Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 C 1.52994 * 109.46979 * 239.99858 * 2 1 3 5 5 C 1.50706 * 109.46885 * 119.99614 * 2 1 3 6 6 C 1.40194 * 120.36674 * 179.97438 * 5 2 1 7 7 C 1.35342 * 119.95010 * 179.97438 * 6 5 2 8 8 N 1.35766 * 120.70132 * 359.97187 * 7 6 5 9 9 C 1.46501 * 119.62495 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46920 * 88.75832 * 9 8 7 11 11 C 1.50697 * 115.55042 * 174.49215 * 10 9 8 12 12 H 1.08003 * 120.00614 * 215.50962 * 11 10 9 13 13 C 1.37884 * 119.99899 * 35.51574 * 11 10 9 14 14 N 1.31511 * 119.99836 * 10.26850 * 13 11 10 15 15 Si 1.86801 * 120.00260 * 190.26783 * 13 11 10 16 16 H 1.48494 * 109.47238 * 270.00214 * 15 13 11 17 17 H 1.48500 * 109.47026 * 29.99807 * 15 13 11 18 18 H 1.48499 * 109.47248 * 149.99837 * 15 13 11 19 19 C 1.52995 * 117.49983 * 320.16622 * 10 9 8 20 20 C 1.53000 * 117.49752 * 28.82839 * 10 9 8 21 21 C 1.34659 * 120.75172 * 0.29934 * 8 7 6 22 22 O 1.22060 * 119.99026 * 179.70046 * 21 8 7 23 23 C 1.36393 * 120.36710 * 359.97438 * 5 2 1 24 24 H 1.09006 * 109.47209 * 300.00729 * 1 2 3 25 25 H 1.09007 * 109.46830 * 59.99780 * 1 2 3 26 26 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47056 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.46765 * 299.99871 * 3 2 1 29 29 H 1.09000 * 109.47082 * 59.99360 * 3 2 1 30 30 H 1.09008 * 109.47324 * 299.99908 * 4 2 1 31 31 H 1.08996 * 109.47697 * 60.00369 * 4 2 1 32 32 H 1.08999 * 109.47313 * 180.02562 * 4 2 1 33 33 H 1.08001 * 120.02617 * 359.95293 * 6 5 2 34 34 H 1.07998 * 119.65056 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.46965 * 328.76002 * 9 8 7 36 36 H 1.09000 * 109.47388 * 208.75892 * 9 8 7 37 37 H 0.97004 * 120.00301 * 174.98653 * 14 13 11 38 38 H 1.09002 * 117.50064 * 215.00012 * 19 10 9 39 39 H 1.09003 * 117.50238 * 0.02726 * 19 10 9 40 40 H 1.09004 * 117.50319 * 359.97409 * 20 10 9 41 41 H 1.09000 * 117.49963 * 144.97522 * 20 10 9 42 42 H 1.08004 * 120.35133 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 3.4089 -0.8433 1.4599 7 6 3.8507 -1.4824 2.5680 8 7 2.9736 -1.9991 3.4663 9 6 3.4777 -2.6858 4.6582 10 6 3.6835 -1.6698 5.7834 11 6 4.0780 -2.2486 7.1177 12 1 3.7135 -1.8001 8.0301 13 6 4.9046 -3.3508 7.1738 14 7 5.5101 -3.7746 6.0860 15 14 5.1644 -4.2420 8.7948 16 1 6.3232 -3.6463 9.5070 17 1 3.9462 -4.1088 9.6336 18 1 5.4301 -5.6793 8.5325 19 6 4.2636 -0.3054 5.4059 20 6 2.7867 -0.4301 5.7885 21 6 1.6455 -1.8923 3.2715 22 8 0.8693 -2.3668 4.0854 23 6 1.1526 -1.2310 2.1335 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 4.1164 -0.4364 0.7525 34 1 4.9123 -1.5818 2.7401 35 1 4.4274 -3.1675 4.4255 36 1 2.7566 -3.4389 4.9760 37 1 6.1474 -4.5040 6.1385 38 1 4.9308 0.1737 6.1225 39 1 4.4984 -0.1313 4.3557 40 1 2.0505 -0.3381 4.9900 41 1 2.4819 -0.0334 6.7569 42 1 0.0883 -1.1383 1.9745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596275039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 11.664332 kcal Electronic energy + Delta-G solvation = -22053.900725 eV Core-core repulsion = 18999.932760 eV Total energy + Delta-G solvation = -3053.967965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00965 -38.09791 -36.58705 -35.49269 -32.36680 -32.11338 -29.70653 -27.31403 -27.26727 -26.78046 -25.48321 -23.33603 -22.46336 -21.05043 -19.35576 -19.03695 -16.84257 -16.75106 -16.44954 -15.43945 -15.21941 -14.89795 -14.44308 -14.22707 -13.96872 -13.57091 -13.36058 -12.88085 -12.48853 -12.25285 -12.11920 -12.02138 -11.86348 -11.74422 -11.50904 -11.36124 -11.04699 -11.03023 -11.01078 -10.80408 -10.60804 -10.46206 -10.22531 -9.89651 -9.33224 -9.11637 -9.04303 -8.79554 -8.16367 -7.35516 -6.22903 -4.23038 1.35767 2.36961 3.20621 3.29047 3.35022 3.49832 4.20364 4.27651 4.53976 4.73152 4.87206 4.95157 5.14771 5.26480 5.39045 5.49394 5.53874 5.54908 5.61651 5.70740 5.73792 5.80408 5.89838 5.93774 6.01404 6.01816 6.18492 6.24285 6.32009 6.35492 6.45796 6.58199 6.68513 6.71795 6.76560 6.93440 6.98880 7.10040 7.29209 7.47354 7.75136 7.90166 8.25529 8.71226 8.77808 9.36772 10.81598 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.004640 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.941261 B = 6032.850748 C = 6105.742145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C -0.136 4.136 4 C -0.136 4.136 5 C 0.027 3.973 6 C -0.259 4.259 7 C 0.163 3.837 8 N -0.483 5.483 9 C 0.121 3.879 10 C 0.046 3.954 11 C -0.481 4.481 12 H 0.066 0.934 13 C 0.068 3.932 14 N -0.892 5.892 15 Si 0.902 3.098 16 H -0.279 1.279 17 H -0.271 1.271 18 H -0.283 1.283 19 C -0.208 4.208 20 C -0.203 4.203 21 C 0.509 3.491 22 O -0.555 6.555 23 C -0.265 4.265 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.266 0.734 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 6.458 -14.282 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.193 4.193 5 C 0.023 3.977 6 C -0.282 4.282 7 C 0.031 3.969 8 N -0.190 5.190 9 C 0.002 3.998 10 C 0.045 3.955 11 C -0.519 4.519 12 H 0.084 0.916 13 C -0.134 4.134 14 N -0.530 5.530 15 Si 0.729 3.271 16 H -0.205 1.205 17 H -0.196 1.196 18 H -0.209 1.209 19 C -0.245 4.245 20 C -0.240 4.240 21 C 0.312 3.688 22 O -0.438 6.438 23 C -0.287 4.287 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.950 5.900 -13.749 15.250 hybrid contribution 0.309 -0.251 0.804 0.897 sum -2.640 5.649 -12.946 14.369 Atomic orbital electron populations 1.21967 0.94108 1.02262 1.01879 1.19586 0.95806 0.95289 0.92762 1.21843 1.01429 0.94274 1.01828 1.21838 1.01410 1.00280 0.95792 1.19946 0.93102 0.91276 0.93399 1.20258 0.95361 1.11719 1.00863 1.21993 0.96512 0.90362 0.87984 1.46116 1.07331 1.44608 1.20925 1.22187 1.01847 0.94683 0.81107 1.19224 0.96656 0.84919 0.94736 1.20531 1.29405 1.11780 0.90157 0.91627 1.25000 0.94923 0.96327 0.97144 1.69644 1.26984 1.28665 1.27694 0.86403 0.78665 0.78901 0.83093 1.20518 1.19564 1.20865 1.23094 0.95280 1.07358 0.98810 1.22885 0.92560 1.07830 1.00750 1.17078 0.81433 0.82462 0.87875 1.90933 1.54634 1.51004 1.47254 1.22045 1.00975 1.08697 0.96941 0.92061 0.92496 0.92098 0.92102 0.92429 0.92375 0.92447 0.92422 0.92110 0.84766 0.82384 0.84864 0.89635 0.92369 0.90310 0.91726 0.91342 0.90687 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.14 37.16 0.27 -1.21 16 2 C -0.03 -0.37 0.86 -155.66 -0.13 -0.50 16 3 C -0.14 -1.31 8.30 37.16 0.31 -1.00 16 4 C -0.14 -1.26 8.29 37.15 0.31 -0.95 16 5 C 0.03 0.38 4.75 -104.55 -0.50 -0.12 16 6 C -0.26 -3.57 8.72 -39.88 -0.35 -3.92 16 7 C 0.16 2.66 8.07 -16.84 -0.14 2.52 16 8 N -0.48 -9.74 1.88 -119.77 -0.23 -9.97 16 9 C 0.12 2.84 4.73 -4.04 -0.02 2.82 16 10 C 0.05 1.14 2.37 -155.66 -0.37 0.77 16 11 C -0.48 -13.00 9.04 -34.44 -0.31 -13.31 16 12 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 13 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 14 N -0.89 -23.26 10.75 55.43 0.60 -22.66 16 15 Si 0.90 20.53 29.55 -169.99 -5.02 15.50 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.21 -4.65 9.61 -26.69 -0.26 -4.90 16 20 C -0.20 -4.77 9.54 -26.69 -0.25 -5.02 16 21 C 0.51 10.84 5.49 -15.44 -0.08 10.75 16 22 O -0.55 -14.02 16.39 4.86 0.08 -13.94 16 23 C -0.26 -4.56 8.93 -39.38 -0.35 -4.91 16 24 H 0.06 0.66 7.53 -51.93 -0.39 0.27 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.06 0.64 7.53 -51.93 -0.39 0.25 16 27 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 7.44 -51.93 -0.39 0.15 16 33 H 0.13 1.47 7.22 -52.49 -0.38 1.09 16 34 H 0.16 2.33 7.94 -52.49 -0.42 1.91 16 35 H 0.13 3.19 5.88 -51.93 -0.31 2.89 16 36 H 0.09 2.24 7.34 -51.93 -0.38 1.85 16 37 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 39 H 0.06 1.31 5.79 -51.93 -0.30 1.01 16 40 H 0.07 1.62 5.68 -51.93 -0.29 1.33 16 41 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.14 2.26 5.93 -52.48 -0.31 1.95 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -29.41 329.87 -8.03 -37.44 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.45 Total: 5.96 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.97 Total: -17.30 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.37 Total: -32.63 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.41 -8.03 -37.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.100 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds