Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00112 * 2 1 4 4 C 1.50693 * 109.47448 * 66.04661 * 3 2 1 5 5 C 1.38640 * 119.75074 * 89.99698 * 4 3 2 6 6 C 1.37612 * 120.24878 * 180.27999 * 5 4 3 7 7 C 1.40722 * 119.74625 * 359.52007 * 6 5 4 8 8 C 1.41393 * 120.24768 * 180.22880 * 7 6 5 9 9 H 1.07990 * 120.00335 * 213.02676 * 8 7 6 10 10 C 1.39950 * 119.99675 * 33.02427 * 8 7 6 11 11 N 1.30825 * 120.00226 * 6.59502 * 10 8 7 12 12 Si 1.86800 * 120.00166 * 186.59247 * 10 8 7 13 13 H 1.48503 * 109.46802 * 59.99982 * 12 10 8 14 14 H 1.48495 * 109.47268 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46975 * 300.00160 * 12 10 8 16 16 C 1.40711 * 119.50918 * 0.47796 * 7 6 5 17 17 C 1.37616 * 119.74629 * 359.75043 * 16 7 6 18 18 C 1.46900 * 110.99885 * 236.04625 * 2 1 3 19 19 C 1.53000 * 109.47095 * 201.50032 * 18 2 1 20 20 C 1.53001 * 112.99662 * 54.41988 * 19 18 2 21 21 C 1.54024 * 113.81694 * 282.58865 * 19 18 2 22 22 O 1.44440 * 85.42836 * 223.23656 * 21 19 18 23 23 C 1.44172 * 93.37792 * 24.09250 * 22 21 19 24 24 H 1.09004 * 109.46884 * 54.64307 * 1 2 3 25 25 H 1.08997 * 109.47438 * 174.63984 * 1 2 3 26 26 H 1.09004 * 109.47005 * 294.64375 * 1 2 3 27 27 H 1.08999 * 109.47232 * 306.04347 * 3 2 1 28 28 H 1.09007 * 109.47166 * 186.05259 * 3 2 1 29 29 H 1.08001 * 119.87434 * 0.02562 * 5 4 3 30 30 H 1.08001 * 120.13020 * 179.72082 * 6 5 4 31 31 H 0.96997 * 120.00144 * 179.97438 * 11 10 8 32 32 H 1.08001 * 120.12622 * 179.72821 * 16 7 6 33 33 H 1.08007 * 119.87750 * 180.02562 * 17 16 7 34 34 H 1.09003 * 109.46998 * 321.50245 * 18 2 1 35 35 H 1.09003 * 109.46976 * 81.50170 * 18 2 1 36 36 H 1.08998 * 109.47619 * 54.98129 * 20 19 18 37 37 H 1.09008 * 109.46571 * 174.97697 * 20 19 18 38 38 H 1.09000 * 109.46765 * 294.97474 * 20 19 18 39 39 H 1.09000 * 113.87153 * 337.34741 * 21 19 18 40 40 H 1.09009 * 113.86258 * 109.04712 * 21 19 18 41 41 H 1.09009 * 113.86465 * 221.76723 * 23 22 21 42 42 H 1.08995 * 113.98441 * 90.07693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.5003 1.9613 2.3798 6 6 2.1805 2.5696 3.5720 7 6 0.9767 3.2893 3.6879 8 6 0.6399 3.9225 4.9064 9 1 -0.3945 4.0003 5.2066 10 6 1.6471 4.4483 5.7235 11 7 2.8857 4.4703 5.3029 12 14 1.2230 5.1188 7.4146 13 1 0.6200 4.0400 8.2378 14 1 2.4576 5.6144 8.0745 15 1 0.2542 6.2357 7.2756 16 6 0.1082 3.3696 2.5837 17 6 0.4462 2.7494 1.4026 18 6 1.9954 -0.7660 -1.1376 19 6 3.4312 -1.2018 -0.8383 20 6 3.5605 -1.9695 0.4788 21 6 4.4705 -0.0779 -1.0080 22 8 5.2764 -1.0801 -1.6655 23 6 4.1349 -1.8832 -2.0271 24 1 -0.3633 0.5947 -0.8382 25 1 -0.3634 -1.0231 -0.0960 26 1 -0.3633 0.4285 0.9341 27 1 1.5612 1.9273 -0.8309 28 1 3.0798 1.3443 -0.1084 29 1 3.4253 1.4116 2.2875 30 1 2.8523 2.4978 4.4146 31 1 3.5838 4.8351 5.8690 32 1 -0.8202 3.9156 2.6629 33 1 -0.2186 2.8101 0.5536 34 1 1.3747 -1.6471 -1.3007 35 1 1.9838 -0.1427 -2.0318 36 1 2.8768 -2.8183 0.4734 37 1 4.5838 -2.3279 0.5914 38 1 3.3134 -1.3090 1.3100 39 1 4.1454 0.7280 -1.6660 40 1 4.8902 0.2803 -0.0678 41 1 4.2890 -2.9540 -1.8936 42 1 3.7056 -1.6317 -2.9969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599571543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = 6.644053 kcal Electronic energy + Delta-G solvation = -21415.203601 eV Core-core repulsion = 18361.017940 eV Total energy + Delta-G solvation = -3054.185661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74495 -38.08760 -36.44948 -33.64657 -32.13000 -30.33096 -29.26622 -27.48193 -27.06186 -26.44746 -25.57799 -24.15820 -21.56367 -20.95340 -19.68505 -18.83285 -17.25034 -16.20974 -16.10681 -15.96161 -15.33639 -14.91772 -14.59240 -14.07259 -13.92643 -13.55770 -13.14456 -13.12185 -12.66763 -12.38981 -12.17719 -11.95569 -11.94560 -11.58772 -11.58036 -11.40217 -11.19701 -11.03538 -10.97925 -10.65207 -10.42120 -10.29739 -10.11070 -9.62970 -9.55918 -9.34287 -9.17664 -7.99300 -7.43811 -7.18611 -6.65061 -4.35702 2.76252 3.05929 3.09338 3.12031 3.17829 3.69049 3.97580 4.02730 4.43611 4.72553 4.86899 5.05227 5.14726 5.24164 5.41105 5.49783 5.56053 5.60259 5.69320 5.71921 5.84607 5.89763 5.95199 6.01318 6.04450 6.10696 6.16095 6.24989 6.33898 6.34640 6.43877 6.51160 6.95159 7.12172 7.27608 7.31852 7.40371 7.42679 7.64228 7.86024 8.08716 8.12366 8.32958 8.67219 8.93558 8.99089 10.30126 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.003989 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.112188 B = 7016.977448 C = 7556.708748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.529 5.529 3 C 0.112 3.888 4 C -0.197 4.197 5 C -0.084 4.084 6 C -0.153 4.153 7 C 0.113 3.887 8 C -0.469 4.469 9 H 0.074 0.926 10 C 0.074 3.926 11 N -0.808 5.808 12 Si 0.911 3.089 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.267 1.267 16 C -0.219 4.219 17 C -0.090 4.090 18 C 0.059 3.941 19 C -0.115 4.115 20 C -0.116 4.116 21 C 0.041 3.959 22 O -0.384 6.384 23 C 0.039 3.961 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.279 0.721 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 -9.220 -10.027 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.253 5.253 3 C -0.014 4.014 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.173 4.173 7 C 0.110 3.890 8 C -0.500 4.500 9 H 0.092 0.908 10 C -0.142 4.142 11 N -0.435 5.435 12 Si 0.735 3.265 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.192 1.192 16 C -0.238 4.238 17 C -0.109 4.109 18 C -0.069 4.069 19 C -0.115 4.115 20 C -0.173 4.173 21 C -0.036 4.036 22 O -0.302 6.302 23 C -0.039 4.039 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.785 -9.395 -9.564 13.430 hybrid contribution -0.647 0.907 -0.013 1.114 sum 0.138 -8.488 -9.577 12.798 Atomic orbital electron populations 1.22381 0.87576 1.00333 1.01645 1.62056 1.07640 1.14726 1.40869 1.20959 0.98896 0.86243 0.95302 1.18873 0.98022 1.07680 0.95243 1.20490 0.97328 0.99003 0.93471 1.21341 0.99609 0.99445 0.96888 1.17624 0.91100 0.88431 0.91817 1.19511 0.94157 1.33181 1.03151 0.90765 1.25840 0.94497 0.94526 0.99324 1.69765 1.01124 1.35974 1.36656 0.86337 0.78639 0.79771 0.81706 1.18998 1.20417 1.19174 1.21037 1.01972 1.07136 0.93673 1.20367 0.95531 0.98571 0.96413 1.22162 0.94841 0.97763 0.92145 1.23597 0.94953 0.95979 0.97009 1.21398 1.00739 0.99691 0.95482 1.24253 0.89862 0.91924 0.97540 1.89692 1.27213 1.36738 1.76594 1.24038 0.85680 0.97043 0.97112 0.96490 0.92553 0.90154 0.95975 0.91181 0.89555 0.86546 0.91048 0.89145 0.89953 0.91006 0.94880 0.92552 0.92926 0.90230 0.90416 0.88706 0.89372 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.99 60.06 0.54 0.95 16 2 N -0.53 -7.86 4.06 -244.37 -0.99 -8.85 16 3 C 0.11 1.87 4.87 -4.98 -0.02 1.85 16 4 C -0.20 -4.07 4.91 -104.33 -0.51 -4.58 16 5 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 6 C -0.15 -3.93 8.63 -38.87 -0.34 -4.27 16 7 C 0.11 2.97 5.51 -106.82 -0.59 2.38 16 8 C -0.47 -12.49 9.05 -37.74 -0.34 -12.83 16 9 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 10 C 0.07 1.87 5.30 -17.34 -0.09 1.78 16 11 N -0.81 -21.12 10.93 55.55 0.61 -20.52 16 12 Si 0.91 18.94 29.56 -169.99 -5.03 13.91 16 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 C -0.22 -5.27 9.80 -38.88 -0.38 -5.65 16 17 C -0.09 -1.94 8.06 -39.66 -0.32 -2.26 16 18 C 0.06 0.71 4.56 -3.82 -0.02 0.70 16 19 C -0.11 -1.35 1.10 -153.43 -0.17 -1.52 16 20 C -0.12 -1.42 8.82 37.16 0.33 -1.09 16 21 C 0.04 0.52 6.11 37.63 0.23 0.75 16 22 O -0.38 -5.26 12.38 -35.23 -0.44 -5.70 16 23 C 0.04 0.41 8.36 37.64 0.31 0.73 16 24 H 0.02 0.23 8.07 -51.93 -0.42 -0.19 16 25 H 0.06 0.69 7.83 -51.93 -0.41 0.29 16 26 H 0.08 1.33 6.52 -51.93 -0.34 1.00 16 27 H 0.02 0.36 8.01 -51.93 -0.42 -0.05 16 28 H 0.07 1.11 4.66 -51.93 -0.24 0.87 16 29 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.12 3.12 6.41 -52.49 -0.34 2.78 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.08 1.58 8.03 -52.48 -0.42 1.16 16 34 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 35 H 0.03 0.39 7.90 -51.93 -0.41 -0.02 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.63 8.08 -51.92 -0.42 0.21 16 38 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 39 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 40 H 0.09 1.27 7.91 -51.92 -0.41 0.86 16 41 H 0.09 0.81 8.10 -51.92 -0.42 0.39 16 42 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -27.35 335.16 -9.23 -36.58 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.68 Total: 4.88 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -1.75 Total: -25.36 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: -0.39 Total: -29.37 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.44 Total: -5.70 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.35 -9.23 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599571543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.225 kcal (2) G-P(sol) polarization free energy of solvation -27.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds