Wall clock time and date at job start Mon Mar 30 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.89646 * 2 1 4 4 C 1.54378 * 109.83055 * 239.06143 * 2 1 3 5 5 C 1.55305 * 102.25479 * 261.84513 * 4 2 1 6 6 H 1.08994 * 111.12273 * 83.78621 * 5 4 2 7 7 N 1.46502 * 111.12519 * 207.90554 * 5 4 2 8 8 C 1.36944 * 119.99899 * 59.99996 * 7 5 4 9 9 H 1.08006 * 119.99856 * 326.30031 * 8 7 5 10 10 C 1.38803 * 119.99881 * 146.30101 * 8 7 5 11 11 N 1.31618 * 120.00504 * 336.21755 * 10 8 7 12 12 Si 1.86808 * 119.99827 * 156.21510 * 10 8 7 13 13 H 1.48491 * 109.46942 * 90.00204 * 12 10 8 14 14 H 1.48505 * 109.46901 * 210.00057 * 12 10 8 15 15 H 1.48501 * 109.47080 * 330.00092 * 12 10 8 16 16 C 1.46495 * 120.00004 * 240.00243 * 7 5 4 17 17 C 1.50700 * 109.47477 * 84.65801 * 16 7 5 18 18 C 1.38236 * 119.99976 * 264.16154 * 17 16 7 19 19 C 1.38227 * 119.99941 * 179.74436 * 18 17 16 20 20 C 1.38235 * 120.00072 * 0.52227 * 19 18 17 21 21 C 1.38233 * 120.00052 * 359.75173 * 20 19 18 22 22 C 1.38232 * 119.99818 * 359.97425 * 21 20 19 23 23 C 1.54944 * 100.94251 * 325.86516 * 5 4 2 24 24 O 1.43244 * 109.82844 * 120.93090 * 2 1 3 25 25 H 1.08998 * 109.47265 * 300.52166 * 1 2 3 26 26 H 1.08994 * 109.46911 * 60.52417 * 1 2 3 27 27 H 1.08995 * 109.46897 * 180.52471 * 1 2 3 28 28 H 1.09005 * 109.46870 * 179.48227 * 3 2 1 29 29 H 1.08998 * 109.46890 * 299.47191 * 3 2 1 30 30 H 1.08998 * 109.47383 * 59.48096 * 3 2 1 31 31 H 1.08999 * 110.84938 * 20.03839 * 4 2 1 32 32 H 1.09006 * 110.84532 * 143.45203 * 4 2 1 33 33 H 0.97000 * 120.00576 * 179.97438 * 11 10 8 34 34 H 1.09005 * 109.46876 * 204.65370 * 16 7 5 35 35 H 1.09000 * 109.47197 * 324.65296 * 16 7 5 36 36 H 1.08003 * 119.99848 * 359.97438 * 18 17 16 37 37 H 1.08002 * 120.00262 * 180.29455 * 19 18 17 38 38 H 1.08006 * 120.00284 * 179.77411 * 20 19 18 39 39 H 1.08002 * 120.00223 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.99808 * 180.02562 * 22 21 20 41 41 H 1.09001 * 110.31163 * 277.53115 * 23 5 4 42 42 H 1.08999 * 110.30733 * 155.35643 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 2.3681 -2.1571 -0.6766 6 1 1.4730 -2.7785 -0.6505 7 7 3.4367 -2.8078 -1.4388 8 6 4.6740 -2.2262 -1.5168 9 1 4.7648 -1.1500 -1.5317 10 6 5.8113 -3.0196 -1.5765 11 7 5.7828 -4.2475 -1.1034 12 14 7.3825 -2.3447 -2.3286 13 1 8.1960 -1.6913 -1.2721 14 1 8.1586 -3.4565 -2.9343 15 1 7.0418 -1.3500 -3.3773 16 6 3.1815 -4.0807 -2.1176 17 6 2.5671 -3.8157 -3.4679 18 6 1.1940 -3.8555 -3.6223 19 6 0.6301 -3.6072 -4.8597 20 6 1.4399 -3.3298 -5.9451 21 6 2.8133 -3.2955 -5.7920 22 6 3.3769 -3.5382 -4.5533 23 6 2.8408 -1.7982 0.7547 24 8 2.0159 -0.6926 1.1559 25 1 -0.3634 0.5219 0.8852 26 1 -0.3633 0.5056 -0.8946 27 1 -0.3633 -1.0276 0.0094 28 1 3.1407 1.4305 0.0093 29 1 1.6989 1.9523 -0.8947 30 1 1.6837 1.9580 0.8853 31 1 1.2851 -0.8018 -2.0165 32 1 2.9552 -0.2712 -1.6323 33 1 6.5775 -4.8021 -1.1456 34 1 4.1208 -4.6190 -2.2452 35 1 2.4971 -4.6812 -1.5184 36 1 0.5615 -4.0769 -2.7752 37 1 -0.4429 -3.6336 -4.9793 38 1 0.9995 -3.1394 -6.9128 39 1 3.4460 -3.0784 -6.6399 40 1 4.4499 -3.5111 -4.4336 41 1 3.8900 -1.5030 0.7438 42 1 2.6918 -2.6442 1.4255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595638805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:02 Heat of formation + Delta-G solvation = -19.331191 kcal Electronic energy + Delta-G solvation = -22304.649907 eV Core-core repulsion = 19249.337875 eV Total energy + Delta-G solvation = -3055.312032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81628 -39.87305 -37.14773 -34.00175 -33.62790 -32.70282 -31.59939 -30.07360 -28.19778 -27.39504 -26.55026 -24.94984 -23.25035 -22.06424 -21.62228 -20.80447 -18.59306 -17.47648 -17.21284 -16.75598 -16.37778 -15.91884 -15.83719 -15.50518 -15.29403 -14.71464 -14.49957 -14.25531 -14.11795 -13.96503 -13.54380 -13.44585 -13.08011 -13.07035 -12.75291 -12.70086 -12.64992 -12.50127 -12.29161 -12.16207 -11.86894 -11.75972 -11.65056 -11.44221 -11.28953 -10.49784 -10.37669 -9.65755 -9.43370 -8.62406 -7.88675 -5.40834 0.65266 0.67808 1.40661 1.45516 1.52934 2.45881 2.89992 3.07196 3.21802 3.70556 3.88365 4.05902 4.09590 4.14877 4.26112 4.31930 4.36959 4.39389 4.43038 4.48183 4.68615 4.78263 4.82956 4.84263 4.86211 4.95823 4.98530 5.02582 5.05592 5.21351 5.26625 5.31185 5.33620 5.36793 5.49706 5.60506 5.69543 5.73669 5.78121 6.04531 6.25228 6.31393 6.45578 7.12205 7.80819 8.32234 9.10064 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.009036 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.984673 B = 3097.931525 C = 4700.282803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 C -0.147 4.147 4 C -0.144 4.144 5 C 0.147 3.853 6 H 0.074 0.926 7 N -0.570 5.570 8 C -0.248 4.248 9 H 0.052 0.948 10 C -0.027 4.027 11 N -0.909 5.909 12 Si 0.939 3.061 13 H -0.287 1.287 14 H -0.290 1.290 15 H -0.274 1.274 16 C 0.179 3.821 17 C -0.091 4.091 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.123 4.123 23 C 0.050 3.950 24 O -0.396 6.396 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.252 0.748 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 4.613 -5.384 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.053 3.947 3 C -0.205 4.205 4 C -0.184 4.184 5 C 0.039 3.961 6 H 0.092 0.908 7 N -0.289 5.289 8 C -0.378 4.378 9 H 0.070 0.930 10 C -0.225 4.225 11 N -0.553 5.553 12 Si 0.768 3.232 13 H -0.214 1.214 14 H -0.216 1.216 15 H -0.199 1.199 16 C 0.054 3.946 17 C -0.093 4.093 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.029 4.029 24 O -0.315 6.315 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.261 4.540 -5.127 13.180 hybrid contribution 1.644 -0.024 -0.221 1.659 sum -9.617 4.515 -5.348 11.894 Atomic orbital electron populations 1.21998 0.92386 1.02483 1.02991 1.22230 0.95185 0.92556 0.84737 1.22055 1.00553 0.94943 1.02933 1.23373 1.00747 0.97084 0.97190 1.22052 0.91202 0.93256 0.89569 0.90779 1.43749 1.07540 1.23360 1.54222 1.18921 0.83243 0.90763 1.44900 0.93005 1.25527 0.99579 0.97014 1.00363 1.70114 1.29172 1.10236 1.45777 0.85723 0.80949 0.77639 0.78900 1.21380 1.21576 1.19929 1.19884 0.99427 0.87784 0.87521 1.20950 0.94374 0.97347 0.96672 1.21172 0.93781 1.01536 0.98277 1.21376 1.00712 0.99451 0.92346 1.21337 0.93044 1.01091 0.99789 1.21329 0.96245 1.00483 0.96725 1.21017 0.99011 1.00584 0.93604 1.23571 0.94110 0.87986 0.97209 1.88316 1.67511 1.44350 1.31348 0.91608 0.89937 0.92601 0.94105 0.90027 0.91468 0.90328 0.92458 0.93829 0.90589 0.94932 0.86098 0.83698 0.83663 0.85189 0.89121 0.93848 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.73 71.98 0.63 -2.91 16 2 C 0.09 2.94 1.27 -10.32 -0.01 2.93 16 3 C -0.15 -4.18 8.75 71.98 0.63 -3.55 16 4 C -0.14 -5.19 5.67 31.85 0.18 -5.01 16 5 C 0.15 5.98 3.64 46.45 0.17 6.15 16 6 H 0.07 2.83 7.94 -2.39 -0.02 2.81 16 7 N -0.57 -26.76 2.53 -674.28 -1.70 -28.47 16 8 C -0.25 -12.91 7.75 84.03 0.65 -12.26 16 9 H 0.05 2.78 6.82 -2.91 -0.02 2.76 16 10 C -0.03 -1.45 4.88 84.86 0.41 -1.03 16 11 N -0.91 -50.96 11.43 21.65 0.25 -50.71 16 12 Si 0.94 43.69 29.62 68.60 2.03 45.72 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 16 C 0.18 8.18 5.35 85.63 0.46 8.64 16 17 C -0.09 -3.59 5.46 -19.87 -0.11 -3.70 16 18 C -0.13 -4.20 9.68 22.27 0.22 -3.98 16 19 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 20 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 21 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 22 C -0.12 -4.85 9.72 22.27 0.22 -4.63 16 23 C 0.05 2.09 7.32 72.65 0.53 2.62 16 24 O -0.40 -15.18 10.68 -148.98 -1.59 -16.77 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 2.59 7.82 -2.39 -0.02 2.57 16 32 H 0.06 2.33 6.37 -2.38 -0.02 2.31 16 33 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.08 4.00 5.37 -2.38 -0.01 3.99 16 35 H 0.03 1.43 7.94 -2.39 -0.02 1.41 16 36 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.09 3.99 8.06 -2.91 -0.02 3.96 16 41 H 0.04 2.10 7.02 -2.39 -0.02 2.08 16 42 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -59.06 338.80 4.60 -54.46 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.98 Total: 22.75 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.64 Total: -26.97 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.46 Total: -79.18 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.59 Total: -16.77 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -59.06 4.60 -54.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.124 kcal (2) G-P(sol) polarization free energy of solvation -59.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds