Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00026 * 2 1 4 4 C 1.38737 * 120.05170 * 90.00021 * 3 2 1 5 5 C 1.50696 * 120.02932 * 0.02562 * 4 3 2 6 6 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 7 7 C 1.38265 * 120.05677 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.94607 * 179.70519 * 7 6 4 9 9 N 1.46893 * 109.47457 * 89.99845 * 8 7 6 10 10 C 1.47477 * 111.00010 * 265.97104 * 9 8 7 11 11 C 1.53515 * 87.93321 * 221.29433 * 10 9 8 12 12 C 1.50701 * 114.34284 * 139.68303 * 11 10 9 13 13 H 1.07994 * 119.99931 * 266.08123 * 12 11 10 14 14 C 1.37876 * 120.00192 * 86.07495 * 12 11 10 15 15 N 1.31513 * 120.00199 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99755 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47135 * 89.99490 * 16 14 12 18 18 H 1.48500 * 109.47182 * 209.99681 * 16 14 12 19 19 H 1.48503 * 109.47259 * 329.99669 * 16 14 12 20 20 C 1.47485 * 111.00162 * 169.99950 * 9 8 7 21 21 C 1.38268 * 120.11063 * 359.97438 * 7 6 4 22 22 C 1.38149 * 120.05738 * 0.02562 * 21 7 6 23 23 C 1.50697 * 120.03154 * 179.97438 * 22 21 7 24 24 H 1.09001 * 109.47130 * 299.99367 * 1 2 3 25 25 H 1.08999 * 109.47517 * 60.00039 * 1 2 3 26 26 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47278 * 270.02231 * 5 4 3 28 28 H 1.08996 * 109.47098 * 30.02356 * 5 4 3 29 29 H 1.09000 * 109.47176 * 150.02334 * 5 4 3 30 30 H 1.07997 * 119.97354 * 179.97438 * 6 4 3 31 31 H 1.09002 * 109.46668 * 209.99879 * 8 7 6 32 32 H 1.08997 * 109.47106 * 329.99123 * 8 7 6 33 33 H 1.09001 * 113.47544 * 336.06376 * 10 9 8 34 34 H 1.09003 * 113.47480 * 106.53346 * 10 9 8 35 35 H 1.08998 * 114.17302 * 272.38029 * 11 10 9 36 36 H 0.96999 * 119.99775 * 180.02562 * 15 14 12 37 37 H 1.08997 * 113.47477 * 253.46828 * 20 9 8 38 38 H 1.08997 * 113.47390 * 23.93330 * 20 9 8 39 39 H 1.08005 * 119.97210 * 179.97438 * 21 7 6 40 40 H 1.09000 * 109.47314 * 270.04886 * 23 22 21 41 41 H 1.09005 * 109.46547 * 30.04342 * 23 22 21 42 42 H 1.08995 * 109.46992 * 150.04179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3614 1.8299 1.2009 5 6 2.0206 1.1599 2.5070 6 6 2.9880 3.0610 1.1983 7 6 3.3004 3.6765 0.0002 8 6 3.9781 5.0226 0.0003 9 7 5.4353 4.8372 0.0030 10 6 5.9694 4.8677 1.3773 11 6 7.1414 5.7034 0.8439 12 6 7.5666 6.8281 1.7524 13 1 7.1626 7.8194 1.6099 14 6 8.4712 6.5914 2.7657 15 7 8.8426 7.5730 3.5582 16 14 9.1703 4.8767 3.0118 17 1 10.4095 4.7272 2.2072 18 1 9.4853 4.6721 4.4486 19 1 8.1720 3.8677 2.5753 20 6 6.1311 6.1155 -0.2360 21 6 2.9871 3.0616 -1.1979 22 6 2.3604 1.8305 -1.2007 23 6 2.0187 1.1611 -2.5069 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.0225 1.4643 2.8220 28 1 2.0468 0.0780 2.3780 29 1 2.7462 1.4530 3.2658 30 1 3.2334 3.5435 2.1328 31 1 3.6840 5.5774 -0.8907 32 1 3.6809 5.5789 0.8892 33 1 5.3338 5.4087 2.0783 34 1 6.2687 3.8875 1.7486 35 1 7.9776 5.1123 0.4704 36 1 9.4792 7.4065 4.2708 37 1 6.5674 6.1928 -1.2318 38 1 5.5387 6.9895 0.0344 39 1 3.2318 3.5446 -2.1324 40 1 1.0208 1.4666 -2.8216 41 1 2.7444 1.4537 -3.2658 42 1 2.0438 0.0791 -2.3781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = 13.232649 kcal Electronic energy + Delta-G solvation = -21117.030910 eV Core-core repulsion = 18063.130953 eV Total energy + Delta-G solvation = -3053.899958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33654 -39.14251 -37.30126 -33.60426 -33.05085 -32.09305 -29.17274 -28.11965 -26.71056 -26.60894 -25.17422 -24.98913 -22.44351 -20.96671 -20.19985 -18.65321 -17.66428 -17.04969 -16.57987 -15.75971 -15.16409 -15.02456 -14.38829 -14.07541 -14.00333 -13.77040 -13.52835 -13.30877 -13.26055 -12.94787 -12.72502 -12.59282 -12.21914 -12.00878 -11.80340 -11.62696 -11.38007 -11.32900 -11.03589 -10.91934 -10.32982 -9.99386 -9.96445 -9.88956 -9.57852 -9.13841 -8.57150 -8.53382 -8.31173 -8.12757 -6.11594 -4.12146 1.23003 1.40018 3.29994 3.38427 3.40770 3.44406 3.91216 4.41890 4.74651 4.76888 4.77828 5.03961 5.06970 5.10071 5.16203 5.32128 5.33018 5.34296 5.41198 5.47645 5.50240 5.57234 5.62547 5.75201 5.79010 5.82021 5.93735 6.02640 6.11845 6.22947 6.30449 6.42198 6.45719 6.50608 6.54304 6.71532 6.76684 6.81156 7.01068 7.34686 7.50515 7.67540 7.84179 8.47608 8.91294 9.51626 11.00846 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.004086 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.442023 B = 6850.438663 C = 7376.412150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.333 6.333 3 C 0.079 3.921 4 C -0.099 4.099 5 C -0.111 4.111 6 C -0.105 4.105 7 C -0.054 4.054 8 C 0.055 3.945 9 N -0.477 5.477 10 C -0.009 4.009 11 C 0.000 4.000 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.899 5.899 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.257 1.257 20 C 0.008 3.992 21 C -0.098 4.098 22 C -0.102 4.102 23 C -0.109 4.109 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 -12.914 -7.562 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.035 3.965 4 C -0.100 4.100 5 C -0.167 4.167 6 C -0.123 4.123 7 C -0.055 4.055 8 C -0.074 4.074 9 N -0.199 5.199 10 C -0.138 4.138 11 C -0.019 4.019 12 C -0.549 4.549 13 H 0.092 0.908 14 C -0.128 4.128 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.181 1.181 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.102 4.102 23 C -0.166 4.166 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.020 -13.614 -7.848 23.165 hybrid contribution 0.006 0.062 0.815 0.817 sum -17.014 -13.553 -7.033 22.860 Atomic orbital electron populations 1.22931 0.79693 1.02724 1.00509 1.85973 1.19334 1.25389 1.94340 1.18257 0.99933 0.86680 0.91608 1.20099 1.00219 0.94742 0.94898 1.20681 1.01448 1.00838 0.93758 1.20868 0.98905 0.94409 0.98148 1.19825 0.96265 0.96676 0.92725 1.21637 0.91545 0.92553 1.01619 1.68913 1.02640 1.29083 1.19302 1.24435 0.99311 1.00339 0.89752 1.20501 0.92401 0.95438 0.93571 1.20918 1.25509 0.95555 1.12950 0.90797 1.25008 0.95575 0.96822 0.95419 1.69910 1.33029 1.31865 1.18838 0.86884 0.80126 0.85547 0.77255 1.20250 1.21493 1.18108 1.23815 0.97004 0.90927 1.00285 1.20773 0.98750 0.94225 0.97949 1.20095 1.00464 0.94847 0.94818 1.20664 1.01313 1.00866 0.93715 0.93766 0.93804 0.89168 0.91681 0.91083 0.91311 0.85801 0.90765 0.92900 0.91767 0.91904 0.92606 0.92586 0.91474 0.92026 0.85777 0.91762 0.91420 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 11.13 101.05 1.12 1.43 16 2 O -0.33 -4.09 8.51 -19.43 -0.17 -4.26 16 3 C 0.08 1.07 5.67 -39.22 -0.22 0.85 16 4 C -0.10 -1.36 5.89 -104.47 -0.62 -1.98 16 5 C -0.11 -1.25 9.79 36.00 0.35 -0.89 16 6 C -0.10 -1.55 9.35 -39.61 -0.37 -1.92 16 7 C -0.05 -0.83 5.47 -104.60 -0.57 -1.40 16 8 C 0.05 0.88 4.94 -4.98 -0.02 0.85 16 9 N -0.48 -9.10 6.32 -246.09 -1.55 -10.66 16 10 C -0.01 -0.20 6.70 -7.54 -0.05 -0.25 16 11 C 0.00 0.01 2.95 -91.24 -0.27 -0.26 16 12 C -0.51 -14.06 9.38 -34.44 -0.32 -14.38 16 13 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 16 Si 0.87 21.33 27.14 -169.99 -4.61 16.72 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.26 -6.02 5.68 56.52 0.32 -5.70 16 20 C 0.01 0.16 7.25 -7.54 -0.05 0.11 16 21 C -0.10 -1.37 9.35 -39.60 -0.37 -1.74 16 22 C -0.10 -1.34 5.89 -104.47 -0.62 -1.96 16 23 C -0.11 -1.12 9.79 36.00 0.35 -0.77 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.79 7.53 -51.93 -0.39 0.39 16 29 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 32 H 0.05 0.85 7.24 -51.93 -0.38 0.48 16 33 H 0.06 1.37 7.38 -51.93 -0.38 0.99 16 34 H 0.06 1.37 7.11 -51.93 -0.37 1.00 16 35 H 0.06 1.33 7.04 -51.93 -0.37 0.97 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.21 7.87 -51.93 -0.41 0.81 16 39 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 42 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.40 342.07 -9.12 -39.52 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.96 Total: 0.14 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -1.76 Total: -20.31 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.78 Total: -36.98 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.17 Total: -4.26 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.61 Total: 16.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.40 -9.12 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.757 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds