Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52996 * 109.47041 * 240.00309 * 2 1 3 5 5 C 1.50695 * 109.47503 * 59.99799 * 4 2 1 6 6 H 1.08005 * 119.99460 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00448 * 180.02562 * 5 4 2 8 8 N 1.31506 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99849 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47184 * 90.00264 * 9 7 5 11 11 H 1.48505 * 109.46996 * 209.99923 * 9 7 5 12 12 H 1.48500 * 109.47548 * 329.99555 * 9 7 5 13 13 C 1.53005 * 109.47305 * 120.00060 * 2 1 3 14 14 N 1.46898 * 109.46959 * 174.66232 * 13 2 1 15 15 C 1.48041 * 110.99934 * 78.17972 * 14 13 2 16 16 C 1.51200 * 105.68283 * 146.98760 * 15 14 13 17 17 C 1.38229 * 131.71527 * 162.48871 * 16 15 14 18 18 C 1.38121 * 120.10673 * 179.97438 * 17 16 15 19 19 C 1.38759 * 119.94675 * 0.04287 * 18 17 16 20 20 O 1.35903 * 120.05756 * 180.02562 * 19 18 17 21 21 C 1.38717 * 119.88116 * 359.97438 * 19 18 17 22 22 C 1.38091 * 119.98648 * 359.97438 * 21 19 18 23 23 C 1.48048 * 110.99888 * 193.19018 * 14 13 2 24 24 H 1.09001 * 109.46738 * 297.50696 * 1 2 3 25 25 H 1.09000 * 109.47152 * 57.50860 * 1 2 3 26 26 H 1.08997 * 109.47239 * 177.50977 * 1 2 3 27 27 H 1.08998 * 109.46928 * 193.42111 * 3 2 1 28 28 H 1.08997 * 109.47411 * 313.42392 * 3 2 1 29 29 H 1.09005 * 109.47026 * 73.42448 * 3 2 1 30 30 H 1.09005 * 109.47398 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47118 * 299.99981 * 4 2 1 32 32 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.46973 * 294.66481 * 13 2 1 34 34 H 1.09003 * 109.46678 * 54.66487 * 13 2 1 35 35 H 1.09007 * 110.20776 * 266.03421 * 15 14 13 36 36 H 1.09001 * 110.21225 * 27.93108 * 15 14 13 37 37 H 1.08003 * 119.94665 * 359.97240 * 17 16 15 38 38 H 1.07997 * 120.02782 * 180.02562 * 18 17 16 39 39 H 0.96701 * 113.99429 * 269.96982 * 20 19 18 40 40 H 1.07998 * 120.00714 * 180.02562 * 21 19 18 41 41 H 1.09006 * 110.20907 * 332.06065 * 23 14 13 42 42 H 1.08996 * 110.21036 * 93.95856 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3805 7 6 1.8703 -0.4821 -3.7320 8 7 2.6263 -1.5513 -3.8527 9 14 1.2481 0.3990 -5.2571 10 1 2.2270 1.4399 -5.6614 11 1 1.0823 -0.5801 -6.3614 12 1 -0.0596 1.0374 -4.9612 13 6 2.0401 -0.7213 1.2493 14 7 3.5034 -0.8338 1.1865 15 6 4.1501 0.4469 1.5515 16 6 5.4418 0.0704 2.2414 17 6 6.5851 0.7980 2.5136 18 6 7.6444 0.2036 3.1711 19 6 7.5611 -1.1263 3.5582 20 8 8.6019 -1.7132 4.2058 21 6 6.4133 -1.8553 3.2840 22 6 5.3561 -1.2569 2.6274 23 6 4.0061 -1.7877 2.2010 24 1 -0.3633 0.4746 0.9115 25 1 -0.3633 0.5520 -0.8668 26 1 -0.3633 -1.0267 -0.0446 27 1 3.1035 1.4518 -0.2385 28 1 1.4952 2.0206 -0.7463 29 1 1.8847 1.8828 0.9850 30 1 3.1300 -0.7216 -1.2491 31 1 1.6766 -1.7488 -1.2493 32 1 2.8601 -1.8831 -4.7337 33 1 1.7569 -0.1553 2.1366 34 1 1.6008 -1.7177 1.2983 35 1 4.3584 1.0322 0.6559 36 1 3.5111 1.0113 2.2307 37 1 6.6502 1.8329 2.2117 38 1 8.5369 0.7734 3.3836 39 1 9.2459 -2.1307 3.6175 40 1 6.3461 -2.8903 3.5847 41 1 3.3286 -1.8218 3.0542 42 1 4.1127 -2.7806 1.7641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600186263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -10.548817 kcal Electronic energy + Delta-G solvation = -21440.585425 eV Core-core repulsion = 18385.654226 eV Total energy + Delta-G solvation = -3054.931200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52445 -38.56824 -36.83910 -34.81067 -32.28812 -31.33058 -30.05905 -27.67861 -27.01310 -26.18570 -25.67955 -23.04133 -22.25204 -21.37053 -21.07815 -18.18384 -17.84314 -16.38893 -16.04660 -15.86253 -15.40454 -15.00041 -14.61249 -14.16805 -13.88099 -13.52741 -13.30758 -13.05595 -12.81540 -12.44208 -12.21671 -12.03128 -11.90240 -11.74095 -11.53068 -11.23102 -10.94464 -10.89517 -10.72279 -10.51412 -10.34285 -10.21900 -10.08116 -9.61942 -9.05097 -8.89597 -8.72524 -8.57579 -8.21021 -7.85991 -5.85867 -3.85698 1.16776 1.28497 3.37385 3.44152 3.46313 3.51016 4.02310 4.27458 4.53816 4.55904 4.65721 4.93048 5.23892 5.38317 5.41494 5.49450 5.54469 5.57391 5.66387 5.72279 5.89707 5.92818 5.97705 6.00059 6.13558 6.23529 6.26239 6.32844 6.38241 6.46289 6.55679 6.71032 6.74613 6.78189 7.04418 7.11372 7.21559 7.32482 7.50371 7.52539 7.88261 8.08372 8.25051 8.60260 9.21916 9.76070 11.25234 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.004174 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.210196 B = 6706.449038 C = 7108.749861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.131 4.131 4 C 0.045 3.955 5 C -0.510 4.510 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.058 3.942 14 N -0.483 5.483 15 C 0.073 3.927 16 C -0.103 4.103 17 C -0.086 4.086 18 C -0.145 4.145 19 C 0.098 3.902 20 O -0.500 6.500 21 C -0.127 4.127 22 C -0.082 4.082 23 C 0.073 3.927 24 H 0.027 0.973 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.034 0.966 31 H 0.008 0.992 32 H 0.257 0.743 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.389 0.611 40 H 0.127 0.873 41 H 0.057 0.943 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 1.870 14.930 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.059 4.059 3 C -0.188 4.188 4 C 0.008 3.992 5 C -0.548 4.548 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.069 4.069 14 N -0.205 5.205 15 C -0.055 4.055 16 C -0.104 4.104 17 C -0.105 4.105 18 C -0.163 4.163 19 C 0.054 3.946 20 O -0.310 6.310 21 C -0.146 4.146 22 C -0.082 4.082 23 C -0.055 4.055 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.244 0.756 40 H 0.144 0.856 41 H 0.075 0.925 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.919 1.778 14.745 16.384 hybrid contribution -0.222 0.433 -0.537 0.725 sum 6.697 2.211 14.208 15.862 Atomic orbital electron populations 1.21736 0.95653 1.01020 0.99995 1.20609 0.94222 0.95143 0.95887 1.22007 1.01788 0.96365 0.98625 1.19028 0.97392 0.94136 0.88639 1.21347 1.30595 1.11785 0.91102 0.92786 1.24979 0.95535 0.95113 0.98794 1.69976 1.37341 1.23143 1.22977 0.86759 0.79151 0.79486 0.83543 1.20922 1.21480 1.20100 1.22563 0.86077 1.00625 0.97683 1.65300 1.07226 1.04811 1.43170 1.22035 0.90685 0.93610 0.99126 1.20876 0.96146 0.94751 0.98613 1.20364 0.91787 0.99967 0.98367 1.21266 0.99786 0.95026 1.00267 1.18253 0.88575 0.91489 0.96301 1.84814 1.35499 1.74901 1.35804 1.20673 0.93079 1.00381 1.00441 1.20526 0.95698 0.94995 0.97005 1.21702 0.91030 0.98661 0.94092 0.95367 0.91646 0.93561 0.92180 0.92638 0.95659 0.94749 0.97319 0.93346 0.95557 0.91094 0.87916 0.92289 0.85515 0.85355 0.75592 0.85554 0.92483 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.14 37.16 0.30 -2.03 16 2 C -0.06 -1.14 0.61 -154.51 -0.09 -1.23 16 3 C -0.13 -2.40 6.72 37.16 0.25 -2.15 16 4 C 0.05 1.13 3.78 -27.89 -0.11 1.03 16 5 C -0.51 -13.96 7.80 -34.44 -0.27 -14.23 16 6 H 0.05 1.44 5.77 -52.48 -0.30 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 9 Si 0.88 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 0.99 3.87 -3.82 -0.01 0.97 16 14 N -0.48 -8.21 4.42 -234.90 -1.04 -9.25 16 15 C 0.07 1.11 4.88 -4.10 -0.02 1.09 16 16 C -0.10 -1.48 6.26 -104.29 -0.65 -2.13 16 17 C -0.09 -1.07 10.04 -39.63 -0.40 -1.47 16 18 C -0.14 -1.68 9.99 -39.43 -0.39 -2.07 16 19 C 0.10 1.18 6.71 -39.21 -0.26 0.92 16 20 O -0.50 -5.16 13.50 -19.43 -0.26 -5.42 16 21 C -0.13 -1.61 9.98 -39.46 -0.39 -2.01 16 22 C -0.08 -1.16 6.26 -104.34 -0.65 -1.81 16 23 C 0.07 1.06 6.55 -4.10 -0.03 1.03 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.30 6.69 -51.93 -0.35 0.95 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.13 5.31 -51.93 -0.28 0.85 16 28 H 0.05 1.07 7.04 -51.93 -0.37 0.71 16 29 H 0.02 0.39 7.55 -51.93 -0.39 0.00 16 30 H 0.03 0.95 7.46 -51.93 -0.39 0.56 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.03 0.40 7.52 -51.93 -0.39 0.01 16 34 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 35 H 0.10 1.67 5.88 -51.93 -0.31 1.37 16 36 H 0.06 0.84 6.95 -51.93 -0.36 0.48 16 37 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.39 2.18 9.06 45.56 0.41 2.59 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.06 0.75 7.81 -51.93 -0.41 0.34 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -31.65 329.24 -9.08 -40.73 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.63 Total: 1.16 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -2.83 Total: -22.59 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.30 Total: -35.53 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.26 Total: -5.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.65 -9.08 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600186263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.186 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds