Wall clock time and date at job start Mon Mar 30 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46729 * 2 1 4 4 C 1.50700 * 109.46782 * 119.99724 * 2 1 3 5 5 C 1.38376 * 119.93185 * 299.97632 * 4 2 1 6 6 C 1.38339 * 120.29642 * 180.02562 * 5 4 2 7 7 C 1.37973 * 120.14281 * 359.97438 * 6 5 4 8 8 C 1.39559 * 119.85322 * 0.04350 * 7 6 5 9 9 C 1.47847 * 120.14245 * 180.02562 * 8 7 6 10 10 O 1.21559 * 119.99906 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00120 * 359.94975 * 9 8 7 12 12 C 1.46497 * 119.99671 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46853 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47059 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.47220 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99487 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00112 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00185 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00099 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47194 * 89.99757 * 19 17 15 21 21 H 1.48491 * 109.47378 * 210.00173 * 19 17 15 22 22 H 1.48507 * 109.47034 * 330.00537 * 19 17 15 23 23 C 1.37935 * 119.92555 * 120.00434 * 4 2 1 24 24 H 1.08999 * 109.47445 * 299.99896 * 1 2 3 25 25 H 1.09004 * 109.47100 * 60.00418 * 1 2 3 26 26 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46990 * 239.99824 * 2 1 3 28 28 H 1.09004 * 109.46988 * 299.99650 * 3 2 1 29 29 H 1.08999 * 109.47073 * 59.99875 * 3 2 1 30 30 H 1.09004 * 109.46659 * 180.02562 * 3 2 1 31 31 H 1.08005 * 119.84839 * 0.02562 * 5 4 2 32 32 H 1.07995 * 119.92638 * 180.02562 * 6 5 4 33 33 H 1.07997 * 120.07335 * 179.97438 * 7 6 5 34 34 H 0.97000 * 120.00121 * 0.02562 * 11 9 8 35 35 H 1.09004 * 109.47650 * 299.99974 * 12 11 9 36 36 H 1.09002 * 109.47529 * 60.00474 * 12 11 9 37 37 H 1.09001 * 109.47218 * 299.99934 * 13 12 11 38 38 H 1.08998 * 109.46923 * 60.00397 * 13 12 11 39 39 H 1.09004 * 109.47652 * 300.00094 * 14 13 12 40 40 H 1.09002 * 109.47321 * 60.00468 * 14 13 12 41 41 H 0.96998 * 119.99761 * 179.97438 * 18 17 15 42 42 H 1.08007 * 120.07478 * 359.69691 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6975 -0.2360 2.4866 6 6 2.1548 -0.8819 3.6212 7 6 2.9482 -2.0049 3.5069 8 6 3.2899 -2.4883 2.2431 9 6 4.1393 -3.6915 2.1132 10 8 4.4350 -4.1106 1.0111 11 7 4.5862 -4.3233 3.2166 12 6 5.4283 -5.5151 3.0877 13 6 5.7945 -6.0338 4.4798 14 6 6.6734 -7.2788 4.3453 15 6 7.0347 -7.7893 5.7165 16 1 6.6731 -7.2771 6.5959 17 6 7.8267 -8.9101 5.8483 18 7 8.2665 -9.5342 4.7774 19 14 8.2738 -9.5433 7.5478 20 1 7.2489 -10.5190 7.9981 21 1 9.6007 -10.2079 7.4952 22 1 8.3272 -8.4061 8.5015 23 6 2.8253 -1.8317 1.1023 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.0763 0.6424 2.5815 32 1 1.8895 -0.5068 4.5986 33 1 3.3050 -2.5080 4.3934 34 1 4.3503 -3.9889 4.0960 35 1 4.8841 -6.2876 2.5442 36 1 6.3378 -5.2604 2.5437 37 1 6.3385 -5.2616 5.0237 38 1 4.8848 -6.2887 5.0235 39 1 6.1290 -8.0510 3.8016 40 1 7.5832 -7.0244 3.8015 41 1 8.8240 -10.3225 4.8702 42 1 3.0822 -2.2036 0.1214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:04 Heat of formation + Delta-G solvation = -65.529514 kcal Electronic energy + Delta-G solvation = -19939.129381 eV Core-core repulsion = 16881.814040 eV Total energy + Delta-G solvation = -3057.315342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34260 -39.80027 -37.03209 -36.29795 -35.22381 -33.19335 -32.02837 -30.82802 -28.57903 -27.95668 -25.68985 -24.57851 -23.47575 -22.41333 -22.15357 -20.48141 -18.71002 -18.37827 -17.33874 -16.88349 -16.76195 -16.49220 -16.21363 -15.64610 -15.48029 -14.87884 -14.67035 -14.50450 -14.42596 -14.25069 -13.77963 -13.61536 -13.25473 -13.03371 -12.87975 -12.75199 -12.59389 -12.55914 -12.39535 -12.02795 -11.78456 -11.70286 -11.62077 -11.55317 -11.26744 -10.95729 -10.56237 -10.27705 -9.89457 -9.70661 -8.20122 -6.31857 -0.15415 0.38819 1.41514 1.43075 1.54043 1.80798 2.09572 2.42139 2.85715 3.13615 3.61382 3.67366 3.89800 4.08481 4.09663 4.17394 4.21267 4.32519 4.34600 4.48531 4.51086 4.54428 4.83643 4.84084 4.90702 4.93272 4.98772 5.01472 5.03863 5.14283 5.20043 5.30139 5.32726 5.38247 5.41355 5.46480 5.50661 5.63744 5.68516 5.82830 5.94759 6.20853 6.48451 6.85528 7.12633 7.37805 8.92091 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045863 B = 0.002521 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.361351 B =11103.263402 C =11511.962096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.087 4.087 5 C -0.086 4.086 6 C -0.119 4.119 7 C -0.092 4.092 8 C -0.149 4.149 9 C 0.547 3.453 10 O -0.589 6.589 11 N -0.708 5.708 12 C 0.128 3.872 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.259 1.259 23 C -0.080 4.080 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.415 0.585 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.070 0.930 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.383 24.609 -3.255 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.198 4.198 4 C -0.087 4.087 5 C -0.103 4.103 6 C -0.137 4.137 7 C -0.110 4.110 8 C -0.152 4.152 9 C 0.337 3.663 10 O -0.471 6.471 11 N -0.360 5.360 12 C 0.005 3.995 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.183 1.183 23 C -0.099 4.099 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.253 0.747 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.057 24.151 -4.061 29.845 hybrid contribution 0.727 -1.048 0.609 1.414 sum -16.330 23.103 -3.452 28.501 Atomic orbital electron populations 1.21850 0.93010 1.01859 1.03123 1.20199 0.96943 0.96560 0.94148 1.21849 1.00733 0.94135 1.03124 1.20049 0.97227 0.94833 0.96602 1.21550 0.97950 0.99757 0.91088 1.21481 0.97006 0.94755 1.00440 1.21586 0.97004 0.96822 0.95630 1.19857 1.02605 0.96744 0.96005 1.18892 0.79674 0.83845 0.83924 1.90734 1.60339 1.68330 1.27736 1.45891 1.51562 1.29134 1.09391 1.21296 0.93465 0.86088 0.98683 1.21604 1.00201 0.98086 0.94010 1.18950 0.93845 0.92596 0.96081 1.21674 1.31024 1.11543 0.93590 0.91406 1.26053 0.95944 0.97119 1.01151 1.70119 1.36133 1.20445 1.30906 0.85388 0.77429 0.78689 0.79174 1.19797 1.21075 1.18335 1.21198 0.96066 0.94892 0.97750 0.91210 0.91142 0.93486 0.91208 0.91147 0.91203 0.93485 0.82781 0.82065 0.83736 0.74730 0.93107 0.93099 0.91173 0.91165 0.98975 0.98967 0.92811 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.01 71.98 0.65 -0.85 16 2 C -0.06 -0.82 3.09 -11.54 -0.04 -0.85 16 3 C -0.14 -1.50 9.01 71.98 0.65 -0.85 16 4 C -0.09 -1.52 4.78 -19.90 -0.10 -1.62 16 5 C -0.09 -1.13 8.71 22.33 0.19 -0.93 16 6 C -0.12 -1.57 10.03 22.23 0.22 -1.35 16 7 C -0.09 -1.65 9.54 22.53 0.21 -1.44 16 8 C -0.15 -3.80 5.87 -20.09 -0.12 -3.92 16 9 C 0.55 18.06 7.77 86.79 0.67 18.73 16 10 O -0.59 -24.64 16.35 -3.90 -0.06 -24.70 16 11 N -0.71 -21.22 5.51 -465.95 -2.57 -23.79 16 12 C 0.13 4.75 5.67 86.38 0.49 5.24 16 13 C -0.10 -3.95 5.27 30.60 0.16 -3.79 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 C -0.08 -1.95 9.21 22.53 0.21 -1.74 16 24 H 0.07 0.56 7.38 -2.39 -0.02 0.55 16 25 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 0.56 7.38 -2.39 -0.02 0.55 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.15 1.12 7.08 -2.91 -0.02 1.09 16 32 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.14 1.98 6.40 -2.91 -0.02 1.96 16 34 H 0.41 9.37 6.51 -92.71 -0.60 8.77 16 35 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 39 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.11 3.13 7.53 -2.91 -0.02 3.11 16 Total: -1.00 -72.95 349.19 4.13 -68.82 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.39 Total: 12.92 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.06 Total: -21.87 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -2.28 Total: -81.09 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.95 4.13 -68.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.294 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds