Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00026 * 2 1 4 4 C 1.38737 * 120.05170 * 90.00021 * 3 2 1 5 5 C 1.50696 * 120.02932 * 0.02562 * 4 3 2 6 6 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 7 7 C 1.38265 * 120.05677 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.94607 * 179.70519 * 7 6 4 9 9 N 1.46893 * 109.47457 * 89.99845 * 8 7 6 10 10 C 1.47477 * 111.00010 * 265.97104 * 9 8 7 11 11 C 1.53515 * 87.93321 * 221.29433 * 10 9 8 12 12 C 1.50701 * 114.34284 * 139.68303 * 11 10 9 13 13 H 1.07994 * 119.99931 * 266.08123 * 12 11 10 14 14 C 1.37876 * 120.00192 * 86.07495 * 12 11 10 15 15 N 1.31513 * 120.00199 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99755 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47135 * 89.99490 * 16 14 12 18 18 H 1.48500 * 109.47182 * 209.99681 * 16 14 12 19 19 H 1.48503 * 109.47259 * 329.99669 * 16 14 12 20 20 C 1.47485 * 111.00162 * 169.99950 * 9 8 7 21 21 C 1.38268 * 120.11063 * 359.97438 * 7 6 4 22 22 C 1.38149 * 120.05738 * 0.02562 * 21 7 6 23 23 C 1.50697 * 120.03154 * 179.97438 * 22 21 7 24 24 H 1.09001 * 109.47130 * 299.99367 * 1 2 3 25 25 H 1.08999 * 109.47517 * 60.00039 * 1 2 3 26 26 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47278 * 270.02231 * 5 4 3 28 28 H 1.08996 * 109.47098 * 30.02356 * 5 4 3 29 29 H 1.09000 * 109.47176 * 150.02334 * 5 4 3 30 30 H 1.07997 * 119.97354 * 179.97438 * 6 4 3 31 31 H 1.09002 * 109.46668 * 209.99879 * 8 7 6 32 32 H 1.08997 * 109.47106 * 329.99123 * 8 7 6 33 33 H 1.09001 * 113.47544 * 336.06376 * 10 9 8 34 34 H 1.09003 * 113.47480 * 106.53346 * 10 9 8 35 35 H 1.08998 * 114.17302 * 272.38029 * 11 10 9 36 36 H 0.96999 * 119.99775 * 180.02562 * 15 14 12 37 37 H 1.08997 * 113.47477 * 253.46828 * 20 9 8 38 38 H 1.08997 * 113.47390 * 23.93330 * 20 9 8 39 39 H 1.08005 * 119.97210 * 179.97438 * 21 7 6 40 40 H 1.09000 * 109.47314 * 270.04886 * 23 22 21 41 41 H 1.09005 * 109.46547 * 30.04342 * 23 22 21 42 42 H 1.08995 * 109.46992 * 150.04179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3614 1.8299 1.2009 5 6 2.0206 1.1599 2.5070 6 6 2.9880 3.0610 1.1983 7 6 3.3004 3.6765 0.0002 8 6 3.9781 5.0226 0.0003 9 7 5.4353 4.8372 0.0030 10 6 5.9694 4.8677 1.3773 11 6 7.1414 5.7034 0.8439 12 6 7.5666 6.8281 1.7524 13 1 7.1626 7.8194 1.6099 14 6 8.4712 6.5914 2.7657 15 7 8.8426 7.5730 3.5582 16 14 9.1703 4.8767 3.0118 17 1 10.4095 4.7272 2.2072 18 1 9.4853 4.6721 4.4486 19 1 8.1720 3.8677 2.5753 20 6 6.1311 6.1155 -0.2360 21 6 2.9871 3.0616 -1.1979 22 6 2.3604 1.8305 -1.2007 23 6 2.0187 1.1611 -2.5069 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.0225 1.4643 2.8220 28 1 2.0468 0.0780 2.3780 29 1 2.7462 1.4530 3.2658 30 1 3.2334 3.5435 2.1328 31 1 3.6840 5.5774 -0.8907 32 1 3.6809 5.5789 0.8892 33 1 5.3338 5.4087 2.0783 34 1 6.2687 3.8875 1.7486 35 1 7.9776 5.1123 0.4704 36 1 9.4792 7.4065 4.2708 37 1 6.5674 6.1928 -1.2318 38 1 5.5387 6.9895 0.0344 39 1 3.2318 3.5446 -2.1324 40 1 1.0208 1.4666 -2.8216 41 1 2.7444 1.4537 -3.2658 42 1 2.0438 0.0791 -2.3781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = -5.673201 kcal Electronic energy + Delta-G solvation = -21117.850730 eV Core-core repulsion = 18063.130953 eV Total energy + Delta-G solvation = -3054.719777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40702 -40.62781 -38.30522 -34.87155 -34.54392 -33.58826 -30.67392 -28.91620 -27.92584 -27.68577 -26.65104 -26.42314 -24.01455 -21.93632 -21.36759 -20.42997 -19.09217 -18.59663 -17.58146 -16.92029 -16.55940 -16.50751 -15.77996 -15.49488 -15.04888 -14.97347 -14.79379 -14.54352 -14.36894 -14.09143 -13.93505 -13.72396 -13.45381 -13.28781 -13.01052 -12.88245 -12.76339 -12.36641 -12.35991 -12.24579 -11.93063 -11.80688 -11.56947 -11.35956 -11.09436 -10.85414 -10.65606 -9.79270 -9.53743 -9.32501 -8.30201 -6.34871 0.19679 0.37127 1.36806 1.39563 1.51956 2.36745 2.43224 2.95274 3.03357 3.37159 3.72762 3.82407 3.84966 4.07473 4.21064 4.28844 4.34702 4.40422 4.47930 4.49401 4.53452 4.60900 4.65403 4.66738 4.71102 4.73429 4.75450 4.77269 4.86704 4.90331 4.92675 5.02832 5.16476 5.30014 5.34975 5.45340 5.47923 5.55246 5.63003 5.70566 5.81226 6.24773 6.29285 6.59879 6.70944 7.32239 8.85776 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.004086 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.442023 B = 6850.438663 C = 7376.412150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.346 6.346 3 C 0.075 3.925 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.072 4.072 8 C 0.058 3.942 9 N -0.472 5.472 10 C 0.002 3.998 11 C -0.015 4.015 12 C -0.513 4.513 13 H 0.037 0.963 14 C 0.018 3.982 15 N -0.947 5.947 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.241 1.241 20 C 0.018 3.982 21 C -0.103 4.103 22 C -0.107 4.107 23 C -0.106 4.106 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 -15.243 -8.864 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.031 3.969 4 C -0.110 4.110 5 C -0.164 4.164 6 C -0.138 4.138 7 C -0.072 4.072 8 C -0.070 4.070 9 N -0.194 5.194 10 C -0.127 4.127 11 C -0.034 4.034 12 C -0.551 4.551 13 H 0.055 0.945 14 C -0.180 4.180 15 N -0.587 5.587 16 Si 0.763 3.237 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.164 1.164 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.162 4.162 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.406 -15.951 -9.171 26.025 hybrid contribution 0.310 0.801 1.174 1.455 sum -18.096 -15.150 -7.996 24.919 Atomic orbital electron populations 1.23170 0.77623 1.04499 1.01083 1.85940 1.21284 1.24671 1.94401 1.18442 0.99790 0.86942 0.91731 1.20356 0.99958 0.94555 0.96144 1.20693 1.02326 1.00691 0.92679 1.20934 0.99752 0.95132 0.97990 1.19789 0.97455 0.96476 0.93497 1.21635 0.89405 0.93666 1.02316 1.68864 1.04849 1.28319 1.17328 1.24178 0.98265 0.99387 0.90908 1.20500 0.93534 0.94809 0.94603 1.21143 1.24985 0.95393 1.13569 0.94494 1.25848 0.96148 1.00809 0.95174 1.70047 1.34387 1.34293 1.19970 0.85860 0.79755 0.80894 0.77201 1.19540 1.21341 1.16434 1.23692 0.95972 0.91371 1.00037 1.20938 0.98682 0.94627 0.97938 1.20417 0.99742 0.94648 0.95990 1.20697 1.02538 1.00528 0.92433 0.93391 0.93044 0.86861 0.90079 0.90881 0.91361 0.86258 0.88945 0.93314 0.92399 0.92149 0.92619 0.92460 0.89691 0.92178 0.84527 0.89992 0.90589 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.13 113.37 1.26 1.69 16 2 O -0.35 -7.70 8.51 -92.44 -0.79 -8.48 16 3 C 0.07 1.89 5.67 22.51 0.13 2.02 16 4 C -0.11 -2.87 5.89 -19.77 -0.12 -2.99 16 5 C -0.11 -2.25 9.79 71.23 0.70 -1.56 16 6 C -0.12 -3.43 9.35 22.25 0.21 -3.23 16 7 C -0.07 -2.08 5.47 -19.85 -0.11 -2.19 16 8 C 0.06 1.77 4.94 85.56 0.42 2.19 16 9 N -0.47 -17.26 6.32 -932.49 -5.89 -23.15 16 10 C 0.00 0.08 6.70 83.58 0.56 0.64 16 11 C -0.02 -0.70 2.95 -11.19 -0.03 -0.73 16 12 C -0.51 -28.77 9.38 25.60 0.24 -28.53 16 13 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 14 C 0.02 1.03 5.47 84.65 0.46 1.50 16 15 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 16 Si 0.94 44.09 27.14 68.60 1.86 45.95 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.24 -10.59 5.68 99.48 0.56 -10.03 16 20 C 0.02 0.69 7.25 83.57 0.61 1.30 16 21 C -0.10 -2.67 9.35 22.26 0.21 -2.46 16 22 C -0.11 -2.59 5.89 -19.77 -0.12 -2.71 16 23 C -0.11 -1.87 9.79 71.23 0.70 -1.18 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.49 7.53 -2.39 -0.02 1.47 16 29 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 30 H 0.12 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.09 2.48 8.02 -2.39 -0.02 2.46 16 32 H 0.05 1.53 7.24 -2.39 -0.02 1.52 16 33 H 0.06 2.47 7.38 -2.39 -0.02 2.45 16 34 H 0.06 2.54 7.11 -2.39 -0.02 2.52 16 35 H 0.06 2.59 7.04 -2.39 -0.02 2.57 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.06 2.34 7.87 -2.39 -0.02 2.32 16 39 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 42 H 0.07 1.26 7.53 -2.39 -0.02 1.24 16 Total: -1.00 -65.54 342.07 1.44 -64.09 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.84 Total: 16.10 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 5.12 Total: -36.23 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -5.59 Total: -81.43 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.79 Total: -8.48 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.86 Total: 45.95 kcal Total: -65.54 1.44 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.419 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds