Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00112 * 2 1 4 4 C 1.50693 * 109.47448 * 66.04661 * 3 2 1 5 5 C 1.38640 * 119.75074 * 89.99698 * 4 3 2 6 6 C 1.37612 * 120.24878 * 180.27999 * 5 4 3 7 7 C 1.40722 * 119.74625 * 359.52007 * 6 5 4 8 8 C 1.41393 * 120.24768 * 180.22880 * 7 6 5 9 9 H 1.07990 * 120.00335 * 213.02676 * 8 7 6 10 10 C 1.39950 * 119.99675 * 33.02427 * 8 7 6 11 11 N 1.30825 * 120.00226 * 6.59502 * 10 8 7 12 12 Si 1.86800 * 120.00166 * 186.59247 * 10 8 7 13 13 H 1.48503 * 109.46802 * 59.99982 * 12 10 8 14 14 H 1.48495 * 109.47268 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46975 * 300.00160 * 12 10 8 16 16 C 1.40711 * 119.50918 * 0.47796 * 7 6 5 17 17 C 1.37616 * 119.74629 * 359.75043 * 16 7 6 18 18 C 1.46900 * 110.99885 * 236.04625 * 2 1 3 19 19 C 1.53000 * 109.47095 * 201.50032 * 18 2 1 20 20 C 1.53001 * 112.99662 * 54.41988 * 19 18 2 21 21 C 1.54024 * 113.81694 * 282.58865 * 19 18 2 22 22 O 1.44440 * 85.42836 * 223.23656 * 21 19 18 23 23 C 1.44172 * 93.37792 * 24.09250 * 22 21 19 24 24 H 1.09004 * 109.46884 * 54.64307 * 1 2 3 25 25 H 1.08997 * 109.47438 * 174.63984 * 1 2 3 26 26 H 1.09004 * 109.47005 * 294.64375 * 1 2 3 27 27 H 1.08999 * 109.47232 * 306.04347 * 3 2 1 28 28 H 1.09007 * 109.47166 * 186.05259 * 3 2 1 29 29 H 1.08001 * 119.87434 * 0.02562 * 5 4 3 30 30 H 1.08001 * 120.13020 * 179.72082 * 6 5 4 31 31 H 0.96997 * 120.00144 * 179.97438 * 11 10 8 32 32 H 1.08001 * 120.12622 * 179.72821 * 16 7 6 33 33 H 1.08007 * 119.87750 * 180.02562 * 17 16 7 34 34 H 1.09003 * 109.46998 * 321.50245 * 18 2 1 35 35 H 1.09003 * 109.46976 * 81.50170 * 18 2 1 36 36 H 1.08998 * 109.47619 * 54.98129 * 20 19 18 37 37 H 1.09008 * 109.46571 * 174.97697 * 20 19 18 38 38 H 1.09000 * 109.46765 * 294.97474 * 20 19 18 39 39 H 1.09000 * 113.87153 * 337.34741 * 21 19 18 40 40 H 1.09009 * 113.86258 * 109.04712 * 21 19 18 41 41 H 1.09009 * 113.86465 * 221.76723 * 23 22 21 42 42 H 1.08995 * 113.98441 * 90.07693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.5003 1.9613 2.3798 6 6 2.1805 2.5696 3.5720 7 6 0.9767 3.2893 3.6879 8 6 0.6399 3.9225 4.9064 9 1 -0.3945 4.0003 5.2066 10 6 1.6471 4.4483 5.7235 11 7 2.8857 4.4703 5.3029 12 14 1.2230 5.1188 7.4146 13 1 0.6200 4.0400 8.2378 14 1 2.4576 5.6144 8.0745 15 1 0.2542 6.2357 7.2756 16 6 0.1082 3.3696 2.5837 17 6 0.4462 2.7494 1.4026 18 6 1.9954 -0.7660 -1.1376 19 6 3.4312 -1.2018 -0.8383 20 6 3.5605 -1.9695 0.4788 21 6 4.4705 -0.0779 -1.0080 22 8 5.2764 -1.0801 -1.6655 23 6 4.1349 -1.8832 -2.0271 24 1 -0.3633 0.5947 -0.8382 25 1 -0.3634 -1.0231 -0.0960 26 1 -0.3633 0.4285 0.9341 27 1 1.5612 1.9273 -0.8309 28 1 3.0798 1.3443 -0.1084 29 1 3.4253 1.4116 2.2875 30 1 2.8523 2.4978 4.4146 31 1 3.5838 4.8351 5.8690 32 1 -0.8202 3.9156 2.6629 33 1 -0.2186 2.8101 0.5536 34 1 1.3747 -1.6471 -1.3007 35 1 1.9838 -0.1427 -2.0318 36 1 2.8768 -2.8183 0.4734 37 1 4.5838 -2.3279 0.5914 38 1 3.3134 -1.3090 1.3100 39 1 4.1454 0.7280 -1.6660 40 1 4.8902 0.2803 -0.0678 41 1 4.2890 -2.9540 -1.8936 42 1 3.7056 -1.6317 -2.9969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599571543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = -8.549206 kcal Electronic energy + Delta-G solvation = -21415.862430 eV Core-core repulsion = 18361.017940 eV Total energy + Delta-G solvation = -3054.844490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70277 -39.71324 -37.83985 -35.44671 -33.26845 -31.99850 -31.10006 -28.92995 -28.14772 -27.47570 -26.63192 -25.71257 -22.95377 -22.80194 -21.31917 -19.75607 -19.16459 -17.25363 -17.20826 -17.07727 -16.88610 -16.26138 -15.84437 -15.62484 -15.46737 -14.93667 -14.57807 -14.31513 -14.07188 -13.74508 -13.64071 -13.42778 -13.16372 -12.97229 -12.86203 -12.73061 -12.62058 -12.55930 -12.33803 -12.13260 -12.00512 -11.52630 -11.32831 -11.18882 -11.11524 -11.01008 -10.55248 -9.30615 -9.21755 -8.96903 -8.53090 -6.33903 0.98673 1.17336 1.38309 1.49789 1.51575 2.23654 2.72825 2.79925 3.05626 3.44863 3.78520 3.91508 4.10373 4.23353 4.25573 4.30497 4.40744 4.52545 4.55388 4.59228 4.64138 4.67029 4.75926 4.84432 4.84881 4.98183 5.03748 5.06385 5.10282 5.18002 5.20731 5.24556 5.28327 5.40342 5.48666 5.50157 5.76078 5.96390 6.13669 6.16343 6.30832 6.34709 6.44414 6.75429 6.99469 7.07432 8.43865 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.003989 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.112188 B = 7016.977448 C = 7556.708748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.541 5.541 3 C 0.118 3.882 4 C -0.179 4.179 5 C -0.089 4.089 6 C -0.176 4.176 7 C 0.078 3.922 8 C -0.509 4.509 9 H 0.071 0.929 10 C 0.031 3.969 11 N -0.843 5.843 12 Si 0.982 3.018 13 H -0.261 1.261 14 H -0.269 1.269 15 H -0.261 1.261 16 C -0.233 4.233 17 C -0.087 4.087 18 C 0.063 3.937 19 C -0.113 4.113 20 C -0.112 4.112 21 C 0.034 3.966 22 O -0.408 6.408 23 C 0.045 3.955 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.284 0.716 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -10.340 -11.937 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.265 5.265 3 C -0.009 4.009 4 C -0.181 4.181 5 C -0.108 4.108 6 C -0.196 4.196 7 C 0.076 3.924 8 C -0.540 4.540 9 H 0.089 0.911 10 C -0.181 4.181 11 N -0.470 5.470 12 Si 0.804 3.196 13 H -0.185 1.185 14 H -0.194 1.194 15 H -0.186 1.186 16 C -0.252 4.252 17 C -0.106 4.106 18 C -0.064 4.064 19 C -0.113 4.113 20 C -0.169 4.169 21 C -0.042 4.042 22 O -0.327 6.327 23 C -0.031 4.031 24 H 0.046 0.954 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.230 -10.531 -11.496 15.592 hybrid contribution -0.466 1.134 0.401 1.290 sum -0.236 -9.398 -11.095 14.542 Atomic orbital electron populations 1.22356 0.87107 1.01782 1.00535 1.61911 1.08142 1.13473 1.42981 1.20866 0.99678 0.87362 0.92960 1.19323 0.96661 1.05785 0.96298 1.20698 0.98311 0.98605 0.93157 1.21268 0.99663 1.01102 0.97571 1.17940 0.92135 0.89452 0.92864 1.19764 0.94526 1.35123 1.04588 0.91071 1.26677 0.94099 0.94343 1.02956 1.69847 1.02056 1.36988 1.38155 0.85252 0.78660 0.79102 0.76635 1.18543 1.19384 1.18584 1.21237 1.01960 1.07796 0.94243 1.20659 0.96115 0.97470 0.96313 1.22213 0.94823 0.98163 0.91237 1.23557 0.94797 0.95671 0.97324 1.21328 1.00956 0.99607 0.94991 1.24292 0.90256 0.92458 0.97180 1.89675 1.28787 1.37410 1.76870 1.24224 0.84030 0.97589 0.97296 0.95351 0.90335 0.93016 0.94765 0.90382 0.88134 0.88788 0.90606 0.88759 0.86987 0.88999 0.93649 0.91301 0.93068 0.92830 0.89607 0.90145 0.87833 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 8.99 127.69 1.15 1.92 16 2 N -0.54 -14.52 4.06 -927.05 -3.77 -18.28 16 3 C 0.12 3.64 4.87 85.56 0.42 4.06 16 4 C -0.18 -7.24 4.91 -19.67 -0.10 -7.34 16 5 C -0.09 -4.08 9.67 22.22 0.21 -3.86 16 6 C -0.18 -9.43 8.63 22.73 0.20 -9.24 16 7 C 0.08 4.29 5.51 -21.29 -0.12 4.17 16 8 C -0.51 -28.29 9.05 23.46 0.21 -28.08 16 9 H 0.07 3.81 7.85 -2.92 -0.02 3.79 16 10 C 0.03 1.64 5.30 85.26 0.45 2.09 16 11 N -0.84 -45.78 10.93 21.83 0.24 -45.54 16 12 Si 0.98 39.70 29.56 68.60 2.03 41.73 16 13 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 14 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 15 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 16 C -0.23 -11.42 9.80 22.73 0.22 -11.20 16 17 C -0.09 -3.66 8.06 22.22 0.18 -3.48 16 18 C 0.06 1.27 4.56 86.30 0.39 1.67 16 19 C -0.11 -2.35 1.10 -51.48 -0.06 -2.40 16 20 C -0.11 -2.54 8.82 71.98 0.64 -1.91 16 21 C 0.03 0.82 6.11 72.29 0.44 1.26 16 22 O -0.41 -10.36 12.38 -148.98 -1.84 -12.20 16 23 C 0.05 0.81 8.36 72.30 0.60 1.41 16 24 H 0.03 0.66 8.07 -2.38 -0.02 0.64 16 25 H 0.08 1.65 7.83 -2.39 -0.02 1.63 16 26 H 0.05 1.62 6.52 -2.38 -0.02 1.60 16 27 H 0.03 1.00 8.01 -2.39 -0.02 0.98 16 28 H 0.08 2.30 4.66 -2.38 -0.01 2.29 16 29 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 30 H 0.09 5.36 6.41 -2.91 -0.02 5.34 16 31 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 32 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 33 H 0.11 4.02 8.03 -2.91 -0.02 4.00 16 34 H 0.09 1.53 7.71 -2.39 -0.02 1.52 16 35 H 0.05 0.84 7.90 -2.39 -0.02 0.82 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 1.16 8.08 -2.38 -0.02 1.14 16 38 H 0.05 1.50 7.87 -2.39 -0.02 1.48 16 39 H 0.09 1.88 7.56 -2.39 -0.02 1.86 16 40 H 0.08 2.11 7.91 -2.38 -0.02 2.09 16 41 H 0.10 1.52 8.10 -2.38 -0.02 1.50 16 42 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -61.16 335.16 2.49 -58.68 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.99 Total: 26.55 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 4.85 Total: -50.92 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -3.53 Total: -63.82 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.84 Total: -12.20 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -61.16 2.49 -58.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599571543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.126 kcal (2) G-P(sol) polarization free energy of solvation -61.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds