.6891 1.9569 0.8867 31 1 2.7197 -0.1078 -1.8198 32 1 1.2238 -1.0930 -1.8575 33 1 -0.1507 -6.3461 -2.4817 34 1 4.5344 -3.9068 -1.2833 35 1 3.3904 -4.9680 -2.1396 36 1 2.6917 -4.4334 -4.4396 37 1 3.3830 -3.4452 -6.5865 38 1 5.2152 -1.8014 -6.6519 39 1 6.3506 -1.1397 -4.5696 40 1 5.6536 -2.1216 -2.4217 41 1 1.2814 -2.6108 0.7355 42 1 2.9296 -2.5612 1.4400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595638804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:58 Heat of formation + Delta-G solvation = -14.488370 kcal Electronic energy + Delta-G solvation = -22363.486675 eV Core-core repulsion = 19308.384643 eV Total energy + Delta-G solvation = -3055.102031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88310 -39.92211 -37.25211 -33.94526 -33.89625 -32.78081 -31.62255 -30.41022 -28.27864 -27.31719 -26.60423 -25.07412 -23.26974 -22.19078 -21.50498 -20.87230 -18.73503 -17.46793 -17.15637 -17.01787 -16.52365 -15.98931 -15.91358 -15.66412 -15.22303 -14.84864 -14.61165 -14.20811 -14.10512 -14.07459 -13.81870 -13.57075 -13.22717 -13.07082 -12.78562 -12.72046 -12.65477 -12.46633 -12.34866 -12.17352 -11.86561 -11.76557 -11.54541 -11.39579 -11.28633 -10.56219 -10.49744 -9.66844 -9.49270 -8.75392 -8.24046 -5.46927 0.60701 0.65815 1.33645 1.44802 1.50065 2.44528 2.77195 3.04877 3.12842 3.54726 3.88299 3.98406 4.07230 4.08559 4.20230 4.28001 4.30804 4.38821 4.40227 4.49024 4.53461 4.73573 4.76523 4.82306 4.83260 4.91389 4.95947 4.97096 5.01048 5.05211 5.18377 5.27634 5.29133 5.31864 5.33676 5.48000 5.70563 5.75341 5.89735 5.98502 6.10975 6.25374 6.30298 6.99668 7.65775 8.08940 8.94949 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.009025 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.744152 B = 3101.874556 C = 4554.792552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.094 3.906 3 C -0.132 4.132 4 C -0.148 4.148 5 C 0.147 3.853 6 H 0.090 0.910 7 N -0.586 5.586 8 C -0.248 4.248 9 H 0.043 0.957 10 C 0.003 3.997 11 N -0.922 5.922 12 Si 0.895 3.105 13 H -0.299 1.299 14 H -0.301 1.301 15 H -0.238 1.238 16 C 0.178 3.822 17 C -0.100 4.100 18 C -0.119 4.119 19 C -0.133 4.133 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.121 4.121 23 C 0.036 3.964 24 O -0.385 6.385 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.043 0.957 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 10.392 -0.608 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.187 4.187 5 C 0.040 3.960 6 H 0.108 0.892 7 N -0.307 5.307 8 C -0.377 4.377 9 H 0.061 0.939 10 C -0.195 4.195 11 N -0.564 5.564 12 Si 0.722 3.278 13 H -0.227 1.227 14 H -0.228 1.228 15 H -0.161 1.161 16 C 0.054 3.946 17 C -0.102 4.102 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.042 4.042 24 O -0.305 6.305 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.150 0.850 41 H 0.062 0.938 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.399 10.351 -0.434 14.678 hybrid contribution -0.717 -1.541 0.243 1.717 sum 9.682 8.809 -0.191 13.091 Atomic orbital electron populations 1.22182 0.95529 1.01215 1.02496 1.22186 0.93488 0.93955 0.84895 1.21838 1.01715 0.92426 1.02932 1.23224 1.00721 0.97407 0.97372 1.22024 0.98135 0.86425 0.89420 0.89241 1.44018 1.01787 1.27234 1.57632 1.18275 0.85884 0.90163 1.43413 0.93937 1.25819 0.96971 0.98365 0.98390 1.70156 1.36570 1.14368 1.35290 0.86571 0.81229 0.79062 0.80983 1.22736 1.22829 1.16070 1.20283 0.89857 0.93804 0.90683 1.20800 0.95410 0.97994 0.96011 1.21053 0.98760 1.00454 0.93581 1.21306 0.98341 0.98121 0.97298 1.21364 0.96245 0.97789 0.99444 1.21404 1.00478 1.00100 0.92046 1.21195 0.96888 0.96855 0.99010 1.23917 1.00036 0.83114 0.97169 1.88773 1.86289 1.21146 1.34253 0.91471 0.90961 0.94796 0.91558 0.90157 0.91627 0.90351 0.92478 0.92988 0.91516 0.94072 0.89384 0.85663 0.83722 0.83410 0.85044 0.93841 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 8.61 71.98 0.62 -4.38 16 2 C 0.09 2.99 1.19 -10.42 -0.01 2.98 16 3 C -0.13 -3.18 8.67 71.98 0.62 -2.56 16 4 C -0.15 -5.22 5.87 31.58 0.19 -5.03 16 5 C 0.15 5.47 3.66 46.29 0.17 5.64 16 6 H 0.09 2.93 7.96 -2.39 -0.02 2.91 16 7 N -0.59 -25.61 2.12 -675.15 -1.43 -27.04 16 8 C -0.25 -13.10 8.23 84.03 0.69 -12.40 16 9 H 0.04 2.53 6.70 -2.91 -0.02 2.51 16 10 C 0.00 0.18 5.00 84.86 0.42 0.60 16 11 N -0.92 -55.18 13.97 21.65 0.30 -54.87 16 12 Si 0.89 43.23 26.29 68.60 1.80 45.03 16 13 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 15 H -0.24 -10.40 5.92 99.48 0.59 -9.82 16 16 C 0.18 7.25 3.98 85.63 0.34 7.59 16 17 C -0.10 -3.71 5.45 -19.87 -0.11 -3.82 16 18 C -0.12 -4.73 9.72 22.27 0.22 -4.51 16 19 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 20 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 21 C -0.12 -3.11 10.05 22.27 0.22 -2.88 16 22 C -0.12 -3.60 9.68 22.27 0.22 -3.39 16 23 C 0.04 1.37 7.23 72.67 0.53 1.89 16 24 O -0.39 -13.75 10.86 -148.98 -1.62 -15.37 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.03 1.27 8.13 -2.39 -0.02 1.26 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 2.46 7.70 -2.39 -0.02 2.45 16 32 H 0.06 2.41 5.80 -2.39 -0.01 2.39 16 33 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.07 2.37 8.00 -2.39 -0.02 2.35 16 35 H 0.04 1.86 4.55 -2.39 -0.01 1.85 16 36 H 0.09 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 39 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.04 1.92 7.25 -2.39 -0.02 1.90 16 42 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -62.44 334.36 4.48 -57.96 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.86 Total: 21.81 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.56 Total: -27.53 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -1.13 Total: -81.91 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -1.62 Total: -15.37 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.80 Total: 45.03 kcal Total: -62.44 4.48 -57.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.472 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds