Wall clock time and date at job start Mon Mar 30 2020 02:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 C 1.52994 * 109.46979 * 239.99858 * 2 1 3 5 5 C 1.50706 * 109.46885 * 119.99614 * 2 1 3 6 6 C 1.40194 * 120.36674 * 179.97438 * 5 2 1 7 7 C 1.35342 * 119.95010 * 179.97438 * 6 5 2 8 8 N 1.35766 * 120.70132 * 359.97187 * 7 6 5 9 9 C 1.46501 * 119.62495 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46920 * 88.75832 * 9 8 7 11 11 C 1.50697 * 115.55042 * 174.49215 * 10 9 8 12 12 H 1.08003 * 120.00614 * 215.50962 * 11 10 9 13 13 C 1.37884 * 119.99899 * 35.51574 * 11 10 9 14 14 N 1.31511 * 119.99836 * 10.26850 * 13 11 10 15 15 Si 1.86801 * 120.00260 * 190.26783 * 13 11 10 16 16 H 1.48494 * 109.47238 * 270.00214 * 15 13 11 17 17 H 1.48500 * 109.47026 * 29.99807 * 15 13 11 18 18 H 1.48499 * 109.47248 * 149.99837 * 15 13 11 19 19 C 1.52995 * 117.49983 * 320.16622 * 10 9 8 20 20 C 1.53000 * 117.49752 * 28.82839 * 10 9 8 21 21 C 1.34659 * 120.75172 * 0.29934 * 8 7 6 22 22 O 1.22060 * 119.99026 * 179.70046 * 21 8 7 23 23 C 1.36393 * 120.36710 * 359.97438 * 5 2 1 24 24 H 1.09006 * 109.47209 * 300.00729 * 1 2 3 25 25 H 1.09007 * 109.46830 * 59.99780 * 1 2 3 26 26 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47056 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.46765 * 299.99871 * 3 2 1 29 29 H 1.09000 * 109.47082 * 59.99360 * 3 2 1 30 30 H 1.09008 * 109.47324 * 299.99908 * 4 2 1 31 31 H 1.08996 * 109.47697 * 60.00369 * 4 2 1 32 32 H 1.08999 * 109.47313 * 180.02562 * 4 2 1 33 33 H 1.08001 * 120.02617 * 359.95293 * 6 5 2 34 34 H 1.07998 * 119.65056 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.46965 * 328.76002 * 9 8 7 36 36 H 1.09000 * 109.47388 * 208.75892 * 9 8 7 37 37 H 0.97004 * 120.00301 * 174.98653 * 14 13 11 38 38 H 1.09002 * 117.50064 * 215.00012 * 19 10 9 39 39 H 1.09003 * 117.50238 * 0.02726 * 19 10 9 40 40 H 1.09004 * 117.50319 * 359.97409 * 20 10 9 41 41 H 1.09000 * 117.49963 * 144.97522 * 20 10 9 42 42 H 1.08004 * 120.35133 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 3.4089 -0.8433 1.4599 7 6 3.8507 -1.4824 2.5680 8 7 2.9736 -1.9991 3.4663 9 6 3.4777 -2.6858 4.6582 10 6 3.6835 -1.6698 5.7834 11 6 4.0780 -2.2486 7.1177 12 1 3.7135 -1.8001 8.0301 13 6 4.9046 -3.3508 7.1738 14 7 5.5101 -3.7746 6.0860 15 14 5.1644 -4.2420 8.7948 16 1 6.3232 -3.6463 9.5070 17 1 3.9462 -4.1088 9.6336 18 1 5.4301 -5.6793 8.5325 19 6 4.2636 -0.3054 5.4059 20 6 2.7867 -0.4301 5.7885 21 6 1.6455 -1.8923 3.2715 22 8 0.8693 -2.3668 4.0854 23 6 1.1526 -1.2310 2.1335 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 4.1164 -0.4364 0.7525 34 1 4.9123 -1.5818 2.7401 35 1 4.4274 -3.1675 4.4255 36 1 2.7566 -3.4389 4.9760 37 1 6.1474 -4.5040 6.1385 38 1 4.9308 0.1737 6.1225 39 1 4.4984 -0.1313 4.3557 40 1 2.0505 -0.3381 4.9900 41 1 2.4819 -0.0334 6.7569 42 1 0.0883 -1.1383 1.9745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596275039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:40 Heat of formation + Delta-G solvation = -2.987369 kcal Electronic energy + Delta-G solvation = -22054.536070 eV Core-core repulsion = 18999.932760 eV Total energy + Delta-G solvation = -3054.603311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.50212 -39.29825 -38.34762 -36.99128 -34.30427 -33.52245 -31.02860 -28.57506 -28.13593 -28.01726 -27.39373 -24.69122 -23.88765 -22.86956 -21.16177 -20.14795 -18.64100 -18.20869 -17.98866 -16.96484 -16.77781 -16.55219 -15.92010 -15.34237 -15.06770 -14.93888 -14.65758 -14.45603 -14.02558 -13.61562 -13.54324 -13.27954 -12.95729 -12.86354 -12.84501 -12.82555 -12.70875 -12.48710 -12.32133 -12.10322 -12.05105 -11.94485 -11.52533 -11.48419 -11.18947 -10.82251 -10.73451 -10.48836 -10.09891 -8.83525 -8.21993 -6.29112 0.02869 0.99768 1.38501 1.43217 1.52828 1.93671 2.37261 2.77266 2.89873 3.49379 3.54994 3.78296 3.99507 4.06332 4.13716 4.14720 4.36030 4.39523 4.44327 4.47569 4.56931 4.80398 4.81592 4.83079 4.86849 4.93736 4.97461 5.04702 5.06575 5.09804 5.12278 5.21997 5.24949 5.32646 5.39236 5.42552 5.50451 5.51915 5.62773 5.73818 5.80374 6.26687 6.36621 6.67517 7.18867 7.32464 8.81570 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.004640 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.941261 B = 6032.850748 C = 6105.742145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.136 4.136 4 C -0.134 4.134 5 C 0.047 3.953 6 C -0.229 4.229 7 C 0.136 3.864 8 N -0.487 5.487 9 C 0.143 3.857 10 C 0.018 3.982 11 C -0.516 4.516 12 H 0.050 0.950 13 C 0.033 3.967 14 N -0.902 5.902 15 Si 0.959 3.041 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.276 1.276 19 C -0.182 4.182 20 C -0.203 4.203 21 C 0.492 3.508 22 O -0.617 6.617 23 C -0.286 4.286 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.129 0.871 36 H 0.043 0.957 37 H 0.271 0.729 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 7.928 -17.013 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 C -0.193 4.193 4 C -0.192 4.192 5 C 0.043 3.957 6 C -0.251 4.251 7 C 0.008 3.992 8 N -0.194 5.194 9 C 0.022 3.978 10 C 0.017 3.983 11 C -0.553 4.553 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.540 5.540 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.201 1.201 19 C -0.219 4.219 20 C -0.241 4.241 21 C 0.298 3.702 22 O -0.506 6.506 23 C -0.307 4.307 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.197 0.803 34 H 0.195 0.805 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.391 7.400 -16.530 18.164 hybrid contribution -0.169 -0.648 1.513 1.654 sum -1.560 6.751 -15.017 16.539 Atomic orbital electron populations 1.21988 0.93935 1.01967 1.02531 1.19727 0.96106 0.96002 0.91551 1.21863 1.02081 0.92904 1.02420 1.21855 1.02090 0.99749 0.95470 1.20443 0.92929 0.88842 0.93499 1.20818 0.95909 1.08555 0.99806 1.22497 0.96974 0.91394 0.88340 1.45913 1.07600 1.45112 1.20776 1.21609 1.00079 0.93811 0.82290 1.19328 0.98220 0.86001 0.94765 1.20719 1.30626 1.13258 0.90702 0.93159 1.25609 0.94533 0.96473 1.00169 1.69701 1.26824 1.28695 1.28777 0.85528 0.78374 0.78053 0.79628 1.19412 1.20361 1.20113 1.23063 0.93971 1.04670 1.00206 1.22795 0.93354 1.07558 1.00384 1.17686 0.81390 0.82597 0.88561 1.90882 1.56019 1.54168 1.49555 1.21991 1.01883 1.10139 0.96709 0.93211 0.90083 0.92961 0.91054 0.90127 0.93659 0.93385 0.90177 0.91023 0.80305 0.80528 0.85350 0.93813 0.91934 0.90403 0.89125 0.91741 0.91323 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 7.14 71.98 0.51 -2.14 16 2 C -0.03 -0.60 0.86 -52.93 -0.05 -0.65 16 3 C -0.14 -2.00 8.30 71.98 0.60 -1.40 16 4 C -0.13 -1.88 8.29 71.98 0.60 -1.28 16 5 C 0.05 1.22 4.75 -19.82 -0.09 1.12 16 6 C -0.23 -5.47 8.72 22.08 0.19 -5.27 16 7 C 0.14 4.19 8.07 83.42 0.67 4.86 16 8 N -0.49 -19.99 1.88 -650.98 -1.23 -21.21 16 9 C 0.14 7.00 4.73 86.38 0.41 7.41 16 10 C 0.02 0.92 2.37 -52.93 -0.13 0.79 16 11 C -0.52 -28.77 9.04 25.60 0.23 -28.54 16 12 H 0.05 2.86 7.84 -2.91 -0.02 2.84 16 13 C 0.03 1.76 5.26 84.66 0.44 2.21 16 14 N -0.90 -47.41 10.75 21.45 0.23 -47.18 16 15 Si 0.96 42.60 29.55 68.60 2.03 44.63 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 C -0.18 -8.05 9.61 30.62 0.29 -7.75 16 20 C -0.20 -9.84 9.54 30.62 0.29 -9.54 16 21 C 0.49 21.77 5.49 84.82 0.47 22.23 16 22 O -0.62 -33.44 16.39 -5.51 -0.09 -33.53 16 23 C -0.29 -9.86 8.93 22.40 0.20 -9.66 16 24 H 0.05 1.01 7.53 -2.38 -0.02 0.99 16 25 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.05 1.03 7.53 -2.39 -0.02 1.01 16 27 H 0.07 0.92 7.45 -2.39 -0.02 0.90 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.86 7.44 -2.39 -0.02 0.85 16 33 H 0.18 2.77 7.22 -2.91 -0.02 2.75 16 34 H 0.18 4.72 7.94 -2.91 -0.02 4.70 16 35 H 0.13 6.32 5.88 -2.39 -0.01 6.31 16 36 H 0.04 2.45 7.34 -2.39 -0.02 2.44 16 37 H 0.27 13.39 8.32 -92.71 -0.77 12.62 16 38 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.09 3.49 5.79 -2.39 -0.01 3.47 16 40 H 0.06 3.16 5.68 -2.38 -0.01 3.14 16 41 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.14 4.77 5.93 -2.91 -0.02 4.75 16 Total: -1.00 -67.56 329.87 6.59 -60.98 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.00 Total: 23.94 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 4.65 Total: -27.62 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.00 Total: -68.40 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.09 Total: -33.53 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -67.56 6.59 -60.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.990 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds