Wall clock time and date at job start Mon Mar 30 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.89646 * 2 1 4 4 C 1.54378 * 109.83055 * 239.06143 * 2 1 3 5 5 C 1.55305 * 102.25479 * 261.84513 * 4 2 1 6 6 H 1.08994 * 111.12273 * 83.78621 * 5 4 2 7 7 N 1.46502 * 111.12519 * 207.90554 * 5 4 2 8 8 C 1.36944 * 119.99899 * 59.99996 * 7 5 4 9 9 H 1.08006 * 119.99856 * 326.30031 * 8 7 5 10 10 C 1.38803 * 119.99881 * 146.30101 * 8 7 5 11 11 N 1.31618 * 120.00504 * 336.21755 * 10 8 7 12 12 Si 1.86808 * 119.99827 * 156.21510 * 10 8 7 13 13 H 1.48491 * 109.46942 * 90.00204 * 12 10 8 14 14 H 1.48505 * 109.46901 * 210.00057 * 12 10 8 15 15 H 1.48501 * 109.47080 * 330.00092 * 12 10 8 16 16 C 1.46495 * 120.00004 * 240.00243 * 7 5 4 17 17 C 1.50700 * 109.47477 * 84.65801 * 16 7 5 18 18 C 1.38236 * 119.99976 * 264.16154 * 17 16 7 19 19 C 1.38227 * 119.99941 * 179.74436 * 18 17 16 20 20 C 1.38235 * 120.00072 * 0.52227 * 19 18 17 21 21 C 1.38233 * 120.00052 * 359.75173 * 20 19 18 22 22 C 1.38232 * 119.99818 * 359.97425 * 21 20 19 23 23 C 1.54944 * 100.94251 * 325.86516 * 5 4 2 24 24 O 1.43244 * 109.82844 * 120.93090 * 2 1 3 25 25 H 1.08998 * 109.47265 * 300.52166 * 1 2 3 26 26 H 1.08994 * 109.46911 * 60.52417 * 1 2 3 27 27 H 1.08995 * 109.46897 * 180.52471 * 1 2 3 28 28 H 1.09005 * 109.46870 * 179.48227 * 3 2 1 29 29 H 1.08998 * 109.46890 * 299.47191 * 3 2 1 30 30 H 1.08998 * 109.47383 * 59.48096 * 3 2 1 31 31 H 1.08999 * 110.84938 * 20.03839 * 4 2 1 32 32 H 1.09006 * 110.84532 * 143.45203 * 4 2 1 33 33 H 0.97000 * 120.00576 * 179.97438 * 11 10 8 34 34 H 1.09005 * 109.46876 * 204.65370 * 16 7 5 35 35 H 1.09000 * 109.47197 * 324.65296 * 16 7 5 36 36 H 1.08003 * 119.99848 * 359.97438 * 18 17 16 37 37 H 1.08002 * 120.00262 * 180.29455 * 19 18 17 38 38 H 1.08006 * 120.00284 * 179.77411 * 20 19 18 39 39 H 1.08002 * 120.00223 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.99808 * 180.02562 * 22 21 20 41 41 H 1.09001 * 110.31163 * 277.53115 * 23 5 4 42 42 H 1.08999 * 110.30733 * 155.35643 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 2.3681 -2.1571 -0.6766 6 1 1.4730 -2.7785 -0.6505 7 7 3.4367 -2.8078 -1.4388 8 6 4.6740 -2.2262 -1.5168 9 1 4.7648 -1.1500 -1.5317 10 6 5.8113 -3.0196 -1.5765 11 7 5.7828 -4.2475 -1.1034 12 14 7.3825 -2.3447 -2.3286 13 1 8.1960 -1.6913 -1.2721 14 1 8.1586 -3.4565 -2.9343 15 1 7.0418 -1.3500 -3.3773 16 6 3.1815 -4.0807 -2.1176 17 6 2.5671 -3.8157 -3.4679 18 6 1.1940 -3.8555 -3.6223 19 6 0.6301 -3.6072 -4.8597 20 6 1.4399 -3.3298 -5.9451 21 6 2.8133 -3.2955 -5.7920 22 6 3.3769 -3.5382 -4.5533 23 6 2.8408 -1.7982 0.7547 24 8 2.0159 -0.6926 1.1559 25 1 -0.3634 0.5219 0.8852 26 1 -0.3633 0.5056 -0.8946 27 1 -0.3633 -1.0276 0.0094 28 1 3.1407 1.4305 0.0093 29 1 1.6989 1.9523 -0.8947 30 1 1.6837 1.9580 0.8853 31 1 1.2851 -0.8018 -2.0165 32 1 2.9552 -0.2712 -1.6323 33 1 6.5775 -4.8021 -1.1456 34 1 4.1208 -4.6190 -2.2452 35 1 2.4971 -4.6812 -1.5184 36 1 0.5615 -4.0769 -2.7752 37 1 -0.4429 -3.6336 -4.9793 38 1 0.9995 -3.1394 -6.9128 39 1 3.4460 -3.0784 -6.6399 40 1 4.4499 -3.5111 -4.4336 41 1 3.8900 -1.5030 0.7438 42 1 2.6918 -2.6442 1.4255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595638805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:03 Heat of formation + Delta-G solvation = -7.206347 kcal Electronic energy + Delta-G solvation = -22304.124135 eV Core-core repulsion = 19249.337875 eV Total energy + Delta-G solvation = -3054.786259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.29768 -38.49887 -35.45321 -32.61307 -31.75963 -31.23336 -30.26788 -28.44540 -27.03294 -25.62691 -25.04784 -23.24146 -21.90498 -20.61491 -19.94395 -19.37914 -16.85857 -16.00753 -15.65964 -15.15088 -14.67201 -14.51033 -14.30282 -14.09061 -13.57995 -13.27510 -12.97608 -12.83086 -12.78622 -12.53588 -12.22061 -11.91308 -11.83307 -11.44879 -11.26080 -11.13283 -11.03332 -10.88462 -10.70443 -10.50336 -10.36802 -10.17461 -10.04266 -9.92655 -9.67430 -8.83828 -8.57166 -8.32993 -8.03827 -6.75144 -5.94520 -3.44071 1.98791 2.02519 3.28384 3.37582 3.40742 4.25935 4.45583 4.48714 5.13363 5.23776 5.31098 5.40057 5.42318 5.45848 5.54462 5.61148 5.75739 5.87239 5.89358 5.91077 6.01750 6.06190 6.13497 6.18997 6.21933 6.25446 6.38632 6.45898 6.52859 6.56107 6.67272 6.74231 6.78208 6.86573 7.01622 7.03493 7.11699 7.37437 7.54725 7.68122 7.71301 7.77818 8.36285 9.03767 9.66959 10.22688 11.07406 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.009036 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.984673 B = 3097.931525 C = 4700.282803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.100 3.900 3 C -0.150 4.150 4 C -0.157 4.157 5 C 0.150 3.850 6 H 0.063 0.937 7 N -0.560 5.560 8 C -0.256 4.256 9 H 0.064 0.936 10 C 0.014 3.986 11 N -0.881 5.881 12 Si 0.890 3.110 13 H -0.285 1.285 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.174 3.826 17 C -0.072 4.072 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.128 4.128 22 C -0.097 4.097 23 C 0.041 3.959 24 O -0.387 6.387 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.257 0.743 34 H 0.109 0.891 35 H 0.033 0.967 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 3.384 -3.703 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.060 3.940 3 C -0.207 4.207 4 C -0.197 4.197 5 C 0.041 3.959 6 H 0.081 0.919 7 N -0.278 5.278 8 C -0.385 4.385 9 H 0.081 0.919 10 C -0.186 4.186 11 N -0.522 5.522 12 Si 0.718 3.282 13 H -0.211 1.211 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.048 3.952 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.162 4.162 21 C -0.146 4.146 22 C -0.116 4.116 23 C -0.037 4.037 24 O -0.307 6.307 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.445 3.295 -3.435 9.694 hybrid contribution 0.874 0.339 -0.706 1.174 sum -7.571 3.634 -4.141 9.364 Atomic orbital electron populations 1.22034 0.95124 1.02006 1.01293 1.21930 0.93139 0.92283 0.86625 1.22062 1.01742 0.95763 1.01157 1.23523 1.01375 0.98588 0.96184 1.21946 0.91660 0.92198 0.90053 0.91898 1.43636 1.07584 1.23269 1.53282 1.18904 0.82092 0.91239 1.46237 0.91884 1.25032 0.97474 0.96662 0.99447 1.70013 1.28916 1.09300 1.44021 0.86506 0.83510 0.78397 0.79737 1.21133 1.21326 1.20190 1.20104 1.00844 0.88411 0.85847 1.21237 0.93027 0.95149 0.98055 1.21034 0.94997 1.01662 0.96653 1.20968 0.98762 1.01480 0.93488 1.20891 0.93913 1.03265 0.98136 1.21090 0.94848 1.01182 0.97451 1.21101 1.00227 0.98356 0.91940 1.23822 0.95574 0.87610 0.96697 1.88328 1.67802 1.44614 1.29931 0.92705 0.92208 0.92439 0.92186 0.92261 0.92791 0.91687 0.90091 0.93297 0.87317 0.94884 0.87240 0.87352 0.87397 0.87206 0.86275 0.90636 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.73 37.16 0.32 -1.76 16 2 C 0.10 1.68 1.27 -89.90 -0.11 1.57 16 3 C -0.15 -2.26 8.75 37.16 0.32 -1.93 16 4 C -0.16 -2.89 5.67 -24.79 -0.14 -3.03 16 5 C 0.15 3.04 3.64 -65.68 -0.24 2.80 16 6 H 0.06 1.22 7.94 -51.93 -0.41 0.81 16 7 N -0.56 -12.74 2.53 -164.48 -0.42 -13.16 16 8 C -0.26 -6.38 7.75 -15.06 -0.12 -6.50 16 9 H 0.06 1.62 6.82 -52.48 -0.36 1.26 16 10 C 0.01 0.37 4.88 -17.43 -0.09 0.29 16 11 N -0.88 -23.52 11.43 55.49 0.63 -22.89 16 12 Si 0.89 20.45 29.62 -169.99 -5.03 15.42 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.17 3.82 5.35 -5.20 -0.03 3.79 16 17 C -0.07 -1.42 5.46 -104.62 -0.57 -1.99 16 18 C -0.12 -2.16 9.68 -39.59 -0.38 -2.55 16 19 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 20 C -0.14 -2.21 10.05 -39.58 -0.40 -2.61 16 21 C -0.13 -2.14 10.05 -39.59 -0.40 -2.54 16 22 C -0.10 -1.90 9.72 -39.58 -0.38 -2.28 16 23 C 0.04 0.84 7.32 38.18 0.28 1.12 16 24 O -0.39 -7.53 10.68 -35.23 -0.38 -7.90 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.14 7.82 -51.93 -0.41 0.74 16 32 H 0.08 1.64 6.37 -51.93 -0.33 1.31 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.11 2.70 5.37 -51.93 -0.28 2.42 16 35 H 0.03 0.70 7.94 -51.93 -0.41 0.29 16 36 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 41 H 0.08 1.74 7.02 -51.93 -0.36 1.37 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -26.39 338.80 -9.18 -35.57 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.77 Total: 5.87 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.33 Total: -18.02 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.22 Total: -36.05 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.38 Total: -7.90 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.39 -9.18 -35.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.367 kcal (2) G-P(sol) polarization free energy of solvation -26.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds